Aquaculture and Fisheries Commons^™

Contrasting Environmental Drivers Of Adult And Juvenile Growth In A Marine Fish: Implications For The Effects Of Climate Change, Joyce Jia Lin Ong, Adam Nicholas Rountrey, Jessica Jane Meeuwig, Stephen J. Newman, Jens Zinke, Mark Gregory Meekan

Fisheries Research Articles

Many marine fishes have life history strategies that involve ontogenetic changes in the use of coastal habitats. Such ontogenetic shifts may place these species at particular risk from climate change, because the successive environments they inhabit can differ in the type, frequency and severity of changes related to global warming. We used a dendrochronology approach to examine the physical and biological drivers of growth of adult and juvenile mangrove jack (Lutjanus argentimaculatus) from tropical north-western Australia. Juveniles of this species inhabit estuarine environments and adults reside on coastal reefs. The Niño-4 index, a measure of the status of …

Growth Of A Deep-Water, Predatory Fish Is Influenced By The Productivity Of A Boundary Current System, Hoang Minh Nguyen, Adam N. Rountrey, Jessica J. Meeuwig, Peter G. Coulson, Ming Feng, Stephen J. Newman, Anya M. Waite, Corey B. Wakefield, Mark G. Meekan

Fisheries Research Articles

The effects of climate change on predatory fishes in deep shelf areas are difficult to predict because complex processes may govern food availability and temperature at depth. We characterised the net impact of recent environmental changes on hapuku (Polyprion oxygeneios), an apex predator found in continental slope habitats (>200 m depth) by using dendrochronology techniques to develop a multi-decadal record of growth from otoliths. Fish were sampled off temperate south-western Australia, a region strongly influenced by the Leeuwin Current, a poleward-flowing, eastern boundary current. The common variance among individual growth records was relatively low (3.4%), but the …

The Value Of Captains’ Behavioral Choices In The Success Of The Surfclam (Spisula Solidissima) Fishery On The U.S. Mid-Atlantic Coast: A Model Evaluation, Eric N. Powell, John M. Klinck, Daphne M. Munroe, Eileen E. Hofmann, Paula Moreno, Roger Mann

CCPO Publications

The response of the surfclam Spisula solidissima to warming of the Mid-Atlantic Bight is manifested by recession of the southern and inshore boundary of the clam’s range. This phenomenon has impacted the fishery through the closure of southern ports and the movement of processing capacity north, impacts that may require responsive actions on the part of fishery captains to mitigate a decline in fishery performance otherwise ineluctably accompanying this shift in range. The purpose of this study was to evaluate options in the behavioral repertoire of captains that might provide mitigation. A model capable of simulating a spatially and temporally …

The Effect Of Parental Size On Spermatophore Production, Egg Quality, Fertilization Success, And Larval Characteristics In The Caribbean Spiny Lobster, Panulirus Argus, Mark J. Butler Iv, Alison Macdiarmid, Gaya Gnanalingam

Biological Sciences Faculty Publications

The average size of spiny lobsters (Decapoda; Palinuridae) has decreased worldwide over the past few decades. Market forces coupled with minimum size limits compel fishers to target the largest individuals. Males are targeted disproportionately as a consequence of sexual dimorphism in spiny lobster size (i.e. males grow larger than females) and because of protections for ovigerous females. Therefore, overexploitation of males has led to sperm limitation in several decapod populations with serious repercussions for reproductive success. In the Caribbean spiny lobster, Panulirus argus, little is known about the effect of reduced male size on fertilization success or the role …

River Report. State Of The Lower St. Johns River Basin, Florida: Water Quality, Fisheries, Aquatic Life, Contaminants, 2015, Environmental Protection Board, City Of Jacksonville, University Of North Florida, Jacksonville University, Lucy Sonnenberg, Gerry Pinto, Nisse Goldberg, Anthony Ouellette, Gretchen Bielmyer-Fraser, Stuart J. Chalk, Peter Bacopoulos, Brian P. Zoellner

State of the River Report

No abstract provided.

