Aquaculture and Fisheries Commons^™

A Comparison Of Five Statistical Methods For Predicting Stream Temperature Across Stream Networks, Maike F. Holthuijzen

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The health of freshwater aquatic systems, particularly stream networks, is mainly influenced by water temperature, which controls biological processes and influences species distributions and aquatic biodiversity. Thermal regimes of rivers are likely to change in the future, due to climate change and other anthropogenic impacts, and our ability to predict stream temperatures will be critical in understanding distribution shifts of aquatic biota. Spatial statistical network models take into account spatial relationships but have drawbacks, including high computation times and data pre-processing requirements. Machine learning techniques and generalized additive models (GAM) are promising alternatives to the SSN model. Two machine learning …

Water Quality's Influence On The Occupancy Of Two Jeopardized Fishes: The Blackside Dace (Chrosomus Cumberlandensis) And The Cumberland Arrow Darter (Etheostoma Sagitta) In Northeast Tennessee, Brandon L. Yates

Morehead State Theses and Dissertations

A thesis presented to the faculty of the College of Science, Morehead State University, in partial fulfillment of the requirements for the Degree Master of Science by Brandon L. Yates July 5, 2017.

The Effect Of "Casitas" On Lobster Biology And Fishery Sustainability In The Bahamas, Lester George Gittens

Biological Sciences Theses & Dissertations

“Casitas” (artificial table-like structures) are a commercial fishing gear used to harvest Caribbean spiny lobster (Panulirus argus) in the Caribbean and in The Bahamas, where lobster is the most valuable fishery. Yet, casitas are largely unregulated in The Bahamas and they may threaten fishery sustainability through alteration of lobster growth, disease, or mortality rates and due to insufficient information concerning their number and location. Focusing on the lobster fishery in The Bahamas, my objectives were to: (1) investigate the mortality, growth, and susceptibility to disease of lobsters collected in casitas compared to wooden traps and those living in …

The Effects Of Gamma Irradiation Sterilization, Temperature, And Ph On The Antimicrobial Activity Of Epinecidin-1, Han-Ning Huang, Chang-Jer Wu, Jyh-Yih Chen

Journal of Marine Science and Technology–Taiwan

This study examined how different processing conditions affected the antibacterial activity of epinecidin-1 alone or in combination with deionized distilled water or KY jelly and evaluated its activity against methicillin resistant Staphylococcus aureus (MRSA) in a product development pipeline. High temperature and γ-irradiation (25 kGy) decreased antimicrobial activity of epinecidin-1, as determined by measuring minimal inhibitory concentrations (MICs) and minimal bactericidal concentrations (MBCs). However, epinecidin-1 exhibited high antimicrobial activity under low pH conditions. The pH stability and the wide spectrum of action against methicillin resistant Staphylococcus aureus (MRSA) may make epinecidin-1 peptide a suitable drug candidate. This research demonstrates the …

Verification Of Echosounder Measurements Of Thickness And Spatial Distribution Of Kelp Forests, Huamei Shao, Kenji Minami, Hokuto Shirakawa, Takashi Maeda, Toshiaki Ohmura, Yoshikazu Fujikawa, Norishige Yotsukura, Masahiro Nakaoka, Kazushi Miyashita

Journal of Marine Science and Technology–Taiwan

Acoustic methods can be used to assess seaweed meadows. The accuracy of the methods is a key factor in the estimation of seaweed distribution and conditions. We obtained and verified thickness and spatial distribution values measured using an echosounder. We determined the thickness of seaweed growing in the coastal waters off Higashidoori-mura, Aomori, Japan on June 5-6, 2013. Acoustic data were collected using an on-board quantitative echosounder at 120 kHz. The thickness was also directly measured at 14 points. The root mean square error (RMSE) of the thickness determined by the acoustic and direct methods was calculated. A survey to …

Columbia River Basin Salmon And Steelhead Long-Term Recovery Situation Assessment, Oregon Solutions, William D. Ruckelshaus Center

National Policy Consensus Center Publications

In the fall of 2012, after consulting with a wide range of salmon recovery partners, NOAA Fisheries asked Oregon Consensus and the William D. Ruckelshaus Center (university-based, neutral, third-party institutions devoted to promoting collaborative governance and consensusbased public policy) to conduct an independent, impartial situation assessment to explore regional views about how best to approach comprehensive, long-term salmon and steelhead recovery in the Basin. The centers assembled an Assessment Team comprised of practitioners and academics from Washington, Oregon and Idaho.

