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University of Nebraska - Lincoln

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Full-Text Articles in Meat Science

Evaluation Of Plant- Waxes To Estimate Forage Intake In Grazing Cattle, Hannah C. Hamilton, Jerry D. Volesky, Robert M. Lewis Lewis Jan 2017

Evaluation Of Plant- Waxes To Estimate Forage Intake In Grazing Cattle, Hannah C. Hamilton, Jerry D. Volesky, Robert M. Lewis Lewis

Nebraska Beef Cattle Reports

Although key to the efficiency of a cattle operation, feed intake is challenging to evaluate in a grazing setting. However, even within forage- based systems, plant- wax markers may be used to predict dietary choices and feed intake. Plant- waxes are a complex mixture of lipids found on the surface of plants. When sufficiently unique among plants, the composition of diets can be determined from the pattern of these compounds in the forages ingested. These markers were used to delineate the parts of the corn plant and, separately, 8 western rangeland grasses and legumes. Using plant waxes, the components of …


Evaluating The Impacts Of Field Peas In Growing And Finishing Diets On Performance And Carcass Characteristics, Hannah L. Greenwell, Karla Jenkins, Jim C. Macdonald Donald, Matt K. Luebbe Jan 2017

Evaluating The Impacts Of Field Peas In Growing And Finishing Diets On Performance And Carcass Characteristics, Hannah L. Greenwell, Karla Jenkins, Jim C. Macdonald Donald, Matt K. Luebbe

Nebraska Beef Cattle Reports

The impact of field peas as a grazing supplement and a component of finishing diets on performance and carcass characteristics was evaluated over two years. During grazing, cattle supplemented with field peas had a greater ending body weight and average daily gain than cattle that received no supplement. However, cattle supplemented with corn had greater average daily gain than both peas and control cattle. Overall, those cattle not supplemented during grazing compensated 53% and 88% when compared to those cattle supplemented corn and peas, respectively. Inclusion of field peas in grower supplement or finishing diets may be advantageous if appropriately …


Effects Of Field Pea Supplementation On Digestibility And Rumen Volatile Fatty Acid Concentration Of Diets Containing High And Low Quality Forages, Hannah L. Greenwell, Jana L. Gramkow, Melissa L. Jolly-Breithaupt Breithaupt, Jim C. Macdonald, Karla Jenkins Jan 2017

Effects Of Field Pea Supplementation On Digestibility And Rumen Volatile Fatty Acid Concentration Of Diets Containing High And Low Quality Forages, Hannah L. Greenwell, Jana L. Gramkow, Melissa L. Jolly-Breithaupt Breithaupt, Jim C. Macdonald, Karla Jenkins

Nebraska Beef Cattle Reports

Five ruminally cannulated steers were used to evaluate the effects of supplementation (no supplement, field peas, or dry rolled corn; 0.43% BW) with high and low quality forages on diet digestibility and rumen volatile fatty acid concentrations. Th e inclusion of field peas increased dry matter intake and organic matter digestibility over dry rolled corn and unsupplemented steers. Propionate proportions were less for field peas and control treatments than dry rolled corn, while acetate proportions increased in field peas, and control treatments as compared to dry rolled corn. As a result, acetate to propionate ratio was reduced when dry rolled …


Effects Of Wintering System On Cow And Calf Performance In A Summer- Calving Intensive Production System, Shelby E. Gardine, Jason M. Warner, Curtis J. Bittner Bittner, Robert G. Bondurant, Karla Jenkins, Richard J. Rasby, Matt K. Luebbe, Galen E. Erickson, Terry J. Klopfenstein Jan 2017

Effects Of Wintering System On Cow And Calf Performance In A Summer- Calving Intensive Production System, Shelby E. Gardine, Jason M. Warner, Curtis J. Bittner Bittner, Robert G. Bondurant, Karla Jenkins, Richard J. Rasby, Matt K. Luebbe, Galen E. Erickson, Terry J. Klopfenstein

Nebraska Beef Cattle Reports

A study evaluated the effects of two wintering systems (cornstalk grazing and drylot feeding) on cow- calf performance in a summer- calving intensively managed cowherd at two locations. Grazing cow- calf pairs on cornstalks resulted in lower ending BW of cows and reduced ADG of calves when compared to drylot cow- calf pairs at weaning. A partial budget of incorporating winter cornstalk grazing into an intensive production system suggests that cows wintered on cornstalks were $136.85 more profitable when compared to cows wintered in the drylot.