Casitas: A Location-Dependent Ecological Trap For Juvenile Caribbean Spiny Lobsters, Panulirus Argus, Benjamin C. Gutzler, Mark J. Butler Iv, Donald C. Behringer

Biological Sciences Faculty Publications

Casitas are artificial shelters used by fishers to aggregate Caribbean spiny lobsters (Panulirus argus) for ease of capture. However, casitas may function as an ecological trap for juvenile lobsters if they are attracted to casitas and their growth or mortality is poorer compared with natural shelters. We hypothesized that juvenile lobsters may be at particular risk if attracted to casitas because they are less able than larger individuals to defend themselves, and do not forage far from shelter. We compared the nutritional condition, relative mortality, and activity of lobsters of various sizes in casitas and natural shelters in adult and …

Navigating A Pathway Toward Colorado's Water Future: A Review And Recommendations On Colorado's Draft Water Plan, Lawrence J. Macdonnell, Colorado Water Working Group

Books, Reports, and Studies

40 pages (includes color illustrations).

Use Of A Towed Camera System For Estimating Reef Fish Populations Densities On The West Florida Shelf, Sarah Elizabeth Grasty

USF Tampa Graduate Theses and Dissertations

Reef fish species tend to reside over high relief habitat which makes them difficult to sample with traditional gears such as nets and trawls. Therefore, implementing and understanding the strengths and weaknesses of new approaches which incorporate acoustic and optical methods has become a priority for reef fish stock assessment. Beginning in June of 2013, a towed camera system known as the Camera-Based Assessment Survey System (C-BASS) has been used to visualize over 500 kilometers of transect and record more than 80 hours of video over several habitats in the Gulf of Mexico. Surveys have been completed on the West …

Harvest Incentives: A Tool For Managing Aquatic Invasive Species, Bob Wiltshire, Nathan Stone, Marshall Meyers, Bill Hyatt, Lori Williams, Jason Goldberg, Susan Pasko, Leah Elwell

National Invasive Species Council

Conclusion

The success of any harvest incentive program to address aquatic invasive species will depend upon numerous biological, socioeconomic, and legal considerations. Programs that encourage harvest may be a successful management tool in targeting small, distinct populations; in high priority areas within a larger invasion; or they may play a supplementary role within larger control programs. Their use, however, will require careful review, planning, and monitoring to ensure success and that they do not unintentionally lead to further spread of invasive species, cause additional harm to native species, or waste valuable resources.

The Effects That Liquid And Solid Cattle Manure Have On The Water Quality Of Drainage Ditches In Putnam County, Ohio, Janelle Horstman

Honors Projects

Lake Erie has experienced harmful algal blooms with increased frequency since the mid-1990s due to excess nutrients from Rivers, such as the Maumee River, and largely agricultural watersheds. Nonpoint source pollution from agriculture contributes to eutrophication, algal blooms, and the degradation of water quality. This creates stress on aquatic fauna, reduced aesthetic quality, odor, and limits of the water for usage of drinking, recreation, and industry. This research paper asks what the contributions of having access to manure application records, soil records, and information about antibiotics have on what is known about manure management and antibiotic resistance, which has been …

State Of The River Report For The Lower St. Johns River Basin, Florida: Water Quality, Fisheries, Aquatic Life, And Contaminants 2014, Environmental Protection Board, City Of Jacksonville, University Of North Florida, Jacksonville University, Lucy Sonnenberg, Gerry Pinto, Nisse Goldberg, Kimberly Mann, Radha Pyati, Gretchen Bielmyer-Fraser, Stuart Chalk, Peter Bacopoulos, Brian P. Zoellner

State of the River Report

No abstract provided.

The Impact Of Multiple Nursery Areas On The Population Structure Of Atlantic Menhaden, Brevooria Tyrannus, Kristen A. Anstead

OES Theses and Dissertations

Understanding the population structure and patterns of connectivity in marine fishes is essential when making predictions about a species' resiliency and persistence in an increasingly changing environment. The Atlantic Menhaden Brevoortia tyrannus is a clupeid that plays a critical role in the marine food web and supports one of the largest fisheries on the US East Coast. In addition to a decrease in overall numbers and spawning stock biomass, recruitment levels have remained low since the 1990s. Menhaden use numerous estuaries along the Atlantic coast for juvenile development before recruiting to the adult population and the contribution of each of …

Effects Of Predation Upon The Long-Spined Sea Urchin Diadema Antillarum By The Spotted Spiny Lobster Panulirus Guttatus, Meredith D. Kintzing, Mark J. Butler Iv

