Aquaculture and Fisheries Commons^™

Phenotypic Plasticity In Pigmentation: Investigating Coloration Patterns In Anablepsoides Hartii Population Responses To Environmental Variation, Jasdeep Kaur

2024 Spring Honors Capstone Projects - Archive

In this study, we investigated the color-changing capabilities of Trinidadian killifish, Anablepsoides hartii, through exposure to varied color conditions over defined periods of time. Our experiment aims to understand adaptive responses when killifish are subjected to different color backgrounds, exploring their mechanisms to change color. By subjecting the species to different environmental color variations, we sought to discern color change patterns, which could indicate adaptive responses related to camouflage, stress, behavior clues, and physiological adjustments. Carefully controlling environmental factors, we monitored and documented the fishes’ color changes, aiming to provide insights into the interplay between fish’s developmental plasticity and its …

Response Of Fish Assemblages To Increased Connectivity And Habitat Restoration In Bayou St. John, A Degraded Waterway In New Orleans, La, Alia Jones

LSU New Orleans Theses and Dissertations

Bayou St. John is a degraded waterway located within the City of New Orleans. The Bayou, which is disconnected from Lake Pontchartrain by floodgates, has undergone restoration efforts to improve connectivity through frequent floodgate openings and marsh habitat restoration outside of the floodgates. To assess possible responses of local fish assemblages to these restoration efforts, I analyzed long-term fish assemblage data from three sites located inside of the floodgates and one site located at the restored marsh outside of the floodgates. Two sites inside of the floodgates experienced significant changes in assemblages between the pre-opening period (2006-2012) and post-opening period …

An Examination Of The Eastern Nebraska And Western Iowa Flash Flood Event Of 6-7 August 1999, Catherine M. Zapotocny

National Oceanographic and Atmospheric Administration: Technical Reports and Related Materials

Flash flooding occurs each summer in eastern Nebraska and western Iowa. While 10-inch rains are extraordinary, it is not uncommon to have at least one excessive rain event during the annual convective season. A significant flash flood occurred in east central Nebraska and western Iowa the night of August 6, 1999 into the morning of August 7, 1999. Antecedent hydrologic conditions limited the loss of life, however considerable property damage resulted as the heavy rain fell over the urbanized areas in eastern Nebraska and western Iowa.

Several flash flood ingredients came together over the area. These meteorological factors are typical …

Trophic Ecology Of Black Swallowers (Scombriformes: Chiasmodontidae: Chiasmodon) In The Deep-Pelagic Gulf Of Mexico, Travis J. Kirk

All HCAS Student Capstones, Theses, and Dissertations

The ecology of deep-pelagic predatory fishes remains poorly understood despite their importance as ecosystem regulators and energy transfer vectors. This study investigated the trophic ecology of three species of the predatory fish genus Chiasmodon (“black swallowers”) in the Gulf of Mexico, a region that serves as an analog for the global low-latitude deep pelagial, the world’s largest cumulative ecosystem. Foraging habits (e.g., selectivity, chronology, daily ration) of an “advanced” evolutionary fish in a system that is otherwise dominated by basal fish taxa, were quantitatively estimated via high-resolution stomach content analysis. A quantitative dataset of both predator and prey abundance, the …

Genomic Population Structure Of Great Hammerhead Sharks (Sphyrna Mokarran) Across The Indo-Pacific, Naomi L. Brunjes, Samuel M. Williams, Alexis L. Levengood, Matt K. Broadhurst, Vincent Raoult, Alastair V. Harry, Matias Braccini, Madeline E. Green, Julia L. Y. Spaet, Michael J. Travers, Bonnie J. Holmes

Fisheries Research Articles

Context

Currently, little information exists describing the population structure of great hammerhead sharks (Sphyrna mokarran) in Australian waters. Aims

This study used single nucleotide polymorphisms to investigate fine-scale population structure in S. mokarran across the Indo-Pacific. Methods

