Aquaculture and Fisheries Commons^™

Climate-Driven Impacts On Himalayan Aquatic Biodiversity: A Case Study Involving Snowtrout (Cyprinidae: Schizothorax), Riri Wiyanti Retnaningtyas

Graduate Theses and Dissertations

Monitoring biodiversity, to include its relative dispersal and contraction, has become a conservation task of great importance, particularly given the catastrophic and ongoing loss of habitat due to climate change. However, the timing, direction, and magnitude of these rates vary across taxa and ecosystems. Predicting specific impacts of climate change can thus be difficult and this, in turn, hampers management action. Metrics are needed to not only quantify contemporary requirements of species, but also predict potential distributions that fluctuate in lockstep with climate.

Montane ecosystems in the Himalayas are highly impacted by climate change, yet remain largely understudied due to …

Resource Assessment Report Abrolhos Islands And Mid-West Trawl Managed Fishery Resource, Mervi Kangas, A Chandrapavan, Anne Wilkins, E. A. Fisher, S. Evans

WA Marine Stewardship Council report series

This document provides a cumulative description and assessment of the Abrolhos Islands and Mid-West Trawl Managed Fishery (AIMWTMF) and all of the fishing activities (i.e. fisheries / fishing sectors) affecting this resource in Western Australia (WA). This resource comprises of a single species of scallop, Ylistrum balloti which occurs in inshore waters to around 40 m depth at the Abrolhos Islands. This species is captured exclusively by demersal otter trawl gear in the West Coast Bioregion.

Temporal Invariance Of Social-Ecological Catchments, Mark A. Kaemingk, Christine N. Bender, Chris Chizinski, Aaron J. Bunch, Kevin L. Pope

Nebraska Cooperative Fish and Wildlife Research Unit: Staff Publications

Natural resources such as waterbodies, public parks, and wildlife refuges attract people from varying distances on the landscape, creating “social-ecological catchments.” Catchments have provided great utility for understanding physical and social relationships within specific disciplines. Yet, catchments are rarely used across disciplines, such as its application to understand complex spatiotemporal dynamics between mobile human users and patchily distributed natural resources. We collected residence ZIP codes from 19,983 angler parties during 2014–2017 to construct seven angler–waterbody catchments in Nebraska, USA. We predicted that sizes of dense (10% utilization distribution) and dispersed (95% utilization distribution) angler–waterbody catchments would change across seasons and …

Roost Use And Movements Of Northern Long-Eared Bats In A Southeast Nebraska Agricultural Landscape, Christopher Fill, Craig R. Allen, John F. Benson, Dirac Twidwell

Nebraska Cooperative Fish and Wildlife Research Unit: Staff Publications

Bats are important bio-indicators of ecosystem health and provide a number of ecosystem services. White-nose Syndrome and habitat loss have led to the decline of many bat species in eastern North America, including the federally threatened northern long-eared bat, Myotis septentrionalis. White-nose Syndrome was only recently found in Nebraska, which lies on the western extent of this species geographic range. To better understand how this forest-dependent species persists in an agriculturally dominated landscape amid a growing number of pressures, we investigated the roosting habits of this bat at the Homestead National Monument of America, located in southeast Nebraska. We …

Phylogenomics Reveals Ancient And Contemporary Gene Flow Contributing To The Evolutionary History Of Sea Ducks (Tribe Mergini), Philip Lavretsky, Robert E. Wilson, Sandra L. Talbot, Sarah A. Sonsthagen

Nebraska Cooperative Fish and Wildlife Research Unit: Staff Publications

Insight into complex evolutionary histories continues to build through broad comparative phylogenomic and population genomic studies. In particular, there is a need to understand the extent and scale that gene flow contributes to standing genomic diversity and the role introgression has played in evolutionary processes such as hybrid speciation. Here, we investigate the evolutionary history of the Mergini tribe (sea ducks) by coupling multi-species comparisons with phylogenomic analyses of thousands of nuclear ddRAD-seq loci, including Z-sex chromosome and autosomal linked loci, and the mitogenome assayed across all extant sea duck species in North America. All sea duck species are strongly …

