Aquaculture and Fisheries Commons^™

Spatial And Temporal Activity Patterns Among Sympatric Tree-Roosting Bat Species In An Agriculturally Dominated Great Plains Landscape, Christopher Fill, Craig R. Allen, John F. Benson, Dirac Twidwell

Nebraska Cooperative Fish and Wildlife Research Unit: Staff Publications

In agroecosystems, bats can provide a critical ecosystem service by consuming night-flying insect pests. However, many bats also face intense population pressures from human landscape modification, global change and novel diseases. To better understand the behavioral activity of different bat species with respect to space, time, habitat, and other bat species in this environment, we investigated species correlations in space and time over row crop agricultural fields. We used acoustic grids to document spatial and temporal co-occurrence or avoidance between bats and recorded eight species across the 10 field sites we sampled. All species significantly overlapped in two-dimensional space and …

Diverse Portfolios: Investing In Tributaries For Restoration Of Large River Fishes In The Anthropocene, Kristen L. Bouska, Brian D. Healy, Michael J. Moore, Corey G. Dunn, Jonathan J. Spurgeon, Craig P. Paukert

Nebraska Cooperative Fish and Wildlife Research Unit: Staff Publications

Rehabilitation of large Anthropocene rivers requires engagement of diverse stakeholders across a broad range of sociopolitical boundaries. Competing objectives often constrain options for ecological restoration of large rivers whereas fewer competing objectives may exist in a subset of tributaries. Further, tributaries contribute toward building a “portfolio” of river ecosystem assets through physical and biological processes that may present opportunities to enhance the resilience of large river fishes. Our goal is to review roles of tributaries in enhancing mainstem large river fish populations. We present case histories from two greatly altered and distinct large-river tributary systems that highlight how tributaries contribute …

Bats Increased Foraging Activity At Experimental Prey Patches Near Hibernacula, Winifred F. Frick, Yvonne A. Dzal, Kristin A. Jonasson, Michael D. Whitby, Amanda M. Adams, Christen Long, John E. Depue, Christian M. Newman, Craig K. R. Willis, Tina L. Cheng

Nebraska Cooperative Fish and Wildlife Research Unit: Staff Publications

1. Emerging infectious diseases in wildlife can threaten vulnerable host populations. Actions targeting habitat improvements to aid population resilience and recovery may be beneficial long-term strategies, yet testing the efficacy of such strategies before major conservation investments are made can be challenging.

2. The disease white-nose syndrome (WNS) has caused severe declines in several species of North American hibernating bats. We tested a novel conservation approach targeted at improving foraging conditions near bat hibernacula by experimentally manipulating insect density in the pre-hibernation fattening period and spring emergence recovery period. We measured foraging (feeding buzzes) and echolocation activity of little brown bats Myotis …

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Evaluating Benthic Macroinvertebrate Populations In Response To Scouring Events In The Trinity River, Ca, Liam Hay, Michael W. O'Neil, Chloe Pieper-Wasem

Environmental Science & Management Senior Capstones

River systems across California have been impacted by appurtenant structures such as dams and diversions. These structures have had an adverse impact on Benthic invertebrate (BMI) communities by regulating river systems and changing the natural hydraulic pulses that follow seasonal precipitation. Benthic invertebrates are a critical food resource for salmonids and serve as an indicator of ecosystem health. Our study was interested in seeing the effects of scouring events on BMI in the Trinity River of Trinity County, C.A. Following a large precipitation event that occurred in the region in December 2022, an influx of water entered the river through …

Ancient Bears Provide Insights Into Pleistocene Ice Age Refugia In Southeast Alaska, Flavio Augusto Da Silva Coelho, Stephanie Gill, Crystal M. Tomlin, Marilena Papavassiliou, Sean D. Farley, Joseph A. Cook, Sarah A. Sonsthagen, George K. Sage, Timothy H. Heaton, Sandra L. Talbot, Charlotte Lindqvist