Effects Of Modified Distillers Grains And Corn Ratios As Supplements In Diets Varying In Forage Quality On Performance Of Growing Beef Steers, Viviane B. Ferrari, Robert G. Bondurant, Galen E. Erickson Erickson, Terry J. Klopfenstein, Jim C. Macdonald Jan 2017

Effects Of Modified Distillers Grains And Corn Ratios As Supplements In Diets Varying In Forage Quality On Performance Of Growing Beef Steers, Viviane B. Ferrari, Robert G. Bondurant, Galen E. Erickson Erickson, Terry J. Klopfenstein, Jim C. Macdonald

Nebraska Beef Cattle Reports

Distillers grains (DG) have been intensively used for beef production, but prices relative to corn vary such that it may be beneficial to displace a portion of DG with corn in certain circumstances. Four ratios of supplemental energy (40% of diet DM) from modified distillers grains and corn (100:0, 80:20, 60:40, and 40:60) were supplemented in one of 3 forage diets (56% of diet DM) and evaluated for performance. Forages were high (brome hay + sorghum silage) or low quality. Low quality forages were corn residue baled through conventional rake and bale, or by disengaging the spreader on the combine …


Fatty Acid Composition Of Beef Fed Omnigen- Af At Receiving Or Finishing, Katherine I. Domenech, Michael D. Chao, Joe O. Buntyn Buntyn, Ty B. Schmidt, Chris Calkins Jan 2017

Fatty Acid Composition Of Beef Fed Omnigen- Af At Receiving Or Finishing, Katherine I. Domenech, Michael D. Chao, Joe O. Buntyn Buntyn, Ty B. Schmidt, Chris Calkins

Nebraska Beef Cattle Reports

Beef fatty acid profiles and superoxide dismutase activity were determined for cattle receiving OmniGen- AF supplementation (a patented nutritional supplement) at receiving (first 28 d at the feedlot) or throughout finishing (all 210 d of finishing) vs. a control group (non- supplemented). Th e most meaningful change in fatty acid composition from inclusion of OmniGen- AF was total poly- unsaturated fatty acid (PUFA) content where beef from the finishing group had more PUFA content in relation to the receiving group and was not different from the control group. Despite this increase in PUFA, cattle supplemented through finishing tended to have …


Effect Of Backgrounding System On Steer Performance And Carcass Characteristics, Jordan L. Cox, Kristin E. Hales, Kristen M. Ulmer Ulmer, Richard J. Rasby, Steven D. Shackleford, Chad Engle, John Rieckman, Harvey C. Freetly, Mary Drewnoski Jan 2017

Effect Of Backgrounding System On Steer Performance And Carcass Characteristics, Jordan L. Cox, Kristin E. Hales, Kristen M. Ulmer Ulmer, Richard J. Rasby, Steven D. Shackleford, Chad Engle, John Rieckman, Harvey C. Freetly, Mary Drewnoski

Nebraska Beef Cattle Reports

The impact of 3 backgrounding systems: grazing corn residue with distillers grains supplementation at 0.86% BW/d, grazing an oats-brassica forage, or feeding a grower ration in a drylot on finishing performance and carcass characteristics were evaluated. Backgrounding phase gains were greatest for steers fed a grower ration in the drylot (3.58 lb/d), intermediate for steers grazing oats-brassica forage and then fed the grower ration for short period (2.65 lb/d), and least for steers grazing corn residue while supplemented distillers grains and then fed the grower ration for short period (2.22 lb/d). These backgrounding treatment differences did not affect ADG during …


Shelf Life Of Ground Beef From Cattle Fed Distillers Grains Containing Different Amounts Of Oil, Faith D. Rasmussen, Chad G. Bower, Gary A. Sullivan Sullivan Jan 2017

Shelf Life Of Ground Beef From Cattle Fed Distillers Grains Containing Different Amounts Of Oil, Faith D. Rasmussen, Chad G. Bower, Gary A. Sullivan Sullivan

Nebraska Beef Cattle Reports

Beef shoulder clods were collected from steers fed one of four finishing diets: no distillers grains and three with distillers grains containing different amounts of oil. Raw ground beef patties were evaluated for changes in objective color, discoloration, and lipid oxidation during simulated retail display (7 days). Cooked beef links in refrigerated (18 days) and frozen storage (198 days) were analyzed for lipid oxidation throughout shelf life. Fatty acid profiles were evaluated in lean, subcutaneous fat, and ground composite samples. All distillers grain diets increased C18:2 and polyunsaturated fatty acids in beef. There were no dietary differences in lipid oxidation …