The Assessment Team conducted 206 semi-structured interviews with individuals selected for their knowledge of, engagement in, and/or concern for salmon …

Strong Population Structure Deduced From Genetics, Otolith Chemistry And Parasite Abundances Explains Vulnerability To Localized Fishery Collapse In A Large Sciaenid Fish, Protonibea Diacanthus, Laura Taillebois, Diane P. Barton, David Crook, Thor Saunders, Jonathan Taylor, Mark Hearnden, Richard J. Saunders, Stephen J. Newman, Michael J. Travers, David J. Welch, Alan Greig, Christine Dudgeon, Safia Maher, Jennifer Ovenden

Fisheries Research Articles

As pressure on coastal marine resources is increasing globally, the need to quantitatively assess vulnerable fish stocks is crucial in order to avoid the ecological consequences of stock depletions. Species of Sciaenidae (croakers, drums) are important components of tropical and temperate fisheries and are especially vulnerable to exploitation. The black-spotted croaker, Protonibea diacanthus, is the only large sciaenid in coastal waters of northern Australia where it is targeted by commercial, recreational and indigenous fishers due to its food value and predictable aggregating behaviour. Localized declines in the abundance of this species have been observed, highlighting the urgent requirement by managers …

Body Condition Of Endangered Humpback Chub In Relation To Temperature And Discharge In The Lower Colorado River, Forest P. Hayes, Michael J. Dodrill, Brandon S. Gerig, Colton Finch, William E. Pine Iii

Watershed Sciences Faculty Publications

Determining the population status of endangered Humpback Chub Gila cypha is a major component of the adaptive management program designed to inform operation of Glen Canyon Dam upstream from Grand Canyon, Arizona. In recent decades, resource managers have identified a portfolio of management actions (with intermittent implementation) to promote population recovery of Humpback Chub, including nonnative fish removal, changes in water release volumes and discharge ramping schedules, and reductions in hydropower peaking operations. The Humpback Chub population in Grand Canyon has increased over this same period, causal factors for which are unclear. We took advantage of unusual hydrology in the …

Characterizing Growth And Condition Of Endangered Humpback Chub In The Lower Colorado River, William E. Pine Iii, Brandon S. Gerig, Colton Finch

Watershed Sciences Faculty Publications

This paper is a preface to the two papers that follow in this issue. The two papers (by Pine et al. and Hayes et al.) use long-term fish sampling data from ongoing Humpback Chub monitoring efforts and archival otolith samples (from museums) collected in the lower Colorado and Little Colorado Rivers during periods of both cold- and warm-water conditions to assess whether Humpback Chub growth characteristics may have responded to changes in water temperature. Growth patterns are often of interest to resource managers because growth integrates a large range of environmental and ecological factors, including habitat conditions. Together, these papers …

Growth Of Endangered Humpback Chub In Relation To Temperature And Discharge In The Lower Colorado River, W. E. Pine Iii, K. Limburg, B. Gerig, Colton Finch, D. Chagaris, L. Coggins, D. Speas, D. A. Hendrickson

Watershed Sciences Faculty Publications

Assessments of growth can provide information needed to understand how fish populations respond to changing environmental conditions and management actions, including ecosystem experimentation. We estimated growth rates and parameter uncertainty from otoliths of endangered Humpback Chub Gila cypha from the Colorado River in Grand Canyon, Arizona. We then compared growth of Humpback Chub , age 2 that were 1) occupying the mainstem Colorado River during a period of variable discharge and cooler water temperatures (1980–1998; epoch 1), 2) occupying the Colorado River during a period of moderate discharge variability and warmer water (2001–2011; epoch 2), and 3) occupying the unregulated …

Behavioral Responses Of Pacific Lamprey To Alarm Cues, Laurie L. Porter, Michael C. Hayes, Aaron D. Jackson, Brian J. Burke, Mary L. Moser, R. Steven Wagner

All Faculty Scholarship for the College of the Sciences

Pacific lamprey (Entosphenus tridentatus), an anadromous ectoparasite, faces several challenges during adult migration to spawning grounds. Developingmethods to address these challenges is critical to the success of ongoing conservation efforts. The challenges are diverse, and include anthropogenic alterations to the ecosystem resulting in loss of habitat, impassable barriers such as dams, climate change impacts, and altered predator fields. We conducted a behavioral study to understand how adult migrating Pacific lamprey respond to potential alarm cues: White Sturgeon (Acipenser transmontanus), human saliva, decayed Pacific lamprey, and river otter (Lontra canadensis). Research has shown that some species of lamprey can be guided …