Nebraska Cooperative Fish and Wildlife Research Unit: Staff Publications

During the Late Pleistocene, major parts of North America were periodically covered by ice sheets. However, there are still questions about whether ice-free refugia were present in the Alexander Archipelago along the Southeast (SE) Alaska coast during the last glacial maximum (LGM). Numerous subfossils have been recovered from caves in SE Alaska, including American black (Ursus americanus) and brown (U. arctos) bears, which today are found in the Alexander Archipelago but are genetically distinct from mainland bear populations. Hence, these bear species offer an ideal system to investigate long-term occupation, potential refugial survival and lineage turnover. Here, we present genetic …

Movement And Genomic Methods Reveal Mechanisms Promoting Connectivity In A Declining Shorebird: The Lesser Yellowlegs, K. Christie, R. E. Wilson, J. A. Johnson, C. Friis, C. M. Harwood, L. A. Mcduffie, E. Nol, Sarah A. Sonsthagen

Nebraska Cooperative Fish and Wildlife Research Unit: Staff Publications

No abstract provided.

Fecal Dna Metabarcoding Shows Credible Short-Term Prey Detections And Explains Variation In The Gut Microbiome Of Two Polar Bear Subpopulations, M. Franz, L. Whyte, T. C. Atwood, D. Menning, Sarah A. Sonsthagen, S. L. Talbot, K. L. Laidre, E. Gonzalez, M. A. Mckinney

Nebraska Cooperative Fish and Wildlife Research Unit: Staff Publications

No abstract provided.

River Report. State Of Lower St. Johns River Basin, Florida: Water Quality, Fisheries, Aquatic Life, Contaminants, 2023, Environmental Protection Board, Jacksonville Florida, University Of North Florida, Jacksonville University, Gerry Pinto, Brian P. Zoellner, Christopher Baynard, Gretchen Bielmyer-Fraser, Dale Casamatta, Charles Closmann, Nisse Goldberg, Ashley Johnson, Scott Jones, William Penwell, Radha Pyati, Adam Rosenblatt

State of the River Report

No abstract provided.

Fairy Shrimp (Anostraca) In The Vernal Pools Of Eastern Washington, Megan Garvey

EWU Masters Thesis Collection

Vernal pools are ephemeral wetlands that retain water annually from winter and spring precipitation and snowmelt but are dry the rest of the year. Though important habitats and sources of freshwater biodiversity, they are little accounted for in wetland conservation and restoration practices. Like much of the world’s wetlands, they have seen a significant decline from anthropogenic impacts and conversion for alternative land use. Pools are also at significant risk due to the impacts of climate change and invasive species. These small temporary water bodies perform vital ecosystem services and are host to rare and endemic species. Anostraca, or fairy …

Aquaculture In Africa: Aquatic Animal Welfare, Impact On The Environment And The Sustainability Of The Sector, Mwenda M. Mbaka, Janice H. Cox, Stephen Ronan

Aquaculture

The African aquaculture sector recorded the fastest growth in the world between 2006-2018, averaging 10% or more, and is expected to partially fill the growing fish supply-demand gap up to 2063. In 2018, there were about 1.2 million aquafarmers across the continent, an increase from 920 thousand in 2014. According to the African Development Bank, expansion of aquaculture in Africa is hampered by "the overwhelming predominance of tilapia farming, which relies heavily on the production of fingerlings from a limited number of genetically improved strains that are resistant to the many diseases affecting this species, and on the production of …

Natural Resource System Size Can Be Used For Managing Recreational Use, Derek S. Kane, Kevin L. Pope, Keith D. Koupal, Mark A. Pegg, Christopher J. Chizinski, Mark A. Kaemingk

Nebraska Cooperative Fish and Wildlife Research Unit: Staff Publications

Outdoor recreation provides societal benefits that are often measured by the amount of use natural resource systems receive. Still, the amount of resource use natural resource systems receive is often unknown or unstudied. Monitoring and quantifying resource use is often logistically difficult and costly but is paramount to optimize societal benefits. Identifying a simple and readily available metric that can indicate the quantity of recreational use of natural resource systems would benefit natural resource management. Using recreational angler participation data during an 11-year study period from 73 public waterbodies in Nebraska, USA, we developed a resource size-use model that demonstrates …

