Aquaculture and Fisheries Commons^™

Reef Fish And Coral Assemblages On Hospital Point And Near Bastimentos Island, Panama, Elaine Shen

Independent Study Project (ISP) Collection

Because worldwide declines coral reef health are of major concern, studying coral reefs through the lens of conservation efforts at local scales is essential for determining and monitoring effective policy measures. In the Bocas del Toro Archipelago, there are conflicts of interest between exploitative rapid tourism development, overfishing practices, and national efforts to conserve the local marine biodiversity. Coral and reef fish species abundance richness, diversity, evenness, and similarity were measured to see how coral and reef fish assemblages changed between protected and unprotected areas. A total of 329 fish and 322.5 square meters of benthos were analyzed using underwater …

Benthic Algae And Diatom Communities In Seagrass Meadows Under Three Different Human Impact Regimes In Bocas Del Toro, Panamá, Averyl Cheng

Independent Study Project (ISP) Collection

In Bocas del Toro, Panamá, widespread tourism has been the main source of revenue and has become an increasing threat to seagrass meadows and the organisms they support. This study aimed to investigate and describe algae and diatom communities under three different regimes of anthropogenic disturbance: high, medium and low human impact. The biodiversity was analyzed by measuring the algae and diatom assemblages with Shannon-Weiner’s Biodiversity Index, Evenness Index and Sorensen’s coefficient. The data obtained from these three diversity indices were compared to the areas along an anthropogenic disturbance gradient of high, medium and low impact. A total of 12 …

Mccardell, James (Fa 905), Manuscripts & Folklife Archives

Folklife Archives Finding Aids

Finding aid only for Folklife Archives Project 905. Project titled: “Fishing Beliefs.” Project includes note cards with brief descriptions of fishing beliefs in Indiana, Massachusetts and Rhode Island. Note cards include a brief description and informant’s name.

Krause, Janet L. (Fa 872), Manuscripts & Folklife Archives

Folklife Archives Finding Aids

Finding aid only for Folklife Archives Project 872. Paper titled: “Fishing Lore of Hadley Community.” Project includes survey sheets with brief descriptions of various aspects of fishing including methods, gear, terminology, sayings and beliefs. Sheets include a brief description of each topic, informant’s name and some illustrations.

Status Of Inshore Demersal Scalefish Stocks On The South Coast Of Western Australia. Nrm Project 12034 Final Report, Jeffrey Norriss, E.A Fisher, Sybrand Alexander Hesp, Gary Jackson, P.G Coulson, T Leary, A.W Thompson

Fisheries Research Reports

Inshore demersal scalefish in waters of 20-250 m depth in the South Coast Bioregion (SCB) are an important resource targeted by commercial, recreational and charter fishing sectors.

Review Of Potential Fisheries And Marine Management Impacts On The South-Western Australian White Shark Population, S M. Taylor, J M. Braccini, R Mcauley, Wayne J. Fletcher

Fisheries Research Reports

Following five fatal incidents involving white sharks (Carcharodon carcharias) off the lower west coast of Western Australia between September 2011 and July 2012, as well as other highly-publicised non-fatal encounters with this species, in 2012 the State Government funded several new initiatives to better understand white sharks in Western Australia and the likely effectiveness of any community safety interventions in Western Australian waters.

Consequences Of Hatch Phenology On Stages Of Fish Recruitment, David M. Bogner, Mark A. Kaemingk, Melissa R. Wuellner

Natural Resource Management Faculty Publications

Little is known about how hatch phenology (e.g., the start, peak, and duration of hatching) could influence subsequent recruitment of freshwater fishes into a population. We used two commonly sympatric fish species that exhibit different hatching phenologies to examine recruitment across multiple life stages. Nine yellow perch (Perca flavescens) and bluegill (Lepomis macrochirus) annual cohorts were sampled from 2004 through 2013 across larval, age-0, age-1, and age-2 life stages in a Nebraska (U.S.A.) Sandhill lake. Yellow perch hatched earlier in the season and displayed a more truncated hatch duration compared to bluegill. The timing of hatch influenced recruitment dynamics for …