Rumen Undegradable Protein And Bambermycins Supplementation Of Calves Grazing Corn Residue, Cody A. Welchons, Robert G. Bondurant, F. Henry Hilscher Hilscher, Jim C. Macdonald, Galen E. Erickson Jan 2017

Rumen Undegradable Protein And Bambermycins Supplementation Of Calves Grazing Corn Residue, Cody A. Welchons, Robert G. Bondurant, F. Henry Hilscher Hilscher, Jim C. Macdonald, Galen E. Erickson

Nebraska Beef Cattle Reports

Steer calves grazing non- irrigated corn residue were supplemented with a corn residue and by- product pellet that contained either Soypass, soybean meal, or processed soybean meal at a rate of 4 lb / d. Additionally, a supplement was fed at 1 lb / d that provided 0 or 20 mg / steer daily of bambermycins (Gainpro®). There was no interaction between bambermycins inclusion and pellet type. Likewise, there was no effect of pellet type or bambermycins on ending BW or ADG. In order to maximize gain of calves grazing corn residue it is important to provide a supplement that …


Delineating Complex Forage Mixtures Using Plant-Wax Markers, Napoleón Vargas Jurado, Hannah C. Hamilton, Ronald M. Lewis Jan 2017

Delineating Complex Forage Mixtures Using Plant-Wax Markers, Napoleón Vargas Jurado, Hannah C. Hamilton, Ronald M. Lewis

Nebraska Beef Cattle Reports

Plant waxes provide a marker profile of individual plants that, when sufficiently distinct, can be used to estimate the diet composition of grazing cattle. They also may provide a tool for reliably predicting feed intake. The traditional method (nonnegative least squares) to use these markers to predict diet composition has limitations. A newer statistical approach (Bayesian linear unmixing) deemed more efficient was tested with simulation. Samples from 8 forage species in Nebraska were analyzed for their plant- wax marker contents. Those concentrations were used to simulate 1000 diets for 4 mixtures containing 2, 3, 5 or 8 plants. The efficiency …


Effect Of Corn Residue Grazing Or Baling On Subsequent Crop Yield And Nutrient Removal, Kristen M. Ulmer, Jordan L. Cox, Manbir K. Rakkar Rakkar, Robert G. Bondurant, Humberto Blanco-Canqui, Mary Drewnoski, Karla H. Jenkins, James C. Macdonald, Rick J. Rasby Jan 2017

Effect Of Corn Residue Grazing Or Baling On Subsequent Crop Yield And Nutrient Removal, Kristen M. Ulmer, Jordan L. Cox, Manbir K. Rakkar Rakkar, Robert G. Bondurant, Humberto Blanco-Canqui, Mary Drewnoski, Karla H. Jenkins, James C. Macdonald, Rick J. Rasby

Nebraska Beef Cattle Reports

A 2- year study evaluated the effect of corn residue baling or grazing on subsequent yields, as well as, nutrient removal by baling at five locations in Nebraska. Three treatments were applied to each field: baled, grazed, and control (no baling and no grazing). Grain and stover yields were measured by hand harvest at maturity. No differences were observed among treatments for corn yield with baled having yields of 234 bu grain / acre, grazed with 239 bu grain / acre and control with 223 bu grain / acre. Th ere was no difference in stover yield among treatments (8,326, …


Timed Insemination Vs. Modified Estrus Detection In Beef Heifers, Benjamin T. Tibbitts, Tonya L. Meyer, Dan J. Kelly Kelly, Richard N. Funston Jan 2017

Timed Insemination Vs. Modified Estrus Detection In Beef Heifers, Benjamin T. Tibbitts, Tonya L. Meyer, Dan J. Kelly Kelly, Richard N. Funston

Nebraska Beef Cattle Reports

Th e objective of this study was to compare a modified estrus detection and fixed time AI vs. no estrus detection and fixed time AI on subsequent pregnancy rates. Yearling heifers were estrus synchronized and AI at 72 ± 2 h after prostaglandin injection. In one group estrus was not detected and all heifers received gonadotropin releasing hormone at the fixed- time AI; in the other group estrus was detected at 58 ± 2 and 70 ± 2 h after prostaglandin and inseminated in the following order at 72 ± 2 h: heifers in estrus at 58 h, heifers in …