Biological Sciences Faculty Publications

Sea urchins, important herbivores in marine ecosystems, are strongly impacted by both the direct and indirect effects of predation, and the long-spined sea urchin Diadema antillarum is no exception. Once abundant on Caribbean coral reefs, D. antillarum populations were decimated by disease in the early 1980s, and only where their natural predators have been over-fished has D. antillarum recovery been observed. Spiny lobsters (Palinuridae) are predators of sea urchins, and although there are several species of spiny lobster in the Caribbean, only the spotted spiny lobster Panulirus guttatus is restricted to coral reefs where D. antillarum dwells. We investigated the …

Reproductive Phase Determination In Male Meagre (Argyrosomus Regius, Sciaenidae): Testis Development And Histologic Corroboration Of A Gross Anatomical Scale, Nuno Prista, Leonel Gordo, José Lino Costa, Maria José Costa, Cynthia Jones

OES Faculty Publications

Reproductive stage determination of male gonads has received sparse attention in fish biology literature with few studies detailing the building of gross anatomical- and histologic scales. The meagre (Argyrosomus regius) is one of the world's largest sciaenids and supports a significant regional fishery in European and North African waters whose reproductive patterns are yet to be fully investigated. In the present study, we derive a macroscopic grading system for meagre testis using semi-quantitative graphs that feature the testis variability along the species size range and time of the year. We then describe the histological stages and reproductive phases of male …

Ccaat/Enhancer-Binding Protein Delta (C/Ebp-Delta) Expression In Antarctic Fishes: Implications For Cell Cycle And Apoptosis, Isaac Martin Sleadd

Dissertations and Theses

Chapter 1: Antarctic fishes are extremely cold adapted. Despite their inability to upregulate heat shock proteins, recent studies have demonstrated a capacity for heat response in these animals. A cDNA microarray study looked at the Notothenioid fish Trematomus bernacchii and revealed heat sensitivities for hundreds of genes, two of which code for members of the CCAAT/Enhancer-binding protein (C/EBP) family of transcription factors. These molecular switches are best known for their roles in apoptosis, inflammation and cell cycle arrest. This dissertation further elucidates the role of C/EBP-delta in the Antarctic fishes T. bernacchii and Pagothenia borchgrevinki.

Chapter 2: C/EBP-delta is constitutively …

Fish Species Distribution In Seagrass Habitats Of Chesapeake Bay Are Structured By Abiotic And Biotic Factors, Jason J. Schaffler, Jacques Van Montfrans, Cynthia M. Jones, Robert J. Orth

OES Faculty Publications

Seagrass habitats have long been known to serve as nursery habitats for juvenile fish by providing refuges from predation and areas of high forage abundance. However, comparatively less is known about other factors structuring fish communities that make extensive use of seagrass as nursery habitat. We examined both physical and biological factors that may structure the juvenile seagrass-associated fish communities across a synoptic-scale multiyear study in lower Chesapeake Bay. Across 3years of sampling, we collected 21,153 fish from 31 species. Silver Perch Bairdiella chrysoura made up over 86% of all individuals collected. Nine additional species made up at least 1% …

Colorado River Cutthroat Trout Habitat Resistance And Resilience To Climate Change, Kate H. Olsen

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Government agencies and private organizations spend large amounts of public money attempting to return ecosystems to a more natural state, which have often been harmed or even destroyed as a result of modern development. Colorado River cutthroat trout, Oncorhyncus clarki pleuriticus, are a subspecies of cutthroat trout. Cutthroat trout live in the Rocky Mountains of the western United States. The population of this particular subspecies has been severely reduced by human actions, and currently only 12% of its historic populations still exist. To improve the condition of cutthroat trout, fisheries professionals and biologists are working to restore natural populations. …

Assessment Of A Rotenone Application Event At Mormon Island West Lake In Central Nebraska, Keith D. Koupal, Brian C. Peterson, Casey W. Schoenebeck

Transactions of the Nebraska Academy of Sciences and Affiliated Societies

Fisheries managers applied rotenone to Mormon Island West in August of 2010 to renovate a fish community that was hypothesized to be unbalanced (i.e., dominated with gizzard shad and common carp) based on standardized survey results. We estimated species-specific biomass following the lake renovation to provide a baseline biomass estimate for a sand pit lake and to evaluate the effectiveness of standardized sampling gears. Gizzard shad (Dorosoma cepedianum) were abundant in all sampling gears, but mostly stock-size (>175 mm total length) and larger individuals were caught in gill and trap nets and sub-stock (≤175 mm total length) …

State Of The River Report For The Lower St. Johns River Basin, Florida: Water Quality, Fisheries, Aquatic Life, And Contaminants 2013, Environmental Protection Board, City Of Jacksonville, University Of North Florida, Jacksonville University

State of the River Report

No abstract provided.