DNA was extracted from 235 individuals across six Australian locations and a Red Sea outgroup. Population parameters were calculated and visualised to test structuring across locations. Key results

No fine-scale population structuring was observed for S. mokarran across the Indo-Pacific. However, population structuring occurred for all Australian locations when compared to the Red Sea outgroup. Conclusions

Findings suggest a single stock …

The Social And Economic Dimensions Of One Of The World’S Longest-Operating Shark Fisheries, Matias Braccini, Maddison Watt, Clinton Syers, Nick Blay, Matthew Navarro, Michael Burton

Fisheries Research Articles

Context

Social and economic information is limited for coastal commercial and recreational fisheries, particularly shark fisheries, which are perceived as unsustainable and as targeting sharks for fins.

Aims

To characterise the social and economic dimensions of one of the world’s few long-standing sustainable shark fisheries.

Methods

We reviewed historic data and surveyed stakeholders to understand the economic and social dimensions of the shark fishery currently operating in Western Australia.

Key results

Since the fishery’s historic peak, there has been a substantial reduction in the number of operating vessels and ports due to management intervention. For the vessels that have remained, …

Time Series Modeling To Ascertain Age In Fisheries Management, Kathleen Sue Kirch

OES Theses and Dissertations

The ability to assign accurate ages of fish is important to fisheries management. Accurate ageing allows for the most reliable age-based models to be used to support sustainability and maximize economic benefit. Structures used to age include bones, scales, and most commonly ear bones (otoliths). Assigning age relies on validating putative annual marks by evaluating accretional material laid down in patterns in fish otoliths, typically by marginal increment analysis. These patterns often take the shape of a sawtooth wave with an abrupt drop in accretion yearly to form an annual band and are typically validated qualitatively. Researchers have shown keen …

Ecological Risk Assessment For The Western Australian Large Pelagic Fish Resource, Kimberley A. Smith, Paul Lewis, Kendra Travaille, Brett M. Crisafulli, Liv Rynvis, Gabby E. Mitsopoulos

Fisheries Research Reports

In December 2023, the Department of Primary Industries and Regional Development (DPIRD, the Department) convened an ecological risk assessment (ERA) of the fisheries that access the Statewide Large Pelagic Fish Resource (Resource). This Resource comprises a range of tropical and temperate species including mackerels, billfish, kingfish, cobia, mahi mahi and tunas. This document contains the background information used to support the ERA risk scoring process, scoring from the workshop and a summary of the workshop discussions that were relevant to the risk scoring. This includes an overview of Western Australian commercial fisheries that access the Resource, with a focus on …

Ecological Risk Assessment For The Western Australian Cephalopod Resource, Cameron J. Desfosses, Kimberley A. Smith, Lachlan W.S. Strain, Dave Murphy, Keyley Hogan-West, Daniel Yeoh, Shannon Burchert, Linda Wiberg, Bec Oliver, Brett M. Crisafulli, Gabby E. Mitsopoulos

Fisheries Research Reports

On 27 October 2023, the Department of Primary Industries and Regional Development (DPIRD, Department) convened an ecological risk assessment (ERA) of the fisheries that access the statewide Cephalopod Resource (Resource), which comprises a range of octopus, squid and cuttlefish species. This document contains the background information used to support the ERA risk scoring process, and a summary of the workshop discussions that were relevant to the risk scoring. The background information includes an overview of Western Australian commercial fisheries that access the Resource, focusing primarily on the Octopus Interim Managed Fishery (OIMF), Cockburn Sound Line and Pot Managed Fishery (CSLPMF), …

Variations In Life-History Traits In Exploited And Unexploited Populations Of Perth Herring (Nematalosa Vlaminghi): Evidence For Density-Dependent Growth?, Kimberley A. Smith, Sybrand Alexander Hesp, Peter Graham Coulson

Fisheries Research Articles

Results supported the hypothesis of faster growth in exploited populations because of density-dependent processes. Environmental factors may also have contributed to trait differences between populations.