Growth And Reproductive Performance Of Yearling Beef Heifers Implanted With Revalor G In The Nebraska Sandhills, Benjamin T. Tibbitts, Hazy Rae Nielson, K. H. Ramsay Ramsay, Richard N. Funston Jan 2017

Growth And Reproductive Performance Of Yearling Beef Heifers Implanted With Revalor G In The Nebraska Sandhills, Benjamin T. Tibbitts, Hazy Rae Nielson, K. H. Ramsay Ramsay, Richard N. Funston

Nebraska Beef Cattle Reports

Th is study evaluated effects of a single stocker implant (Revalor G) on growth and reproductive performance of yearling beef heifers in the Nebraska Sandhills. Crossbred heifers, grazing native Sandhills range, were randomly assigned to either be implanted 82 ± 2 days prior to estrus synchronization, or not implanted, to determine the effects of growth implants on heifer performance. Heifers were bred via artificial insemination followed with clean- up bulls. Implanted heifers gained more and were heavier at the end of the trial, but had a reduced pregnancy rate than non- implanted heifers. Implanted heifers also had a lower pregnancy …


Impact Of Heifer Development System In Two Different Breeding Seasons, Shelby A. Springman, Hazy Rae Nielson, Jacqueline A. Musgrave Musgrave, John Nollette, Andy Applegarth, Richard N. Funston Jan 2017

Impact Of Heifer Development System In Two Different Breeding Seasons, Shelby A. Springman, Hazy Rae Nielson, Jacqueline A. Musgrave Musgrave, John Nollette, Andy Applegarth, Richard N. Funston

Nebraska Beef Cattle Reports

Replacement heifers from March and May calving herds were offered ad libitum meadow hay and 4 lb/d supplement or grazed meadow and offered 1 lb/d supplement from mid- January to mid- April. Heifers fed hay gained more during the treatment; however, heifers grazing meadow experienced compensatory gain, resulting in similar body weight at pregnancy diagnosis in both calving herds. Pregnancy rates were similar between treatment groups in March and May heifers. A reduced input winter management system is a viable option to maintain pregnancy rates in early and late summer breeding seasons.


Effects Of Distillers Grains Or Fiber On Enterohemorrhagic Escherichia Coli In Steers, Liesel G. Schneider, Curtis J. Bittner, Jordan E. Burhoop Burhoop, F. Henry Hilscher, Galen E. Erickson, Terry J. Klopfenstein, Rodney A. Moxley, David R. Smith Jan 2017

Effects Of Distillers Grains Or Fiber On Enterohemorrhagic Escherichia Coli In Steers, Liesel G. Schneider, Curtis J. Bittner, Jordan E. Burhoop Burhoop, F. Henry Hilscher, Galen E. Erickson, Terry J. Klopfenstein, Rodney A. Moxley, David R. Smith

Nebraska Beef Cattle Reports

Increased probability for fecal shedding and colonization by Escherichia coli O157:H7 has been observed in previous studies when steers are fed increased inclusions of distillers grains. A feeding study was conducted to determine if distillers grains or fiber from distillers grains in the finishing ration of feedlot steers affected fecal shedding prevalence of seven serogroups of enterohemorrhagic Escherichia coli (EHEC- 7). For EHEC O45 and EHEC O103, the greatest prevalence of shedding occurred when steers were fed increased distillers grains For all EHECs except for O111, fecal shedding prevalence was similar between the corn control and either of the corn …


Effect Of Long- Term Corn Residue Grazing On Soil Properties, Manbir K. Rakkar, Humberto Blanco, Mary E. Drewnoski Drewnoski, Jim C. Macdonald, Terry J. Klopfenstein Jan 2017

Effect Of Long- Term Corn Residue Grazing On Soil Properties, Manbir K. Rakkar, Humberto Blanco, Mary E. Drewnoski Drewnoski, Jim C. Macdonald, Terry J. Klopfenstein

Nebraska Beef Cattle Reports

An experiment was conducted to evaluate the effect of long- term (16 years) corn residue grazing with cattle on soil compaction, soil structure, soil organic matter, and nutrients. Three treatments: 1) fall grazing (November through January; 1.8 to 2.5 AUM/ac), 2) spring grazing (February to middle April; 2.3 to 3.1 AUM/ac), and 3) control (no grazing) under a no- till irrigated corn- soybean system in eastern Nebraska were studied. Crop yields were increased and soil bulk density and cone index (parameters of soil compaction), wet soil aggregate stability (parameter of soil structural quality), and organic matter content were not affected …