Characterization, Development And Multiplexing Of Microsatellite Markers In Three Commercially Exploited Reef Fish And Their Application For Stock Identification, Laura Taillebois, Christine Dudgeon, Safia Maher, David Crook, Thor Saunders, Diane P. Barton, Jonathan A. Taylor, David J. Welch, Stephen J. Newman, Michael J. Travers, Richard J. Saunders, Jennifer Ovenden

Fisheries Research Articles

Thirty-four microsatellite loci were isolated from three reef fish species; golden snapper Lutjanus johnii, blackspotted croaker Protonibea diacanthus and grass emperor Lethrinus laticaudis using a next generation sequencing approach. Both IonTorrent single reads and Illumina MiSeq paired-end reads were used, with the latter demonstrating a higher quality of reads than the IonTorrent. From the 1–1.5 million raw reads per species, we successfully obtained 10–13 polymorphic loci for each species, which satisfied stringent design criteria. We developed multiplex panels for the amplification of the golden snapper and the blackspotted croaker loci, as well as post-amplification pooling panels for the grass …

A Landscape Approach To Determining And Predicting Juvenile Coho Salmon (Oncorhynchus Kisutch) Movement Timing And Growth Patterns Prior To Ocean Entry, Amelia Lee Johnson

Dissertations and Theses

Coho salmon (Oncorhynchus kisutch) rely on unique habitats during the winter season, which may dictate how much individuals may grow and when migration from freshwater rearing habitat to the ocean occurs. Here I analyze movement timing and growth patterns for coho salmon through a field-based study and a literature review. For the field portion, I examined hatchery-stocked juvenile coho salmon across four stream basins in the Russian River watershed, California to determine the relative importance of climate, landscape, and fish size metrics in predicting movement and growth patterns over a winter rearing and spring smolt outmigration time period …

Improving Spatial Prioritisation For Remote Marine Regions: Optimising Biodiversity Conservation And Sustainable Development Trade-Offs, Cordelai H. Moore, Ben T. Radford, Hugh P. Possingham, Andrew Heyward, Romola R. Stewart, Matthew E. Watts, Jim Prescott, Stephen J. Newman, Euan S. Harvey, Rebecca Fisher, Clay W. Bryce, Ryan J. Lowe, Oliver Berry, Alexis Espinosa- Gayosso, Errol Sporer, Thor Saunders

Fisheries Research Articles

Creating large conservation zones in remote areas, with less intense stakeholder overlap and limited environmental information, requires periodic review to ensure zonation mitigates primary threats and fill gaps in representation, while achieving conservation targets. Follow-up reviews can utilise improved methods and data, potentially identifying new planning options yielding a desirable balance between stakeholder interests. This research explored a marine zoning system in north-west Australia–a biodiverse area with poorly documented biota. Although remote, it is economically significant (i.e. petroleum extraction and fishing). Stakeholder engagement was used to source the best available biodiversity and socio-economic data and advanced spatial analyses produced 765 …

Does The Seal Licensing System In Scotland Have A Negative Impact On Seal Welfare?, Laetitia Nunny, Fritha Langford, Mark P. Simmonds

Aquaculture and Fisheries Collection

This study examined the licensing system that permits seal shooting in Scotland, which was established under Part 6 Conservation of Seals of the Marine (Scotland) Act 2010. Four approaches were used: data were collated and analyzed from both the Scottish Government and Scottish Marine Animal Stranding Scheme; a survey was sent to current license holders and informal interviews were conducted with key stakeholder types. Between February 2011 and the end of October 2015, 1229 gray seals, and 275 common seals were reported shot under license to the Scottish Government. The numbers of seals reported as shot has reduced year-on-year since …

Burt Lake Watershed Planning Project: Biological Management Plan, Jenna Lyons

Honors Projects

In order to provide a management plan for Burt Lake, a survey was conducted from July to August in which potential habitat was surveyed for the reintroduction of Lake Sturgeon (Acipenser fulvescens). This was done so by evaluating physical parameters of Burt Lake and the surrounding tributaries, presence and absence of invasive plants and unknown algae, and presence of crayfish. For sturgeon habitat, sediment and physical properties (light, temperature, pH, turbidity, dissolved oxygen, conductivity) were sampled on 14 sites in Burt Lake . Similar measurements and samples were also taken in 3 sites on each of the surrounding tributaries, with …