Long Term Sustainable Use Of Demersal Gillnet And Demersal Longline In Western Australia’S Temperate Shark Fisheries - Fisheries Research Report 340, Matias Braccini, Jack Parker, Daniela Waltrick, Maddison Watt, Nick Blay, Clinton Syers

Fisheries Research Reports

The Temperate Demersal Gillnet and Demersal Longline Fisheries (TDGDLF) are one of the main commercial shark fisheries in Australia. Most fishers in the TDGDLF use demersal gillnets to target sharks with scalefish taken in smaller amounts. Demersal longlines are also permitted but are not widely used. Demersal gillnets are size selective, but they do not necessarily discriminate among species, catching target and non-target species.

The Western Australian Fishing Industry Council (WAFIC) received funding as part of the Australian Government’s Our Marine Parks Grants Program to undertake research on the TDGDLF. This project was administered under the direction of a steering …

Animal Conservation In St. Louis, Kate O'Sullivan

Undergraduate Research Symposium

St. Louis has a multitude of organizations involved in the natural sciences. But how many of them actually contribute towards animal conservation? The St. Louis Zoo is an organization that focuses a lot of its effort on presentation, so how does that impact the funds that go towards actually saving the animals? I plan to dive into the different animal-based organizations in St. Louis and its surrounding areas, as well as discuss the positives and negatives of each organization. Furthermore, I will provide examples from several sources that I have been reviewing all year to support my claims. I plan …

Parental Environnement Influences Offspring Gene Expression In The Olympia Oyster, Ostrea Lurida., Mark S. Yeats

LSU Master's Theses

The Olympia Oyster is the only native oyster species on the Pacific coast of North America. Seasonality in water temperatures across this threatened species’ broad and fragmented range has been linked to its development, reproductive timing, reproductive activity, growth, and survival rates. Recent evidence suggests parental environments can have carry-over effects on larval growth and respiration rates in response to temperature. In this study, we utilized transcriptomic methods to identify the underlying mechanisms of this cross-generation plasticity. Sequence libraries of adult ctenidia tissue and pooled larval replicates were extracted and spawned from hatchery raised oysters of the same parentage immediately …

Puerulus Settlement Forecasting In A Harvest Strategy Evaluation Of The Rock Lobster Fishery In South Australia, Richard Mcgarvey, Adrian Linnane, John E. Feenstra, Janet M. Matthews, Lachlan J. Mcleay, Annabel Jones, Kyriakos Toumazos, Simon De Lestang

Fisheries Research Articles

Harvest strategies are utilised in the management of fishery resources globally. Critical to their success is harvest strategy evaluation, whereby future performance is assessed through projection modelling. Using the observed relationship between a puerulus settlement index and model-estimated recruitment, we evaluated a southern rock lobster (Jasus edwardsii) harvest strategy in South Australia. Short-to-medium puerulus settlement recruitment forecasting was incorporated into future projections of catch, catch per unit effort, and percent unexploited egg production (%UEP) during 2019–2022. Observed values of indicators that closely aligned with projected outputs indicated that puerulus forecasting underpinned reliable evaluation of future fishery performance. A …

A Preliminary Investigation Of Adherence To Shell Length Regulations And Adaptive Capacity Of The Turneffe Atoll Queen Conch (Aliger Gigas) Fishery, Belize, Elsa M. K. Brenner, Vincent Sollitto, Vincent Baribeau, Rebecca Branconi, Paul Simonin

Gulf and Caribbean Research

No abstract provided.

Arctic Report Card 2024, United States National Oceanic And Atmospheric Administration

National Oceanographic and Atmospheric Administration: Technical Reports and Related Materials

The Arctic Report Card from the United States National Oceanic and Atmospheric Administration for 2024.