Effect Of Increasing Supplemental Rumen Undegradable Protein (Rup) On Performance Of Calves Fed A Silage Growing Diet, Colton R. Oney, F. Henry Hilscher, Robert G. Bondurant Bondurant, Andrea K. Watson, Galen E. Erickson, Terry J. Klopfenstein Jan 2017

Effect Of Increasing Supplemental Rumen Undegradable Protein (Rup) On Performance Of Calves Fed A Silage Growing Diet, Colton R. Oney, F. Henry Hilscher, Robert G. Bondurant Bondurant, Andrea K. Watson, Galen E. Erickson, Terry J. Klopfenstein

Nebraska Beef Cattle Reports

A growing study evaluated the effects of increasing supplemental rumen undegradable protein (RUP) on performance of calves fed an 85% corn silage diet. Five levels of supplementation were evaluated with 12 individually fed steers per level of supplement. Supplement levels consisted of 0, 3.25, 6.5, 9.75 and 13% supplemental RUP (% of diet DM) fed as a blend of 60% Soypass and 40% Empyreal. Increasing supplemental RUP in the diet increased ending body weight and average daily gain linearly, and decreased F:G linearly while DMI remained constant among treatments. As cattle grew from 600 to 730 lb, F:G was improved …


2017 Nebraska Beef Cattle Report (Complete) Jan 2017

2017 Nebraska Beef Cattle Report (Complete)

Nebraska Beef Cattle Reports

Contents

Cow/Calf: Effect of Heifer Development System on Reproduction and Subsequent Gain as a Pregnant Heifer • Impact of Heifer Development System in Two Breeding Seasons • Timed Insemination vs. Modifi ed Estrus Detection in Beef Heifers • Growth and Reproductive Performance of Yearling Beef Heifers Implanted with Revalor G in the Nebraska Sandhills • Development of Terminal and Maternal Economic Selection Indices in Beefmaster Cattle • Effects of Wintering System on Cow and Calf Performance in a Summer- Calving Intensive Production System • Methods to Increase Productivity of Spring Calving Production Systems in the Nebraska Sandhills

Growing: Effect of …


Transcriptomic And Bioinformatics Analysis Of The Early Time-Course Of The Response To Prostaglandin F2 Alpha In The Bovine Corpus Luteum, Heather Talbott, Xiaoying Foote, Fang Qiu, Pan Zhang, Chittibabu Guda, Fang Yu, Robert A. Cushman, Jennifer R. Wood, Cheng Wang, Andrea S. Cupp, John S. Davis Jan 2017

Transcriptomic And Bioinformatics Analysis Of The Early Time-Course Of The Response To Prostaglandin F2 Alpha In The Bovine Corpus Luteum, Heather Talbott, Xiaoying Foote, Fang Qiu, Pan Zhang, Chittibabu Guda, Fang Yu, Robert A. Cushman, Jennifer R. Wood, Cheng Wang, Andrea S. Cupp, John S. Davis

Department of Animal Science: Faculty Publications

RNA expression analysis was performed on the corpus luteum tissue at five time points after prostaglandin F2 alpha treatment of midcycle cows using an Affymetrix Bovine Gene v1 Array. The normalized linear microarray data was uploaded to the NCBI GEO repository (GSE94069). Subsequent statistical analysis determined differentially expressed transcripts ± 1.5-fold change from saline control with P ≤ 0.05. Gene ontology of differentially expressed transcripts was annotated by DAVID and Panther. Physiological characteristics of the study animals are presented in a figure. Bioinformatic analysis by Ingenuity Pathway Analysis was curated, compiled, and presented in tables. A dataset comparison with similar …


Rumen Fluid Metabolomics Analysis Associated With Feed Efficiency On Crossbred Steers, Virginia M. Artegoitia, Andrew P. Cederberg, Ronald M. Lewis, Harvey C. Freetly Jan 2017

Rumen Fluid Metabolomics Analysis Associated With Feed Efficiency On Crossbred Steers, Virginia M. Artegoitia, Andrew P. Cederberg, Ronald M. Lewis, Harvey C. Freetly

Department of Animal Science: Faculty Publications

The rumen has a central role in the efficiency of digestion in ruminants. To identify potential differences in rumen function that lead to differences in average daily gain (ADG), rumen fluid metabolomic analysis by LC-MS and multivariate/univariate statistical analysis were used to identify differences in rumen metabolites. Individual feed intake and body-weight was measured on 144 steers during 105 d on a high concentrate ration. Eight steers with the greatest ADG and 8 steers with the least-ADG with dry matter intake near the population average were selected. Blood and rumen fluid was collected from the 16 steers 26 d before …