Impacts Of Extreme Environmental Disturbances On Piping Plover Survival Are Partially Moderated By Migratory Connectivity, Kristen S. Ellis, Michael J. Anteau, Francesca J. Cuthbert, Cheri L. Gratto-Trevor, Joel G. Jorgensen, David J. Newstead, Larkin Powell, Megan M. Ring, Mark H. Sherfy, Rose J. Swift, Dustin L. Toy, David N. Koons

Nebraska Cooperative Fish and Wildlife Research Unit: Staff Publications

Effective conservation for listed migratory species requires an understanding of how drivers of population decline vary spatially and temporally, as well as knowledge of range-wide connectivity between breeding and nonbreeding areas. Environmental conditions distant from breeding areas can have lasting effects on the demography of migratory species, yet these consequences are often the least understood. Our objectives were to 1) evaluate associations between survival and extreme environmental disturbances at nonbreeding areas, including hurricanes, harmful algal blooms, and oil spills, and 2) estimate migratory connectivity between breeding and nonbreeding areas of midcontinental piping plovers (Charadrius melodus). We used capture …

Effects Of Large Wood Restoration On Coho Salmon In A Northern California Watershed: A Before-After-Control-Impact Experiment, Natalie B. Okun

Cal Poly Humboldt theses and projects

Substantial time, money, and effort are invested in river and stream restoration projects to aid in the recovery of imperiled salmonid populations, but there is little evidence that these efforts have had lasting positive impacts on juvenile fish growth and survival. To assess the effectiveness of large woody debris (LWD) restoration, which is one of the most common restoration practices, I evaluated the growth and survival response of endangered Central California Coast coho salmon (Oncorhynchus kisutch) in a paired watershed before-after impact-control (BACI) study. To determine if LWD supplementation influenced coho salmon growth and survival, two neighboring, similar …

Factors Influencing Aquatic Invertebrate Diversity In Mine Pit Lakes Along The Mesabi Iron Range, Jeremy Laurich

Journal of Earth and Life Science

Restoration of mine pit lakes for recreation is going to be very important for the future of Minnesota’s Mesabi Iron Range area. As many as 250 lakes will need to be restored in the future along this 100-kilometer-long swath of mining country. Information regarding the organisms that currently inhabit these lakes is important for future restorations to be a success. The focus of this study was to identify the types of aquatic invertebrates present in pit lakes and to identify some of the factors that influence their abundance and diversity. During this study, invertebrate samples were taken along the shore …

Soil Response Of Helicopter Liming In The Monongahela National Forest, Jarrett Douglas Fowler

Graduate Theses, Dissertations, and Problem Reports (ETD)

Soils in the Monongahela National Forest (MNF) are acidic due to sandstone parent material, acid deposition, uptake of base cations by vegetation, and release of organic acids by organic matter (OM) decomposition. Increases in soil acidity have caused declines in forest health and changed species composition and nutrient status. Liming can neutralize soil acidity, but no large-scale liming projects have been done on acid forest soils in the USA. In anticipation of acquiring funding for a proposed liming project in the MNF, in 2007 and 2009 10 sites were selected to sample and analyze soils before lime was applied. In …

Potential Solar Replacement Of Hydroelectricity To Reopen Rivers: Maine As A Case Example, Shailesh Sharma, John Waldman

Publications and Research

Hydroelectricity provides 6% of U.S. electrical power needs, but hydro-dams also cause environmental harm, including the retardation or complete blockage of spawning runs of anadromous fishes. To facilitate fish movements, engineered-fishways have long been used but many have performed poorly. Dam-removal is the most effective way of restoring dwindling migratory fish populations by allowing unrestricted pathways to their spawning areas and for the downstream migrations of post-spawning adults and juveniles. However, removals of hydro-dams result in a loss of electricity production. For the replacement of energy foregone from hydro-dam removals, various alternative energy installations are now feasible. We present one-to-one …

First Record Of Blacknape Large-Eye Bream Gymnocranius Satoi (Perciformes: Lethrinidae) In The Philippines, Nicko Amor Flores, Jade Tifany Rey, Jeffrey T. Williams, Kent Carpenter, Mudjekeewis Santos