Landowner And Practitioner Perspectives On Private Land Conservation Programs, Michelle L. Lute, Caitlyn R. Gillespie, Dustin R. Martin, Joseph J. Fontaine

Nebraska Cooperative Fish and Wildlife Research Unit: Staff Publications

Efforts to reverse declines in native grasslands benefit from agricultural policies that encourage private land conservation. The U.S. Department of Agriculture’s Conservation Reserve Program (CRP) improved conservation across landscapes but enrollment has declined. We used sequential exploratory mixed methods to compare landowner and conservation practitioners’ perceptions, evaluate perceived benefits, and identify potential improvements to CRP. Focus groups of practitioners informed a quantitative survey of landowners who had properties >160 total acres in Nebraska. Results suggest potential misalignment in perceptions between practitioners and landowners. Practitioners were concerned that conservation, especially of wildlife, was secondary to profit. But the majority of landowners …

Regime Shifts And Panarchies In Regional Scale Social-Ecological Water Systems, Lance Gunderson, Barbara Cosens, Brian C. Chaffin, Craig Anthony (Tony) Arnold, Alexander K. Fremier, Ahjond S. Garmestani, Robin Kundis Craig, Hannah Gosnell, Hannah E. Birge, Craig R. Allen, Melinda Harm Benson, Ryan R. Morrison, Mark C. Stone, Joseph Hamm, Kristine Nemec, Edella C. Schlager, Dagmar Llewellyn

Nebraska Cooperative Fish and Wildlife Research Unit: Staff Publications

In this article we summarize histories of nonlinear, complex interactions among societal, legal, and ecosystem dynamics in six North American water basins, as they respond to changing climate. These case studies were chosen to explore the conditions for emergence of adaptive governance in heavily regulated and developed social-ecological systems nested within a hierarchical governmental system. We summarize resilience assessments conducted in each system to provide a synthesis and reference by the other articles in this special feature. We also present a general framework used to evaluate the interactions between society and ecosystem regimes and the governance regimes chosen to mediate …

Roe, Edd (Fa 1027), Manuscripts & Folklife Archives

Folklife Archives Finding Aids

Finding aid only for Folklife Archives Project 1027. Student folk studies project titled: “Fishing,” which includes interviews and survey sheets about fishing in the Pennyroyal Region of Kentucky. Sheets may include information about a fish, bait, joke, belief, informant’s name, and motif index number.

Population Structure, Connectivity, And Phylogeography Of Two Balistidae With High Potential For Larval Dispersal: Balistes Capriscus And Balistes Vetula, Luca Antoni

Dissertations

The gray triggerfish (Balistes capriscus) and the queen triggerfish (Balistes vetula) are two exploited reef fish distributed in tropical and temperate shelf waters of the Atlantic Ocean and the Mediterranean Sea. Both species are highly sedentary as adults but disperse pelagic larvae for extended periods of time potentially allowing connectivity across long distances under the action of oceanic currents. In this work population structure, phylogeography, and migration patterns were examined in the two species and contrasted with predictions of larval transport based on surface circulation data. A total of 1,017 gray triggerfish from twelve sampling localities …

Demographic Performance Of Brownlip Abalone : Exploration Of Wild And Cultured Harvest Potential, Lachlan W.S. Strain, Alexander Hesp, Frank Fabris, Anthony M. Hart

Fisheries Research Reports

This research provides the most comprehensive evaluation of Brownlip abalone (Haliotis conicopora) biology and fisheries assessment to date, thereby laying a solid foundation for future management of the Brownlip abalone fishery in Western Australia (WA). For wild populations, it has provided the most reliable estimates of natural and fishing mortality, size composition and the first to model growth throughout all stages of life.

Life History Of The Non-Native Invasive Red Lionfish (Pterois Volitans) In The Northern Gulf Of Mexico, Alexander Q. Fogg

Master's Theses

Invasive Red Lionfish (Pterois volitans) were first detected in the northern Gulf of Mexico (nGOM) in 2010 and since then their numbers have increased dramatically. From 2010 to 2015, more than 15,000 Red Lionfish were collected opportunistically from the nGOM for this study. Length and weight relationships differed significantly among ecoregions by sex and there was clear sexual dimorphism in size with males being larger and heavier. Red Lionfish age ranged from 0-4.5 years old and males achieved greater growth rate (K) and asymptotic maximum lengths (L_inf) compared to females and these parameters were also different …

Growth Patterns And Size-Group Interactions In Hatchery-Reared Age-0 Lake Sturgeon, Joseph M. Susco