A 16.7 Kb Deletion In Sipa1l3 Is Associated With Juvenile Cataract In Mice, Lianna R. Walker, Emily R. Tosky, Kylee M. Sutton, Rhonda Griess, Marytza D. Abebe, Sarah Y. Barnes, Tom Cunningham, Stephen D. Kachman, Merlyn K. Nielsen, Daniel C. Ciobanu Jan 2017

A 16.7 Kb Deletion In Sipa1l3 Is Associated With Juvenile Cataract In Mice, Lianna R. Walker, Emily R. Tosky, Kylee M. Sutton, Rhonda Griess, Marytza D. Abebe, Sarah Y. Barnes, Tom Cunningham, Stephen D. Kachman, Merlyn K. Nielsen, Daniel C. Ciobanu

Department of Animal Science: Faculty Publications

Congenital or juvenile cataract is a disease condition in which opacification of the lenses is present at birth or manifests early in life. It has been attributed to different monogenic factors with a high degree of heterogeneity and is often studied using mouse models. A spontaneous mutation was identified in a mouse line selected for heat loss that influenced lens formation and resulted in juvenile cataracts in mice homozygous for the recessive allele. Genetic dissection of this selection line by combining high-density genotypes and homozygosity mapping uncovered a 906 kb fragment on MMU7 encompassing 21 SNPs split into two groups …


Early Transcriptome Responses Of The Bovine Midcycle Corpus Luteum To Prostaglandin F2Α Includes Cytokine Signaling, Heather Talbott, Xiaoying Artegoitia, Fang Qiu, Pan Zhang, Chittibabu Guda, Fang Yu, Robert A. Cushman, Jennifer R. Wood, Cheng Wang, Andrea S. Cupp, John S. Davis Jan 2017

Early Transcriptome Responses Of The Bovine Midcycle Corpus Luteum To Prostaglandin F2Α Includes Cytokine Signaling, Heather Talbott, Xiaoying Artegoitia, Fang Qiu, Pan Zhang, Chittibabu Guda, Fang Yu, Robert A. Cushman, Jennifer R. Wood, Cheng Wang, Andrea S. Cupp, John S. Davis

Department of Animal Science: Faculty Publications

In ruminants, prostaglandin F2alpha (PGF2α)-mediated luteolysis is essential prior to estrous cycle resumption, and is a target for improving fertility. To deduce early PGF2α-provoked changes in the corpus luteum a short time-course (0.5-4 h) was performed on cows at midcycle. A microarraydetermined transcriptome was established and examined by bioinformatic pathway analysis. Classic PGF2α effects were evident by changes in early response genes (FOS, JUN, ATF3) and prediction of active pathways (PKC, MAPK). Several cytokine transcripts were elevated and NF-kB and STAT activation were predicted by pathway analysis. Self-organizing map analysis grouped differentially expressed transcripts into ten mRNA expression patterns indicative …


Shinygpas: Interactive Genomic Prediction Accuracy Simulator Based On Deterministic Formulas, Gota Morota Jan 2017

Shinygpas: Interactive Genomic Prediction Accuracy Simulator Based On Deterministic Formulas, Gota Morota

Department of Animal Science: Faculty Publications

Background: Deterministic formulas for the accuracy of genomic predictions highlight the relationships among prediction accuracy and potential factors influencing prediction accuracy prior to performing computationally intensive cross-validation. Visualizing such deterministic formulas in an interactive manner may lead to a better understanding of how genetic factors control prediction accuracy. Results: The software to simulate deterministic formulas for genomic prediction accuracy was implemented in R and encapsulated as a web-based Shiny application. Shiny genomic prediction accuracy simulator (ShinyGPAS) simulates various deterministic formulas and delivers dynamic scatter plots of prediction accuracy versus genetic factors impacting prediction accuracy, while requiring only mouse navigation in …


Dietary Energy Drives The Dynamic Response Of Bovine Rumen Viral Communities, Christopher L. Anderson, Matthew B. Sullivan, Samodha C. Fernando Jan 2017

Dietary Energy Drives The Dynamic Response Of Bovine Rumen Viral Communities, Christopher L. Anderson, Matthew B. Sullivan, Samodha C. Fernando