Low Levels Of Hybridization Between Sympatric Cold-Water-Adapted Arctic Cod And Polar Cod In The Beaufort Sea Confirm Genetic Distinctiveness, Robert E. Wilson, Sarah A. Sonsthagen, Philip Lavretsky, Andrew Majewski, Einar Árnason, Katrín Halldórsdóttir, Axel W. Einarsson, Kate Wedemeyer, Sandra L. Talbot

Nebraska Cooperative Fish and Wildlife Research Unit: Staff Publications

As marine ecosystems respond to climate change and other stressors, it is necessary to evaluate current and past hybridization events to gain insight on the outcomes and drivers of such events. Ancestral introgression within the gadids has been suggested to allow cod to inhabit a variety of habitats. Little attention has been given to contemporary hybridization, especially within cold-water-adapted cod (Boreogadus saida Lepechin, 1774 and Arctogadus glacialis Peters, 1872). We used whole-genome, restriction-site associated, and mitochondrial sequence data to explore the degree and direction of hybridization between these species where previous hybridization had not been reported. Although nearly identical …

Nabat Ml: Utilizing Deep Learning To Enable Crowdsourced Development Of Automated, Scalable Solutions For Documenting North American Bat Populations, Ali Khalighifar, Benjamin S. Gotthold, Erin Adams, Jenny Barnett, Laura O. Beard, Eric R. Britzke, Paul A. Burger, Kimberly Chase, Zackary Cordes, Paul M. Cryan, Emily Emily, Christopher T. Fill, Scott E. Gibson, G. Scott Haulton, Kathryn M. Irvine, Lara S. Katz, William L. Kendall, Christen A. Long, Oisin Mac Aodha, Tessa Mcburney, Sara Mccarthy, Matthew W. Mckown, Joy O'Keefe, Lucy D. Patterson, Kristopher A. Pitcher, Matthew Rustand, Jordi L. Segers, Kyle Seppanen, Jeremy L. Siemers, Christian Stratton, Bethany R. Straw, Theodore J. Weller, Brian E. Reichert

Nebraska Cooperative Fish and Wildlife Research Unit: Staff Publications

1. Bats play crucial ecological roles and provide valuable ecosystem services, yet many populations face serious threats from various ecological disturbances. The North American Bat Monitoring Program (NABat) aims to use its technology infrastructure to assess status and trends of bat populations, while developing innovative and community-driven conservation solutions.

2. Here, we present NABat ML, an automated machine-learning algorithm that improves the scalability and scientific transparency of NABat acoustic monitoring. This model combines signal processing techniques and convolutional neural networks (CNNs) to detect and classify recorded bat echolocation calls. We developed our CNN model with internet-based computing resources (‘cloud environment’), and …

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The Ddt-Induced Decline Influenced Genetic Diversity In Naturally Recovered Peregrine Falcons (Falco Peregrinus) Nesting Within The Alaska Arctic And Eastern Interior, Sarah A. Sonsthagen,, Ted Swem, Skip Ambrose, Melanie J. Flamme, Clayton M. White, George K. Sage, Sandra L. Talbot

Nebraska Cooperative Fish and Wildlife Research Unit: Staff Publications

We assessed the influence of the severe mid-20th century population decline on genetic diversity in nonaugmented Peregrine Falcon Falco peregrinus populations nesting within the Alaska Arctic and eastern Interior. Microsatellite and mitochondrial DNA (mtDNA) data were analysed for Peregrine Falcons sampled from three periods: pre-decline, decline and post-decline. The influence of the decline on genetic diversity differed between the two locales. The Alaska Arctic was characterized by shifts in mtDNA haplotype frequencies, increased inbreeding coefficient, reduction in effective population size and increase in private haplotypes, and a signature of post-decline population growth was detected; by contrast, the eastern Interior showed …

Blue Resilience: Is There A Need For An Alaskan Coastal Career Development Framework?, Jared Fuller

All Theses And Dissertations

Youth career outmigration has increased in Alaska’s coastal communities in the last few decades. The ocean and ocean-adjacent industries that comprise the blue economy make up the majority of the employment options in places have experienced declines within these regions which has been attributed to the outward movement of young people. The dynamic history of Alaska has had specific impacts with regards to Alaskan coastal communities, their ocean-resource economies, and thus, the potential for young people to find career paths within them. Potential economic-resource vulnerabilities could be mapped along with the complex systems to help build resilience within those communities. …