Functional Characteristics And Quality Of Ultraviolet-Irradiated Partially Insoluble Fish Gelatin As Shark Fin Analogs, Yu Wei Chang, Chang Shu Liu, Chia Chi Chiang, Jenn Shou Tsa, Wen Chieh Sung

Journal of Marine Science and Technology–Taiwan

Tilapia skin gelatin powder was used to parpare shark fin analogs. Experimental samples were exposed to ultraviolet (UV) irradiation at 612, 1224, 1836, 2448, 3060, and 3672 mJ/cm2 . Fish gelatin exposed to UV at 1836 mJ/cm2 became partially insoluble. UV exposure reduced the transmittance of amide I at 1630 cm-1, amide II at 1480-1575 cm-1, and amide III at 1237 cm-1 in Fourier transform infrared spectra. UV treatment at 612 mJ/cm2 significantly reduced the gel strength of fish gelatin, whereas higher UV exposure increased the gel strength. UV irradiation at up to 3060 mJ/cm2 increased the b* value (yellowness) …

Panarchy Use In Environmental Science For Risk And Resilience Planning, David G. Angeler, Craig R. Allen, Ahjond S. Garmestani, Lance H. Gunderson, Igor Linkov

Nebraska Cooperative Fish and Wildlife Research Unit: Staff Publications

Environmental sciences have an important role in informing sustainable management of built environments by providing insights about the drivers and potentially negative impacts of global environmental change. Here, we discuss panarchy theory, a multi-scale hierarchical concept that accounts for the dynamism of complex socio-ecological systems, especially for those systems with strong cross-scale feedbacks. The idea of panarchy underlies much of system resilience, focusing on how systems respond to known and unknown threats. Panarchy theory can provide a framework for qualitative and quantitative research and application in the environmental sciences, which can in turn inform the ongoing efforts in sociotechnical resilience …

Movement, Habitat Use, Reproduction, And Commercial Harvest Of Paddlefish In Lake Dardanelle, Arkansas, Adam Geik

Theses and Dissertations from 2016

Paddlefish Polyodon spathula are a valuable commercial species throughout much of their range including Lake Dardanelle, one of the most important commercial paddlefish fisheries in Arkansas. While fecundity, mortality, and age and growth of paddlefish stocks in Lake Dardanelle have been assessed previously, information on their movements, habitat utilization, and commercial harvest rates is lacking. To help fill this information gap, 39 paddlefish were tracked a minimum of once per month from October 2014 through September 2015. Habitat selection was determined for eight macrohabitat types and four bathymetric habitat types by comparing percent usage to percent availability. Four high-use (≥10%) …

Improving Efficiency In Generating Submissions And Consistency Of Outcomes For Marine Stewardship Council (Msc) Based Assessments, Warrick Fletcher, Daniel J. Gaughan, Lynda Bellchambers Dr

Fisheries Research Reports

The prevalence of fishery certification schemes and associated ecolabels has grown over the last ten years with numerous ecolabels now in the marketplace e.g. Friends of the Sea, Naturland, SAI Global Trust (Parkes et al. 2010, Washington and Ababouch 2011, Ward and Phillips 2013). However, one of the most prominent and well regarded, particularly by eNGOs, is the Marine Stewardship Council (MSC) (Gutiérrez et al. 2012, Ponte 2012, Bush et al. 2013, Ward and Phillips 2013) which accounts for greater than 10 % of annual global harvest of wild capture fisheries (MSC 2014b).

Gascoyne Demersal Scalefish Resource : Draft Harvest Strategy, 2016-2021. Version 1.0, Western Australia. Dept. Of Fisheries.

Fisheries Management Papers

Harvest strategies for aquatic resources managed by the Western Australian Department of Fisheries (the Department) are formal documents prepared to support the decision-making processes and ensure these processes are consistent with the principles of Ecologically Sustainable Development (ESD; Fletcher 2002) and Ecosystem Based Fisheries Management (EBFM; Fletcher et al. 2010). The objectives of ESD are reflected in the objects of the Fish Resources Management Act 1994 (FRMA), Section 3, and the draft Aquatic Resources Management Bill 2015 (ARMB), Clause 9, which will replace the FRMA once enacted.