Department of Animal Science: Faculty Publications

Background: Rumen microbes play a greater role in host energy acquisition than that of gut-associated microbes in monogastric animals. Although genome-enabled advancements are providing access to the vast diversity of uncultivated microbes, our understanding of variables shaping rumen microbial communities is in its infancy. Viruses have been shown to impact microbial populations through a myriad of processes, including cell lysis and reprogramming of host metabolism. However, little is known about the processes shaping the distribution of rumen viruses or how viruses may modulate microbial-driven processes in the rumen. To this end, we investigated how rumen bacterial and viral community structure …


Genome-Wide Association Study For Feed Efficiency And Growth Traits In U.S. Beef Cattle, Christopher M. Seabury, David L. Oldeschulte, Mahdi Saatchi, Jonathan E. Beever, Jared E. Decker, Yvette A. Halley, Eric K. Bhattarai, Maral Molael, Harvey Freetly, Stephanie L. Hansen, Helen Yampara-Iquise, Kristen A. Johnson, Monty S. Kerley, Jaewoo Kim, Daniel D. Loy, Elisa Marques, Holly L. Neibergs, Robert D. Schnabel, Daniel W. Shike, Matthew L. Spangler, Bob Weaber, D. J. Garrick, Jeremy F. Taylor Jan 2017

Genome-Wide Association Study For Feed Efficiency And Growth Traits In U.S. Beef Cattle, Christopher M. Seabury, David L. Oldeschulte, Mahdi Saatchi, Jonathan E. Beever, Jared E. Decker, Yvette A. Halley, Eric K. Bhattarai, Maral Molael, Harvey Freetly, Stephanie L. Hansen, Helen Yampara-Iquise, Kristen A. Johnson, Monty S. Kerley, Jaewoo Kim, Daniel D. Loy, Elisa Marques, Holly L. Neibergs, Robert D. Schnabel, Daniel W. Shike, Matthew L. Spangler, Bob Weaber, D. J. Garrick, Jeremy F. Taylor

Department of Animal Science: Faculty Publications

Background: Single nucleotide polymorphism (SNP) arrays for domestic cattle have catalyzed the identification of genetic markers associated with complex traits for inclusion in modern breeding and selection programs. Using actual and imputed Illumina 778K genotypes for 3887 U.S. beef cattle from 3 populations (Angus, Hereford, SimAngus), we performed genome-wide association analyses for feed efficiency and growth traits including average daily gain (ADG), dry matter intake (DMI), mid-test metabolic weight (MMWT), and residual feed intake (RFI), with marker-based heritability estimates produced for all traits and populations.

Results: Moderate and/or large-effect QTL were detected for all traits in all populations, as jointly …


Influence Of Sodium Chloride Reduction And Replacement With Potassium Chloride Based Salts On The Sensory And Physico-Chemical Characteristics Of Pork Sausage Patties, Regan E. Stanley, Chad G. Bower, Gary A. Sullivan Jan 2017

Influence Of Sodium Chloride Reduction And Replacement With Potassium Chloride Based Salts On The Sensory And Physico-Chemical Characteristics Of Pork Sausage Patties, Regan E. Stanley, Chad G. Bower, Gary A. Sullivan

Department of Animal Science: Faculty Publications

This study evaluated the effects of sodium chloride reduction and replacement with potassium chloride or modified potassium chloride based salts using a weight or molar equivalent basis on the sensory and physicochemical properties of pork sausage patties. Three independent replications of pork sausage patties were manufactured to compare five treatments: full sodium, reduced sodium, modified potassium chloride weight based replacement, modified potassium chloride molar based replacement, and standard potassium chloride weight based replacement. Salt replacement did not affect (P > 0.05) moisture, protein, fat, textural properties, lipid oxidation, or redness. Sausage patties with modified potassium chloride were more acceptable than those …


Evaluation Of The National Research Council (2001) Dairy Model And Derivation Of New Prediction Equations. 1. Digestibility Of Fiber, Fat, Protein, And Nonfiber Carbohydrate, R. R. White, Y. Roman-Garcia, J. L. Firkins, M. J. Vandehaar, L. E. Armentano, W. P. Weiss, T. Mcgill, R. Garnett, M. D. Hanigan Jan 2017

Evaluation Of The National Research Council (2001) Dairy Model And Derivation Of New Prediction Equations. 1. Digestibility Of Fiber, Fat, Protein, And Nonfiber Carbohydrate, R. R. White, Y. Roman-Garcia, J. L. Firkins, M. J. Vandehaar, L. E. Armentano, W. P. Weiss, T. Mcgill, R. Garnett, M. D. Hanigan