Valuing Angling On Reservoirs Using Benefit Transfer, Richard T. Melstrom, Mark A. Kaemingk, Nicholas W. Cole, John C. Whitehead, Christopher J. Chizinski, Kevin L. Pope

Nebraska Cooperative Fish and Wildlife Research Unit: Staff Publications

Economic assessments are rarely applied to inland recreational fisheries for management purposes, especially when compared to fish, habitat, and creel assessments, yet economic assessments can provide critical information for management decisions. We provide a brief overview of economic value, key terminology, and existing economic techniques to address these issues. Benefit transfer, a technique used to measure economic value when an original analysis is not practicable, is conducted by drawing on existing estimates of economic value in similar contexts. We describe an application of benefit transfer to measure the economic value of several recreational fisheries in Nebraska, USA. We examine two …

Trout Responses To Stocking Rates And River Discharge Within A Southeastern U.S. Hydropeaking Tailwater, Jonathan J. Spurgeon, Joseph Kaiser, Christy Graham, Steve Lochmann

Nebraska Cooperative Fish and Wildlife Research Unit: Staff Publications

Freshwater fish populations often exist in systems characterized by novel ecological processes resulting from human alteration. Salmonid populations embedded within coldwater sections of warmwater rivers are spatially constrained by habitat availability. Tailwater fish contend with fluctuating river discharges and density-dependent processes associated with fish stocking and exploitation. Salmonid populations sustained through stocking versus natural reproduction may respond differently to changes in hydrologic patterns (e.g., hydropeaking) as well as declines in fish abundance. We assessed differences between stocked (Rainbow Trout Oncorhynchus mykiss) and naturalized (Brown Trout Salmo trutta) trout populations in Greers Ferry tailwater, Arkansas, regarding (1) spatial and …

Species-Specific Responses To Landscape Features Shaped Genomic Structure Within Alaska Galliformes, Sarah A. Sonsthagen, Robert E. Wilson, Sandra L. Talbot

Nebraska Cooperative Fish and Wildlife Research Unit: Staff Publications

Aim: Connectivity is vital to the resiliency of populations to environmental change and stochastic events, especially for cold-adapted species as Arctic and alpine tundra habitats retract as the climate warms. We examined the influence of past and current landscapes on genomic connectivity in cold-adapted galliformes as a critical first step to assess the vulnerability of Alaska ptarmigan and grouse to environmental change. We hypothesize that the mosaic of physical features and habitat within Alaska promoted the formation of genetic structure across species.

Location: Alaska, United States of America.

Taxa: Ptarmigan and Grouse (Galliformes: Tetraoninae).

Methods: We collected double digest restriction-site- …

River Report. State Of The Lower St. Johns River Basin, Florida: Water Quality, Fisheries, Aquatic Life, Contaminants, 2022., Environmental Protection Board, City Of Jacksonville, University Of North Florida, Jacksonville University, Gerry Pinto, Gretchen Bielmyer-Fraser, John Burr, Dale Casamatta, Charles Closmann, Brian P. Zoellner, Ashley Johnson, An-Phong Le, William Penwell, Radha Pyati

State of the River Report

No abstract provided.

Heterogeneity Of Recreationists In A Park And Protected Area, Olivia A. Darugna, Mark A. Kaemingk, Christopher J. Chizinski, Kevin L. Pope

Nebraska Cooperative Fish and Wildlife Research Unit: Staff Publications

Limited information and resources have caused many parks and protected areas (PPAs) to functionally manage recreationists as a single homogeneous group, despite potential negative social and ecological consequences. We aimed to evaluate the homogeneity of recreationists at the Valentine National Wildlife Refuge (NWR) by 1) quantifying frequencies of consumptive (i.e., hunting), intermediate-consumptive (i.e., fishing), and non-consumptive recreational-activity groups (e.g., wildlife viewing), and 2) evaluating sociodemographic differences among these groups. We used onsite surveys to determine that Valentine NWR supports heterogeneous groups of recreationists. The intermediate-consumptive group was most frequent (77% of all parties). All three recreational-activity groups varied in party …