Biological Sciences Faculty Publications

The Philippines has been regarded as the center of the center of marine shorefish biodiversity, having the highest number of fish species per square area in the world. The blacknape large-eye bream, Gymnocranius satoi, has been reported to occur from Southern Japan, Taiwan to Northwestern Australia and to the Coral Sea, but has not previously been recorded from the Philippines. From 2011 – 2019, the National Fisheries Research and Development Institute (NFRDI) collaborated with the National Museum of Natural History of the Smithsonian Institution (NMNH/SI), USA, and the Old Dominion University (ODU), Virgina, USA, to inventory all commercial fish …

Infaunal Bivalve Density And Richness In North Inlet Estuary, South Carolina: Seasonal Patterns And Ecological Factors, Valerie M. Knowles, Juliana Harding

Honors Theses

Estuarine bivalves recruit to benthic habitats after the larvae are in the planktonic stage. The observed infaunal bivalve density relates to larval supply from adult reproduction during warmer months as well as larval and juvenile mortality post-recruitment. The purpose of this research was to examine annual and seasonal patterns of infaunal bivalve density and richness in the context of habitat water temperature and salinity. Cores were collected biweekly from Bly Creek in North Inlet estuary between January 2019 and February 2020. Temperatures ranged from 9-30 ºC and salinity ranged from ~17-36 psu. Bivalves were sieved out of the cores, counted, …

An Open-Sourced, Web-Based Application To Improve Our Ability To Understand Hunter And Angler Purchasing Behavior From License Data, Nathaniel B. Price, Christopher J. Chizinski, Joseph J. Fontaine, Kevin L. Pope, Micaela Rahe, Jeff Rawlinson

Nebraska Cooperative Fish and Wildlife Research Unit: Staff Publications

State fish and wildlife agencies rely on hunters and anglers (i.e., sportspersons) to fund management actions through revenue generated from license sales and excise taxes on hunting and fishing equipment. There is a need to develop new techniques that bridge the information gap on participation and provide agencies with an understanding of sportspersons at a resolution that can more directly inform efforts to engage sportspersons. Monitoring sportsperson participation using information about their license-purchasing behavior has the potential to reveal important patterns in recruitment (first-time purchase of a hunting or fishing license), retention (continued purchase of licenses across multiple years), and …

Interests And Priorities In Sockeye Salmon Management: How Are Policies Enacted And Interpreted On Three Alaskan Rivers?, Jake P. Palazzi

University Honors Theses

The large export abundance of Alaskan salmon is well documented, and many studies have been performed to assess the economic and environmental viability of the industry and its management. Less research has been done to characterize how state intentions regarding fisheries allocation are conceived of by management or perceived by vulnerable groups in the user pool. This study seeks to qualitatively characterize the disconnect between state and Native Alaskan perceptions of management effectiveness, public interest, and Native Alaskan involvement using interviews. Results showed that Native Alaskan and state manager respondents had very different perceptions of management effectiveness and equity. When …

Development Of Methods To Track Oyster Movement Under Field Conditions In North Inlet Estuary, South Carolina, Alyssa M. Leclaire

Honors Theses

Eastern oyster (Crassostrea virginica) reefs provide important habitat structure and ecosystem services in saltmarsh tidal creek estuaries. Reef persistence depends on growth of resident individuals and regular recruitment to maintain suitable shell substrate. Boat wakes potentially physically displace oyster clumps. The objective of this research was to develop methods to track oyster clump position and biomass on two natural fringing oyster reefs in North Inlet estuary, South Carolina. Boat traffic (number of boats making wakes per day), oyster clump displacement (cm/d) over time, oyster biomass (g dry tissue), and condition index (biomass/g dry shell weight) were quantified from …

A Social–Ecological Odyssey In Fisheries And Wildlife Management, Andrew K. Carlson, William W. Taylor, Melissa R. Cronin, Mitchell J. Eaton, Mark A. Kaemingk, Andrea J. Reid, Ashley Trudeau