North Coast Demersal Scalefish Resource : Draft Harvest Strategy, 2016-2021. Version 1.0, Western Australia. Dept. Of Fisheries

Fisheries Management Papers

Harvest strategies for aquatic resources managed by the Western Australian Department of Fisheries (the Department) are formal documents prepared to support decision-making processes and ensure these processes are consistent with the principles of Ecologically Sustainable Development (ESD; Fletcher 2002) and Ecosystem Based Fisheries Management (EBFM; Fletcher et al. 2010). The objectives of ESD are reflected in the objects of the Fish Resources Management Act 1994 (FRMA), Section 3, and the draft Aquatic Resources Management Bill 2015 (ARMB), Clause 9, which will replace the FRMA once enacted.

North Coast Demersal Scalefish Resource : Draft Harvest Strategy : 2016 – 2021 : Version 1.0, Department Of Fisheries

Fisheries Management Papers

No abstract provided.

Gascoyne Demersal Scalefish Resource : Draft Harvest Strategy : 2016 – 2021 : Version 1.0, Department Of Fisheries

Fisheries Management Papers

No abstract provided.

Growth And Reproduction Of Southern Flounder (Paralichthys Lethostigma) In The North-Central Gulf Of Mexico, Morgan Marie Corey

Master's Theses

Southern Flounder Paralichthys lethostigma is the most commonly harvested flatfish in the north-central Gulf of Mexico (GOM) and supports a major inshore recreational fishery, yet knowledge of the species’ life history is greatly limited. The objective of this research was to describe the growth and reproduction of Southern Flounder in the Mississippi stock. Fish were collected during September 2014 to March 2016 using primarily recreational fishing techniques. Otoliths (n = 313) were sectioned to estimate age, and multiple length-at-age models were fit to total length (TL, mm) and age estimate (y) data. Gonadal tissue samples (n = 221) …

Development Of Genomic Resources For The Evaluation Of Red Snapper, An Emerging Species Candidate For Marine Aquaculture And Stock Enhancement, Adrienne Elise Norrell

Master's Theses

The northern red snapper (Lutjanus campechanus) is a highly targeted reef fish candidate for marine aquaculture and stock enhancement in the southern United States. This work aimed to develop genomic resources for the genetic management of aquaculture programs and to investigate population structure using high-throughput sequencing technologies. Eighty-four new microsatellite markers were developed through screening of Illumina paired-end sequencing reads. Microsatellite loci and Single Nucleotide Polymorphisms (SNPs) generated through Restriction Site Associated DNA (RAD) sequencing were assayed in 5 outbred full-sib families to construct a high-density linkage map of the red snapper genome. The map consists of 7,964 …

Automated Detection Of Deep-Sea Animals, Dallas J. Hollis, Duane Edgington, Danelle Cline

STAR Program Research Presentations

The Monterey Bay Aquarium Research Institute routinely deploys remotely operated underwater vehicles equipped with high definition cameras for use in scientific studies. Utilizing a video collection of over 22,000 hours and the Video Annotation and Reference System, we have set out to automate the detection and classification of deep-sea animals. This paper serves to explore the pitfalls of automation and suggest possible solutions to automated detection in diverse ecosystems with varying field conditions. Detection was tested using a saliency-based neuromorphic selective attention algorithm. The animals that were not detected were then used to tune saliency parameters. Once objects are detected, …

An Update Of The Department Of Fisheries, Western Australia, Invertebrate And Reef Health Research And Monitoring At Cocos (Keeling) Islands, S.N Evans, N Konzewitsch, Lynda Bellchambers Dr

Fisheries Research Reports

The Cocos (Keeling) Islands are an Australian External Territory located in the Indian Ocean (12° 12" S, 96° 54" E). The group is comprised of two separate coral atolls, consisting of 27 islands. The southern atoll consists of 26 islands, surrounding a shallow lagoon, two of which are inhabited with a total population of approximately 600 people. Since 2002, a Service Delivery Arrangement (SDA) has been in place between the Department of Fisheries, Western Australia (DoF) and the Commonwealth Government of Australia to manage the fish resources of the Cocos (Keeling) Islands (CKI).