Largemouth Bass In The Upper Mississippi River: An Evaluation Of Management Strategies And Understanding Potential Factors Influencing Dynamic Rate Functions, Kylie Beth Sterling

Graduate Theses/Dissertations

The Upper Mississippi River (UMR) supports ecologically and economically important commercial and recreational fisheries. One recreational fishery in the UMR is the Largemouth Bass fishery. Recreational fisheries can be effectively managed using information on population dynamics, though little is known about Largemouth Bass population dynamics in large river ecosystems. Therefore, the objectives of this study were to 1) evaluate recruitment, growth, and mortality of three Largemouth Bass populations in the UMR, specifically within Pools 4, 8, and 13, and 2) to use those estimates of recruitment, growth and mortality to inform exploitation models to evaluate best management practices for each …

Zebra Mussel Length-Weight Relationships Across Various Substrate Types In Lake Bemidji, Mitch Kehne

Journal of Earth and Life Science

As of November 2021, zebra mussels were confirmed in 270 Minnesotan lakes with another 232 lakes listed as infested due to their connection or proximity to where zebra mussels have been found. With lack of effective treatments to impede their spread, zebra mussels continue to colonize new areas causing ecological as well as economic harm. The goal of this study was to establish a length-weight relationship for the zebra mussel population in Lake Bemidji using shell length (SL) and wet weight (WW), as well as to assess substrate type and log transformed shell length as predictors of log transformed zebra …

Implications Of Condition Shifts On Shallow Lakes, Alicia Skolte

Biology Graduate Theses

Shallow lakes have undergone condition shifts throughout time by natural causes, management actions, or a combination of the two. Because shallow lakes are especially vulnerable to shifts towards turbid conditions, management actions on shallow lakes have focused on water level/retainment, biomanipulations, the management/removal of non-native species, and land-use changes. This review compiles a summary on ecosystem shifts including a discussion on the frequency of shifts historically and the importance and causes of those shifts, trophic cascades, and the influence of introduced species in shallow lakes. This review will then examine case-studies of management-linked shifts and explain current shift theory. Next, …

The U.S. Inland Creel And Angler Survey Catalog (Creelcat): Development, Applications, And Opportunities, Abigail J. Lynch, Nicholas A. Sievert, Holly S. Embke, Ashley M. Robertson, Bonnie J.E. Myers, Micheal S. Allen, Zachary S. Feiner, Frederick Hoogakker, Scott Knoche, Rebecca M. Krogman, Stephen R. Midway, Chelsey L. Nieman, Craig P. Paukert, Kevin L. Pope, Mark W. Rogers, Lyndsie S. Wszola, T. Douglas Beard

Nebraska Cooperative Fish and Wildlife Research Unit: Staff Publications

Inland recreational fishing, defined as primarily leisure-driven fishing in freshwaters, is a popular pastime in the USA. State natural resource agencies endeavor to provide high-quality and sustainable fishing opportunities for anglers. Managers often use creel and other angler survey data to inform state- and waterbody-level management efforts. Despite the broad implementation of angler surveys and their importance to fisheries management at state scales, regional and national coordination among these activities is minimal, limiting data applicability for larger-scale management practices and research. Here, we introduce the U.S. Inland Creel and Angler Survey Catalog (CreelCat), a first-of-its-kind, publicly available national database of …

Temporal Invariance Of Social-Ecological Catchments, Mark A. Kaemingk, Christine N. Bender, Chris Chizinski, Aaron J. Bunch, Kevin L. Pope

Nebraska Cooperative Fish and Wildlife Research Unit: Staff Publications

Natural resources such as waterbodies, public parks, and wildlife refuges attract people from varying distances on the landscape, creating “social-ecological catchments.” Catchments have provided great utility for understanding physical and social relationships within specific disciplines. Yet, catchments are rarely used across disciplines, such as its application to understand complex spatiotemporal dynamics between mobile human users and patchily distributed natural resources. We collected residence ZIP codes from 19,983 angler parties during 2014–2017 to construct seven angler–waterbody catchments in Nebraska, USA. We predicted that sizes of dense (10% utilization distribution) and dispersed (95% utilization distribution) angler–waterbody catchments would change across seasons and …