Nebraska Cooperative Fish and Wildlife Research Unit: Staff Publications

Aldo Leopold, famous ecologist and “father” of North American wildlife management, once said, “These are two things that interest me: the relation of people to each other, and the relation of people to land” (Leopold 1947). Ever prescient, Leopold recognized that natural resource management is fundamentally about humans and their relationship with nature well before conservation became an established way of thinking, much less the bedrock of entire professions. Similarly, amid the Green Revolution to increase agricultural production, in part, through widespread use of pesticides, renowned environmentalist and journalist Rachel Carson noted that we are all “a part of nature, …

Record Fledging Count From A Seven-Egg Clutch In The Cooper’S Hawk (Accipiter Cooperii), Robert N. Rosenfield, Sarah A. Sonsthagen, Ann Riddle-Berntsen, Evan Kuhel

Nebraska Cooperative Fish and Wildlife Research Unit: Staff Publications

Cooper’s Hawks (Accipiter cooperii) typically lay 3–5 eggs per clutch, rarely 6 eggs, and there are 2 accounts of 7-egg clutches and 1 record of a maximum 8-egg clutch for the species. Brood sizes of 3–5 young are common and the previous maximum brood count is 6 young. However, in 2019, we found an urban nest in Stevens Point, Wisconsin, with 7 eggs that resulted in a record high of 7 fledglings. We genetically confirmed that the attending male sired all the offspring and the attending female laid all 7 eggs. Larger body size of the tending adults …

Spatial And Temporal Behavioral Differences Between Angler-Access Types, Derek Kane, Mark A. Kaemingk, Christopher J. Chizinski, Kevin L. Pope

Nebraska Cooperative Fish and Wildlife Research Unit: Staff Publications

Recreational angler surveys typically collect information on how anglers access a fishery. Yet, it is unclear how this information is useful for fisheries management and conservation. The objective of this study was to compare behavior (e.g., party size, time fished, and numbers of fish released and harvested) of bank and boat anglers, representing two angler-access types. Bank and boat anglers were surveyed across 29 Nebraska waterbodies from April through October, 2007–2017. We documented behavioral differences between bank and boat anglers that varied as a function of waterbody size and season. Patterns of party size, time fished, and numbers of fish …

Understanding Sportsperson Retention And Reactivation Through License Purchasing Behavior, Matthew P. Hinrichs, Nathaniel B. Price, Matthew P. Gruntorad, Kevin L. Pope, Joseph J. Fontaine, Christopher J. Chizinski

Nebraska Cooperative Fish and Wildlife Research Unit: Staff Publications

Most state and provincial fish and wildlife agencies have access to important information about patterns in sportsperson participation through their license databases. Using transaction data from Nebraska Game and Parks Commission’s electronic hunting and fishing license system, we tracked license purchases of Nebraska, USA, resident license holders in 2010 through 2017. We categorized sportspersons by gender and yearly purchases as hunting only (Hunter), fishing only (Angler), a combination of hunting and fishing (Hunter–Angler), or no purchases (Inactive). The probability of movement among active sportsperson groups was limited and varied little based on initial group participation. The Angler group had the …

Weather And Exposure Period Affect Coyote Detection At Camera Traps, Anastasia E. Madsen, Lucia Corral Hurtado, Joseph J. Fontaine

Nebraska Cooperative Fish and Wildlife Research Unit: Staff Publications

Abstract Camera traps are an increasingly popular means to monitor wildlife populations. However, like other techniques for measuring populations, camera traps are subject to sources of error that may bias population estimates. Past studies accounting for detection error have failed to account for a simple but potentially widely pervasive source of environmental error: weather conditions. Using 5,108,416 photographs from 804 scent‐lured camera traps deployed in western Nebraska, USA, during spring and autumn of 2014 and 2015, we analyzed the relationship between weather conditions (barometric pressure, wind speed, precipitation, and temperature) and coyote (Canis latrans) detection probability. Using binomial …

Ecological Risk Assessment Of The Shark Bay Invertebrate Fisheries, Department Of Primary Industries And Regional Development

WA Marine Stewardship Council report series

The Department of Primary Industries and Regional Development (DPIRD, Department) in Western Australia (WA) uses an Ecosystem-Based Fisheries Management (EBFM) approach that considers all relevant ecological as well as social, economic and governance issues to deliver community outcomes (Fletcher et al. 2010; 2012). Ecological risk assessments (ERAs) are undertaken periodically to assess the impacts of fisheries on all the different components of the aquatic environments in which they operate.