Effect Of Laser Ablation Depth In Otolith Life History Scans, Renée R. Hoover, Cynthia M. Jones

OES Faculty Publications

Life history scans of fish otoliths are bringing new insight into the structure, connectivity, and movement of fish populations. Data obtained from such scans, however, possess in-herent limitations that have not yet been fully addressed or understood. For example, several investigators have noted delays in otolith elemental uptake that do not appear to reflect habitat exposure. We hypothesized that the 3-dimensional structure of otoliths may produce sampling artifacts in the results obtained from laser ablation scans. To test this hypothesis, we sampled sagittal otoliths from juvenile Atlantic croaker Micropogonias undulatus with laser ablation inductively coupled plasma mass spectrometry to obtain …

Nantucket Shellfish Management Plan, Matthew Herr, Frank Dutra, Tara Riley, Sarah Oktay, Peter Boyce, Doug Smith, Carl Sjolund, Jake Kritzer, Cormac Collier, Dave Fronzuto, Kristin Uiterwyk, Jack Wiggin, Dale Leavitt, Steve Bliven, Allison Novelly, Dan Hellin

Urban Harbors Institute Publications

Nantucket’s shellfisheries are significant both locally and nationally. Locally, commercial and recreational shellfishing are critical to the Island’s history, culture, and economy. Nationally, the Island’s largest commercial shellfishery — the Nantucket bay scallop fishery is one of the last wild-harvest bay scallop fisheries in the country, but there is growing concern over the health of the overall population and the sustainability of the fishery. Given the importance of the shellfisheries on Nantucket and the drastic decline of bay scallop populations elsewhere along the Atlantic coast, there is a compelling interest in ensuring that the Town’s shellfish are managed to sustain …

Bait Effects In Sampling Coral Reef Fish Assemblages With Stereo-Bruvs, Stacey R. Dorman, Euan S. Harvey, Stephen J. Newman

Fisheries Research Articles

Baited underwater video techniques are increasingly being utilised for assessing and monitoring demersal fishes because they are: 1) non extractive, 2) can be used to sample across multiple habitats and depths, 3) are cost effective, 4) sample a broader range of species than many other techniques, 5) and with greater statistical power. However, an examination of the literature demonstrates that a range of different bait types are being used. The use of different types of bait can create an additional source of variability in sampling programs. Coral reef fish assemblages at the Houtman Abrolhos Islands, Western Australia, were sampled using …

A Study Of The Spawning Ecology And Early Life History Survival Of Bonneville Cutthroat Trout, Phaedra E. Budy, Sarah Wood, Brett B. Roper

Watershed Sciences Faculty Publications

We completed a large-scale field experiment in four tributaries of the Logan River, Utah, where the largest metapopulation of imperiled Bonneville cutthroat trout Oncorhynchus clarkii utah persists. We documented the spatial and temporal distributions of spawners, quantified substrate use versus substrate availability, and evaluated differences in hatch and emergence fry success between and among sites in relation to habitat characteristics. We observed considerable variability in the timing, magnitude, and duration of spawning among study areas (streams), in part as a function of a variable, multipeaked hydrograph. Nevertheless, across study areas, >70% of redds were constructed on the final descending limb …

Nantucket Shellfish Management Plan, Kristin Uiterwyk, Steve Bliven, Dan Leavitt, Jack Wiggin, Urban Harbors Institute, University Of Massachusetts Boston

Office of Community Partnerships Posters

Nantucket’s shellfish resources are an important part of the Island’s history, culture, and economy. Nantucket waters support one of the country’s last wild-caught bay scallop fisheries. Elsewhere along the Atlantic coast, fishing pressure, habitat loss, and disease have severely depleted bay scallop populations. Although Nantucketers continue to make a living harvesting shellfish from the Island’s waters, many do so with concern for the future of the resources and the habitats that support them. Urban Harbors Institute (UHI) provided technical assistance to the community to develop a Shellfish Management Plan (SMP) that addresses issues of water quality, habitat loss, climate change, …