Roost Use And Movements Of Northern Long-Eared Bats In A Southeast Nebraska Agricultural Landscape, Christopher Fill, Craig R. Allen, John F. Benson, Dirac Twidwell

Nebraska Cooperative Fish and Wildlife Research Unit: Staff Publications

Bats are important bio-indicators of ecosystem health and provide a number of ecosystem services. White-nose Syndrome and habitat loss have led to the decline of many bat species in eastern North America, including the federally threatened northern long-eared bat, Myotis septentrionalis. White-nose Syndrome was only recently found in Nebraska, which lies on the western extent of this species geographic range. To better understand how this forest-dependent species persists in an agriculturally dominated landscape amid a growing number of pressures, we investigated the roosting habits of this bat at the Homestead National Monument of America, located in southeast Nebraska. We …

Phylogenomics Reveals Ancient And Contemporary Gene Flow Contributing To The Evolutionary History Of Sea Ducks (Tribe Mergini), Philip Lavretsky, Robert E. Wilson, Sandra L. Talbot, Sarah A. Sonsthagen

Nebraska Cooperative Fish and Wildlife Research Unit: Staff Publications

Insight into complex evolutionary histories continues to build through broad comparative phylogenomic and population genomic studies. In particular, there is a need to understand the extent and scale that gene flow contributes to standing genomic diversity and the role introgression has played in evolutionary processes such as hybrid speciation. Here, we investigate the evolutionary history of the Mergini tribe (sea ducks) by coupling multi-species comparisons with phylogenomic analyses of thousands of nuclear ddRAD-seq loci, including Z-sex chromosome and autosomal linked loci, and the mitogenome assayed across all extant sea duck species in North America. All sea duck species are strongly …

Effects Of Salt Runoff On Aquatic Macroinvertebrate Colonies, Kendra Fink

Journal of Earth and Life Science

Aquatic macroinvertebrates bridge the gap in part between primary and secondary consumers, making them ecologically important for most aquatic systems. They are used as biotic indicators for water quality due to their sensitivity to pollutants and may be affected, specifically, by chloride ion concentrations in the water. Water quality can be evaluated by looking at species compositions and their respective tolerance values. To determine long-term effects of road salt on macroinvertebrate colonies, a total of 338 identified macroinvertebrates of 10 families (two generalized to class) at 9 sites were collected from before, after, and between three bridges on Turtle River …

Impacts Of Extreme Environmental Disturbances On Piping Plover Survival Are Partially Moderated By Migratory Connectivity, Kristen S. Ellis, Michael J. Anteau, Francesca J. Cuthbert, Cheri L. Gratto-Trevor, Joel G. Jorgensen, David J. Newstead, Larkin Powell, Megan M. Ring, Mark H. Sherfy, Rose J. Swift, Dustin L. Toy, David N. Koons

Nebraska Cooperative Fish and Wildlife Research Unit: Staff Publications

Effective conservation for listed migratory species requires an understanding of how drivers of population decline vary spatially and temporally, as well as knowledge of range-wide connectivity between breeding and nonbreeding areas. Environmental conditions distant from breeding areas can have lasting effects on the demography of migratory species, yet these consequences are often the least understood. Our objectives were to 1) evaluate associations between survival and extreme environmental disturbances at nonbreeding areas, including hurricanes, harmful algal blooms, and oil spills, and 2) estimate migratory connectivity between breeding and nonbreeding areas of midcontinental piping plovers (Charadrius melodus). We used capture …

Factors Influencing Aquatic Invertebrate Diversity In Mine Pit Lakes Along The Mesabi Iron Range, Jeremy Laurich

Journal of Earth and Life Science

Restoration of mine pit lakes for recreation is going to be very important for the future of Minnesota’s Mesabi Iron Range area. As many as 250 lakes will need to be restored in the future along this 100-kilometer-long swath of mining country. Information regarding the organisms that currently inhabit these lakes is important for future restorations to be a success. The focus of this study was to identify the types of aquatic invertebrates present in pit lakes and to identify some of the factors that influence their abundance and diversity. During this study, invertebrate samples were taken along the shore …