All NMU Master's Theses

Raising lake sturgeon (Acipenser fulvescens) in hatcheries is an important tool for rehabilitation and conservation, but is expensive. When hatchery sturgeon do not grow large enough before stocking, their odds of survival decline significantly and resources are wasted. We investigated the potential limiting effect of large lake sturgeon on the growth rate of smaller conspecifics housed in the same tank, and the possibility of increasing growth rates by separating individuals into different size classes. We also examined plasma cortisol levels of the different size classes over time as an indicator of stress levels, and levels of free plasma …

From Disaster To Sustainability: The Story Of The Pacific Groundfish, Matthew Richards

All Graduate Plan B and other Reports, Spring 1920 to Spring 2023

This paper reviews the circumstances that led to the collapse of the Pacific groundfish fishery and the steps that fishery managers took to curb over-harvesting and bring the fishery back to sustainability. Fishery managers utilized various management tools such as a vessel buyback program, regulatory mechanisms, and market strategies to improve the available data on the fishery, improve safety for fishermen, and reduce harvest rates and overcapitalization. By employing a diverse range of measures, managers developed a system by with they successfully balanced conservation objectives and minimized adverse impacts to fishing communities. Overcapitalization and overharvest continue to degrade the health …

Evaluating Habitat-Based Niche Requirements And Potential Recruitment Bottlenecks For Imperiled Bluehead Sucker (Catostomus Discobolus), Bryan C. Maloney

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Changes to rivers that alter physical and thermal habitat may cause fish population abundance to decline, due to fewer individuals maturing and entering the adult population. The Weber River has become highly degraded with many dams and diversions altering fish habitat, river volume, velocity, and temperature, and limiting movement between reaches. Bluehead suckers (Catostomus discobolus) occupy only 47% of their historical range and the genetically-distinct Weber River (northern UT) population is declining and contains few young, juvenile fish. My objectives were to determine whether spawning and rearing habitat available in the Weber River may be limiting bluehead sucker …

Potential Influence Of A Marine Heatwave On Range Extensions Of Tropical Fishes In The Eastern Indian Ocean—Invaluable Contributions From Amateur Observers, Rodney C J Lenanton, Christopher E. Dowling, Kimberley A. Smith, David V. Fairclough, Gary Jackson

Fisheries Research Articles

Global changes to fish distributions are expected to continue in coming decades with predicted increases in ocean temperatures and the frequency of extreme climatic events. In the eastern Indian Ocean during the 2010/11 summer, sea surface temperatures 4–5 °C above average and an unseasonal, anomalously strong, Leeuwin Current (LC) triggered a “marine heatwave” along the west coast of Australia, with elevated water temperatures persisting for a further two years. Peak LC flows in summer/autumn transported pelagic early life history stages of summer-spawning coastal subtropical and tropical fishes southwards. This study examined whether the heatwave enabled the arrival, persistence and reproduction …

Determination Of Metal Concentrations In Sediments Of Big Walnut Creek, Hayley Quinn, Joan M. Esson, Kierra M. Lathrop, Michael A. Hoggarth, Kevin Svitana, Nathan Hess

Undergraduate Distinction Papers

The freshwater mussel populations in the lower stretch of Big Walnut Creek in central Ohio have been found to vary along the run of the creek with the lowest population of mussels in the middle stretch. One possible cause for the decline is the presence of contaminants in the sediments of the creek. In this study, nine Sites along the creek were examined. At each Site, sediment samples from a pool region and two quadrants from where mussels were also studied (the area of interest) were collected, along with pseudo feces, which is the waste mussels produce as they filter …

Ecosystem-Based Fisheries Management (Ebfm) Risk Assessment Of The Western Australian Abalone Managed Industry, F J. Webster, B Wise, Anthony M. Hart

WA Marine Stewardship Council report series

This report provides a comprehensive overview of the Western Australian (WA) Abalone Managed Fishery (AMF) and the outcomes from the 2015 ecological risk assessment of this fishery. The AMF targets three species of abalone greenlip (Haliotis laevigata), brownlip (H. conicopora) and Roe’s abalone (H. roei). Greenlip and brownlip abalone are primarily targeted on the south coast of WA, while Roe’s abalone is primarily targeted on the West Coast. Commercial fishing for abalone in WA has been undertaken since 1964.