Impacts Of Habitat Fragmentation On The Cranial Morphology Of A Threatened Desert Fish (Cyprinodon Pecosensis), Michael Chaise Gilbert

Masters Theses & Specialist Projects

Drastic alterations to the North American Southwest’s hydrology have highly influenced resident fish communities. In New Mexico and Texas, the Pecos River has been severely altered as a result of water manipulation, isolating backwaters and various habitats that were once connected to the main river. Cyprinodon pecosensis (Pecos pupfish) has been highly impacted due to the effects of anthropogenic water manipulation, as well as species introductions. Cyprinodon pecosensis populations have become isolated and scattered, residing in sinkholes, remnant lakes, and static backwaters, thus creating numerous micropopulations. The purpose of this study was to assess the morphological variation in cranial features …

Northern Demersal Scalefish Managed Fishery, Department Of Fisheries

Fisheries Occasional Publications

An operators’ guide to the management arrangements 2016 Version 2.0

Diversity And Distribution Of Diatom Endosymbionts In Amphistegina Spp. (Foraminifera) Based On Molecular And Morphological Techniques, Kwasi H. Barnes

USF Tampa Graduate Theses and Dissertations

Diatoms associated with foraminifers of the genus Amphistegina were assessed using a combination of morphological and molecular techniques. These included: 1) microscopic identification of diatoms cultured from the host, 2) sequencing of portions of the small subunit of the ribosomal RNA gene (18S) and the large subunit of the ribulose-1,5-bisphosphate carboxylase/oxygenase [i.e., RubisCO] gene (rbcL) from DNA extracted directly from the Amphistegina hosts and also from diatoms cultured from these hosts, and 3) denaturing gradient gel electrophoresis (DGGE) profiles of rbcL and internal transcribed spacer 1 (ITS1) PCR amplicons from DNA extracted directly from …

Temperature-Dependent Pathogenicity Of Grouper Iridovirus Of Taiwan (Tgiv), Hsin-I Liu, Ying-Chu Lin, Pinwen Peter Chiou, Hsin-Yiu Chou

Journal of Marine Science and Technology–Taiwan

Grouper iridovirus of Taiwan (TGIV) is one of the most devastating infectious pathogens of grouper fry in Taiwan. As environmental temperature often plays an important role in the outbreak of diseases, we assayed the impact of different temperatures (18, 25 and 32℃) on TGIV infection both in vitro and in vivo. Cytopathic effect (CPE) characterized as cell rounding and lysis were observed in TGIV-infected grouper SB (swim bladder) cells at 25℃ and 32℃, but was absent at 18℃. With temperature rising to 32℃, the presence of pycnotic nuclei and chromatin margination became prominent in the infected cells, indicating an apoptotic …

Ld50 Of Gamma Ray Irradiation Employed In Sulawesi Medaka Oryzias Woworae, Chih-Yang Huang, Bin Lin, Kang-Wei Chang, Shyn-Shin Sheen

Journal of Marine Science and Technology–Taiwan

This experiment aims to estimate the median lethal doses (LD50) of irradiation (IR) for the matured freshwater oviparous ornamental fish, Sulawesi medaka (Oryzias woworae). Both male and female were treated with 0, 10, 20, 25, 30, 35, 40, 60, 200,400, 600 and 800 Gy. Each treatment was conducted in triplicate. The 96, 168 and 336 h- LD50 of male and female were 643.1, 47.0, 33.8 and 646.8, 42.5, 35.7 Gy, respectively.

Slides: The Era Of River Anthropology: Social And Eco-Hydrological Science Connections And Capacity For Environmental Flows: Us Case Studies, Joseph E. Flotemersch, Lisa-Perras Gordon

Coping with Water Scarcity in River Basins Worldwide: Lessons Learned from Shared Experiences (Martz Summer Conference, June 9-10)

Presenter: Joe Flotemersch, US Environmental Protection Agency (EPA), Office of Research and Development

21 slides