Does Large-Scale Ocean Circulation Structure Life History Connectivity In Antarctic Toothfish (Dissostichus Mawsoni)?, Julian Ashford, Michael S. Dinniman, Cassandra Brooks, Allen H. Andrews, Eileen E. Hofmann, Gregor Cailliet, Christopher Jones, Nakul Ramanna

CCPO Publications

A multidisciplinary approach incorporating otolith chemistry, age data, and numerical Lagrangian particle simulations indicated a single, self-recruiting population of Antarctic toothfish (Dissostichus mawsoni) in the Southeast Pacific Basin (SPB) and Ross Sea, with a life history structured by the large-scale circulation. Chemistry deposited prior to capture along otolith edges demonstrated strong environmental heterogeneity, yet the chemistry in otolith nuclei, deposited during early life, showed no differences. Age data showed only adult fish in catches on the Pacific-Antarctic Ridge in the SPB and structuring of life stages consistent with transport pathways from the northern Ross Sea. Lagrangian particle simulations …

The Rise And Fall Of Crassostrea Virginica Oyster Reefs: The Role Of Disease And Fishing In Their Demise And A Vignette On Their Management, Eric N. Powell, John M. Klinck, Kathryn Ashton-Alcox, Eileen E. Hofmann, Jason Morson

CCPO Publications

We describe a model designed to simulate the shell carbonate budget of an oyster reef.We identify five parameters descriptive of basic characteristics of the shell carbonate budget of a reef that limit simulation accuracy. Two describe the TAZ (taphonomically-active zone) and the distribution of shell carbonate within it. One is the taphonomic rate in the TAZ. Two determine the volume contribution of shell carbonate and the taphonomic loss rate within the reef framework. For Mid-Atlantic estuaries, model simulations suggest that reef accretion only occurs if oyster abundance is near carrying capacity. Simulations further suggest that reef accretion is infeasible for …

State Of The River Report For The Lower St. Johns River Basin, Florida: Water Quality, Fisheries, Aquatic Life, And Contaminants 2012, Environmental Protection Board, City Of Jacksonville, University Of North Florida, Jacksonville University

State of the River Report

No abstract provided.

Environmental Influences On Juvenile Fish Abundances In A River-Dominated Coastal System, Laure Carassou, Brian Dzwonkowski, Frank J. Hernandez, Jr., Sean P. Powers, William M. Graham, Kyeong Park, John Mareska

University Faculty and Staff Publications

We investigated the influence of climatic and environmental factors on variations in juvenile abundances of marine fishes in a river-dominated coastal system of the north-central Gulf of Mexico, where an elevated primary productivity sustains fisheries of high economic importance. Fish were collected monthly with an otter trawl at three stations near Mobile Bay from 1982 to 2007. Fish sizes were used to isolate juvenile stages within the data set, and monthly patterns in juvenile fish abundance and size were then used to identify seasonal peaks for each species. The average numbers of juvenile fish collected during these seasonal peaks in …

Rumbling In The Benthos: Acoustic Ecology Of The California Mantis Shrimp Hemisquilla Californiensis, E. Staaterman, C. Clark, A. Gallagher, M. Devries, T. Claverie, S. Patek

Faculty Publications, Biological Sciences

Although much research has focused on acoustic mapping and exploration of the benthic environment, little is known about the acoustic ecology of benthic organisms, particularly benthic crustaceans. Through the use of a coupled audio–video system, a hydrophone array, and an autonomous recording unit, we tested several hypotheses about the field acoustics of a benthic marine crustacean, Hemisquilla califor­niensis. Living in muddy burrows in southern California, these large mantis shrimp produce low frequency ‘rumbles’ through muscle vibrations. First, we tested whether acoustic signals are similar in the field and in the laboratory, and discovered that field-produced rumbles are more acoustically and …

Mercury In The Pelagic And Benthic Food Webs Of The Great Salt Lake, Wayne A. Wurtsbaugh, Erin Fleming, Caleb Izdepski, Jodi Gardberg

Watershed Sciences Faculty Publications

No abstract provided.