Department of Animal Science: Faculty Publications

Evaluation of ration balancing systems such as the National Research Council (NRC) Nutrient Requirementsseries is important for improving predictions of animal nutrient requirements and advancing feeding strategies. This work used a literature data set (n = 550) to evaluate predictions of total-tract digested neutral detergent fiber (NDF), fatty acid (FA), crude protein (CP), and nonfiber carbohydrate (NFC) estimated by the NRC (2001) dairy model. Mean biases suggested that the NRC (2001) lactating cow model overestimated true FA and CP digestibility by 26 and 7%, respectively, and under-predicted NDF digestibility by 16%. All NRC (2001) estimates had notable mean and …


The Effect Of Regular Or Reduced-Fat Distillers Grains With Solubles On Rumen Methanogenesis And The Rumen Bacterial Community, E. Castillo-Lopez, C. J. R. Jenkins, N. D. Aluthge, W. Tom, P. J. Kononoff, S. C. Fernando Jan 2017

The Effect Of Regular Or Reduced-Fat Distillers Grains With Solubles On Rumen Methanogenesis And The Rumen Bacterial Community, E. Castillo-Lopez, C. J. R. Jenkins, N. D. Aluthge, W. Tom, P. J. Kononoff, S. C. Fernando

Department of Animal Science: Faculty Publications

Aims: The effect of feeding dried distillers grains with solubles (DDGS) or reduced-fat DDGS (RFDG) on ruminal methanogenesis and the rumen bacterial community of dairy cattle was evaluated. Methods and Results: Treatments were CONT, a diet with no distillers grains; DG, inclusion of 20% DDGS; rfDG, inclusion of 20% RFDG; and MIX, inclusion of 10% DDGS and 10% RFDG. Methane emission was measured; rumen bacterial community was evaluated by sequencing the V4 region of the 16S rRNA gene. Total methane production remained unaffected. However, feeding distillers grains tended to reduce methanogenesis per unit of feed intake, decreased the abundance of …


Effect Of Feeding Distillers Grains During Different Phases Of Production And Addition Of Postmortem Antioxidants On Shelf Life Of Ground Beef1, B. D. Cleveland, J. O. Buntyn, A. L. Gronli, J. C. Macdonald, University Of Nebraska - Lincoln, G. A. Sullivan Jan 2017

Effect Of Feeding Distillers Grains During Different Phases Of Production And Addition Of Postmortem Antioxidants On Shelf Life Of Ground Beef1, B. D. Cleveland, J. O. Buntyn, A. L. Gronli, J. C. Macdonald, University Of Nebraska - Lincoln, G. A. Sullivan

Department of Animal Science: Faculty Publications

Feeding distillers grains (DGS) to cattle can increase PUFA concentration, increase lipid oxidation, and de- crease color stability of beef. The objective of this study was to evaluate the effects of feeding DGS and the post- mortem addition of antioxidants on the shelf life of ground beef products. Crossbred heifers (n = 64; initial BW = 225 kg) were supplemented with different amounts of modi- fied DGS (MDGS; 0.91 or 2.27 kg daily, DM basis) dur- ing backgrounding and finished on diets containing corn gluten feed or MDGS. Four beef shoulder clods from each dietary group were ground independently. Fatty …


In Situ Digestibility Of Residue Parts Of Corn Planted In Different Populations And Row Widths, Viviane B. Ferrari, Janessa J. Updike, Jana Harding Harding, Keith Glewen, Terry J. Klopfenstein, Jim C. Macdonald Jan 2017

In Situ Digestibility Of Residue Parts Of Corn Planted In Different Populations And Row Widths, Viviane B. Ferrari, Janessa J. Updike, Jana Harding Harding, Keith Glewen, Terry J. Klopfenstein, Jim C. Macdonald

Nebraska Beef Cattle Reports

Plant density can be changed by altering row width and/or number of plants within a row. The use of narrower rows at seeding may increase yield and reduce plant-toplant competition. Corn seeds were planted at 2 row widths (15 and 30- inch rows) and 3 plant populations (25,200, 35,000 and 54,000 seeds / acre). Samples of corn residue were collected 4 dates (October 8, October 24, November 5 and November 19) postharvest and separated into cob, stem, leaf and husk to determine changes in quality over time. Th e greatest plant population increased the NDF content and NDF digestibility of …