Body Shape Diversification Of Pecos Pupfish (Cyprinodon Pecosensis) On Varying Habitats As Evaluated By Geometric Morphometrics, Qianna Xu

Masters Theses & Specialist Projects

During the 19th and 20th centuries, alterations to the Pecos River in New Mexico and Texas, USA due to anthropogenic activities, including damning and river channelization, vast water extraction for irrigation, as well as pollution of associated habitats, have greatly impacted the fish fauna within the drainage. One of the endemic fish species, the Pecos pupfish (Cyprinodon pecosensis), might be the most affected. Historically abundant and widespread large populations have been disrupted and became a series of small isolated subpopulations that persist at a few highly fragmented habitats restricted to a small area in southern New Mexico. The connectivity among …

Fish Community Assessment Of The Bonyic And Teribe Rivers Within The Naso-Teribe Territory Bocas Del Toro, Panama: Possible Implications Of Bonyic Dam., Shaylyn Austin

Independent Study Project (ISP) Collection

In the Changuinola/Teribe watershed of Bocas Del Toro, Panama, changes to the fluvial system due to the recently constructed Bonyic Dam have implications connected to the biodiversity of a UNESCO Biosphere Reserve and the livelihoods of thousands of people of the Naso-Teribe indigenous group. This study investigated the composition of fish communities in 6 study sites in 3 different areas in relation to the Bonyic Dam. A total of 318 individual fish were captured, representing 5 families and 10 species, using the cast net sampling method. The biodiversity was analyzed using Simpson’s Diversity Index, Evenness Index, species richness, and species …

Small-Scale Farming Of Sandfish (Holothuria Scabra) At Unguja Ukuu, Zanzibar, Claire Hacker

Independent Study Project (ISP) Collection

The biological and social components of sandfish farming were studied at Unguja Ukuu, Zanzibar. Measurement of temperature and depth, along with quadrat sampling of substrate and sea cucumbers, led to recommendations for future management of depth, biomass per area, disease and crabs, and substrate. Interviews revealed the role and potential benefits of sea cucumber farming for communities. Several barriers to, and complications with, the expansion of sea cucumber farming were also identified. This study provided information for improvement of this farm and hoped to spread knowledge of sandfish farming to Zanzibaris, who may benefit economically from the practice.

Making Sense Of Sustainable Seafood Certifications, Samantha Yoder

Honors Projects in Management

This project is aimed at tackling the issues regarding the varying seafood sustainability certifications currently in circulation. It aims to uncover the confusion, controversy, and differences that arise from the numerous governmental policies and organizations that issue seafood sustainability certifications. Furthermore, it will assess the primary motivations for each participant in the sustainable seafood supply chain, as the value derived from participation. Supply chain members considered include the fisheries that supply the seafood products, the various companies that issue the seafood certifications, the grocers that stock the numerous seafood products, the restaurants that serve sustainable seafood products, and the end …

Abalone Aquaculture In Western Australia, Department Of Fisheries

Fisheries Occasional Publications

Principles and considerations relating to management of abalone aquaculture in Western Australia

Zebrafish As A Model For Post-Traumatic Stress Disorder (Ptsd), Bernadette Johnson

Honors Theses

Post-traumatic stress disorder (PTSD) is a psychological disorder with limited treatment options. Molecular mechanisms that cause PTSD remain unclear due to a lack of viable animal models. Considering the behavioral similarities between zebrafish (Danio rerio) and humans, their social nature, and functional parallels between select brain regions, we hypothesized that zebrafish can demonstrate PTSD and that antioxidant treatment will prevent PTSD induction. To test this hypothesis, adult zebrafish were exposed to a traumatic event then were tested immediately and three weeks after the event. Traumatized fish exhibited non-social behavior, spending 7000 fold less time interacting with tank mates then their …

Management Strategy Evaluation For The Atlantic Surfclam (Spisula Solidissima) Using A Spatially Explicit, Vessel-Based Fisheries Model, Kelsey M. Kuykendall, Eric N. Powell, John M. Klink, Paula T. Moreno, Robert T. Leaf

CCPO Publications

The commercially valuable Atlantic surfclam (Spisula solidissima) is harvested along the northeastern continental shelf of the United States. Its range has contracted and shifted north, driven by warmer bottom water temperatures. Declining landings per unit of effort (LPUE) in the Mid-Atlantic Bight (MAB) is one result. Declining stock abundance and LPUE suggest that overfishing may be occurring off New Jersey. A management strategy evaluation (MSE) for the Atlantic surfclam is implemented to evaluate rotating closures to enhance Atlantic surfclam productivity and increase fishery viability in the MAB. Active agents of the MSE model are individual fishing vessels with …