Ecological Risk Assessment Of The Exmouth Gulf Prawn Managed Fishery, Department Of Primary Industries And Regional Development

WA Marine Stewardship Council report series

The Department of Primary Industries and Regional Development (DPIRD, Department) in Western Australia (WA) uses an Ecosystem-Based Fisheries Management (EBFM) approach that considers all relevant ecological as well as social, economic and governance issues to deliver community outcomes (Fletcher et al. 2010; 2012). Ecological risk assessments (ERAs) are undertaken periodically to assess the impacts of fisheries on all the different components of the aquatic environments in which they operate.

Ecological Risk Assessment Of The Abrolhos Islands And Mid-West Trawl Managed Fishery, Department Of Primary Industries And Regional Development

WA Marine Stewardship Council report series

The Department of Primary Industries and Regional Development (DPIRD, Department) in Western Australia (WA) uses an Ecosystem-Based Fisheries Management (EBFM) approach that considers all relevant ecological as well as social, economic and governance issues to deliver community outcomes (Fletcher et al. 2010; 2012). Ecological risk assessments (ERAs) are undertaken periodically to assess the impacts of fisheries on all the different components of the aquatic environments in which they operate.

Catfish Population Characteristics Among River Segments With Altered Fluvial Geomorphic Conditions In The Missouri River, Nebraska, Usa, Martin J. Hamel, Jonathan J. Spurgeon, Mark A. Pegg

School of Natural Resources: Faculty Publications

Alteration of river systems around the world has created novel environments that have been fragmented, homogenized, or transformed from their natural state, thus posing challenges for understanding how fish populations function. The Missouri River has undergone significant alteration through reservoir construction and channelization. Channel Catfish Ictalurus punctatus and Flathead Catfish Pylodictis olivaris both reside in various fragmented sections of the river, and there is a substantial gap in knowledge of how catfishes synchronously function in this modified system. From 2009 to 2018, we assessed catfishes with baited hoop nets and low-frequency electrofishing among four different areas: upper and lower unchannelized …

Use Of Otolith Chemistry To Assess Recruitment And Habitat Use Of A White Bass Fishery In A Nebraska Reservoir, Matthew A. Perrion, Mark A. Kaemingk, Keith D. Koupal, Casey W. Schoenebeck, Nate A. Bickford

Nebraska Cooperative Fish and Wildlife Research Unit: Staff Publications

Managing fisheries that exhibit variable annual recruitment is challenging, and maintenance stockings are often prescribed to minimize interannual population variation. Maintenance stockings are costly and may not be necessary if sufficient natural recruitment is occurring. Therefore, developing tools and techniques that can collectively assess hatching origin and subsequent habitat use of individuals would be valuable. Herein, we aimed to assess the efficacy of otolith chemistry techniques to (1) determine whether there was evidence of natural recruitment within an annually stocked white bass population and (2) examine the potential to describe spatial reservoir use of these age-0 fish. A sample of …

Using Northern Pike And Yellow Perch To Attempt A Trophic Cascade, Bryan Sea

Journal of Earth and Life Science

In the midwestern USA, water clarity has decreased in shallow lakes as a result of large populations of Fathead Minnow Pimephales promelas and agriculture that impact the life that depend on shallow habitats, such as waterfowl, fish, and aquatic plants. Northern Pike Esox lucius and Yellow Perch Perca flavescens were stocked in a few lakes in attempt to create a tropic cascade and reduce populations of nuisance Fathead Minnows. Northern Pike were stocked as fry and Yellow Perch were stocked as adults either pre-spawn or post-spawn. Lake managers hypothesized adult Yellow Perch would spawn and the age-0 Perch would feed …

Influence Of Mink Predation On Brown Trout Survival And Size-Structure In Rapid Creek, South Dakota, Austin Galinat

Electronic Theses and Dissertations

I compared movement, home range, habitat selection, and mortality among radio-tagged Brown Trout (Salmo trutta) at an American Mink (Neovison vison)-removal site, improved habitat site, and an undisturbed stream site in Rapid Creek, South Dakota. I observed high, post-surgery (> 26 days) survival rate (90%) of radio tagged Brown Trout. Average gross movement of Brown Trout was greater at the improved habitat site (127 m) compared to the mink removal (31 m) site, while average home range size (i.e., stream distance) among all three sites was not significantly different indicating strong site fidelity (125 to 200 m). Brown Trout movements …

Estimates Of Red Drum Mortality Via Acoustic Telemetry, T. Reid Nelson, Sean P. Powers

University Faculty and Staff Publications

Subadult (age < 3) Red Drum Sciaenops ocellatus support a valuable recreational fishery, and mortality estimates for young Red Drum are needed for proper management. To obtain these estimates, age-1 and age-2 Red Drum were implanted with acoustic transmitters and external Floy tags in two coastal Alabama rivers (Fowl and Dog rivers). Fates of tagged fish were inferred from stationary receiver detections and active relocations over 1 year. These fates were used in a Bayesian multistate model to estimate instantaneous monthly and annual mortality and emigration rates for each river and overall from both rivers. Instantaneous monthly fishing mortality (F) ranged from 0.001 to 0.112 (annual F = 0.414) in Dog River, from 0.001 to 0.126 in Fowl River (annual F = 0.309), and was 0.001–0.054 (annual F = 0.337) overall. Instantaneous monthly natural mortality (M) ranged from 0.001 to 0.002 (annual M= 0.069) in Dog River, from 0.001 to 0.036 (annual M= 0.178) in Fowl River, and from 0.001 to 0.017 (annual M= 0.090) overall. The overall annual estimate of instantaneous total mortality (Z) was 0.435. The median escapement percentage was estimated at 36.3% (95% posterior credible interval = 19.5–56.0%) using M and Z from the overall model. Unfortunately, the error on this estimate was large and inconclusive as to whether the 30% escapement goal for juvenile Red Drum to the adult population from Dog and Fowl rivers is being met. Monthly residency estimates were typically greater than 0.90, and overall annual residency was estimated at 0.716. Fishing mortality estimates from the current study are higher than recent catch curve estimates that did not include young Red Drum. These results demonstrate that young Red Drum need to be accounted for when generating mortality estimates and provide needed data for the Red Drum recreational fishery.

Habitat Associations And Co-Occurrence Patterns Of Two Estuarine-Dependent Predatory Fishes, Mariah C. Livernois, Sean P. Powers, Mark A. Albins, John F. Mareska

University Faculty and Staff Publications

Estuarine-dependent fishes experience a wide range of environmental conditions, and most species exhibit distinct associations with particular habitats. However, similar species or multiple conspecifics often overlap spatiotemporally, which can result in ecological interactions that have consequences for behaviors that can shape the structure and function of ecosystems. We used a long-term gill-net data set (2001–2015) to investigate the habitat associations and cooccurrence patterns of two estuarine-dependent predatory fishes, Red Drum Sciaenops ocellatus and Spotted Seatrout Cynoscion nebulosus, in coastal Alabama, USA. Both species were associated with similar environmental conditions, primarily low dissolved oxygen and low salinity, especially when temperature was …

Mitogenome Of Northern Long-Eared Bat, Sarah Gaughan, Kevin L. Pope, Jeremy A. White, Cliff Lemen, Patricia Freeman

Nebraska Cooperative Fish and Wildlife Research Unit: Staff Publications

The complete mitogenome of the northern long-eared bat (Myotis septentrionalis) was determined to be 17,362 bp and contained 22 tRNA genes, 2 rRNA genes and one control region. The whole genome base composition was 33.8% GC. Phylogenetic analysis suggests that M. septentrionalis be positioned next to M. auriculus in the Nearctic subclade of the Myotis genus. This complete mitochondrial genome provides essential molecular markers for resolving phylogeny and future conservation efforts.