Baby's First Jets: A Kinematic And Hydrodynamic Analysis Of Turning In Cuttlefish Hatchlings, Alissa M. Ganley, Paul S. Krueger, Ian K. Bartol

Biological Sciences Faculty Publications

Turning is an important aspect of life underwater, playing integral roles in predator avoidance, prey capture, and communication. While turning abilities have been explored in a diversity of adult nekton, little is currently known about turning in early ontogeny, especially for cephalopods. In this study, we investigated the turning abilities of hatchling common cuttlefish (Sepia officinalis, n = 49) and dwarf cuttlefish (Sepia bandensis, n = 30), using both kinematic and wake-based analyses. Using body tracking software and particle image velocimetry (PIV), we found that S. officinalis turned faster than S. bandensis, but both species …

Studying Redtail And Silver Surfperch In Sandy Beach Surf Zones With Mpas In Humboldt County, California, Usa, Noah G. Angell

Cal Poly Humboldt theses and projects

The sandy beach surf zone (SBSZ) represents an ecologically, economically, and culturally important marine habitat around the world. Despite its significance, the SBSZ has been historically underrepresented in marine and coastal ecology research. This in turn has caused many inshore marine species that prefer this habitat to be largely ignored. Two particular species, the Redtail surfperch Amphistichus rhodoterus and the Silver surfperch Hyperprosopon ellipticum, have not been well studied in the PNW region . There are merely three studies conducted on the Redtail surfperch in the Pacific Northwest region and the Silver surfperch has received even less research attention with …

Diel Vertical Migration Rates Of The Dinoflagellate Species Margalefidinium Polykrikoides In A Lower Chesapeake Bay Tributary, S. Clayton, Jacqueline B. Chrabot, Michael Echevarria, Leah Gibala-Smith, Kathryn Mogatas, Peter Bernhardt, Margaret R. Mulholland

OES Faculty Publications

Margalefidinium polykrikoides is a mixotrophic dinoflagellate harmful algal bloom (HAB) species that blooms annually in the lower Chesapeake Bay. M. polykrikoides undertakes a diel vertical migration (DVM) which may give it a competitive advantage over purely phototrophic organisms who cannot access deeper nutrient pools and allow it to form large toxic blooms. Laboratory-based estimates of M. polykrikoides’ DVM rates suggest that it is one of the fastest known dinoflagellate swimmers and understanding this behavior is likely important for modeling and predicting M. polykrikoides blooms. However, to date, no field-derived estimates of M. polykrikoides’ DVM rates have been made in the …

A Large-Scale Experiment Finds No Consistent Evidence Of Change In Mortality Or Commercial Productivity In Silverlip Pearl Oysters (Pinctada Maxima) Exposed To A Seismic Source Survey, Miles J G Parsons, Diego R. Barneche, Conrad W. Speed, Robert D. Mccauley, Ryan D. Day, Cecile Dang, Rebecca Fisher, Hosna Gholipour-Kanani, Stephen J. Newman

Fisheries Research Articles

High-intensity, impulsive sounds are used to locate oil and gas reserves during seismic exploration of the seafloor. The impacts of this noise pollution on the health and mortality of marine invertebrates are not well known, including the silverlip pearl oyster (Pinctada maxima), which comprises one of the world's last remaining significant wildstock pearl oyster fisheries, in northwestern Australia. We exposed ≈11,000 P. maxima to a four-day experimental seismic survey, plus one vessel-control day. After exposure, survival rates were monitored throughout a full two-year production cycle, and the number and quality of pearls produced at harvest were assessed. Oysters from two …

Catfish Neurocranium 3-D Scan, Pamela Gonzalez, Jarod Johnson, David Kerstetter

All Scans: Kerstetter Fisheries and Avian Ecology 3D Scan Series

No abstract provided.

Evaluating Post-Release Survival And Habitat Utilization Of Undersized Swordfish (Xiphias Gladius) Caught By The U.S Pelagic Longline Fishery In The Western North Atlantic, Zachery Young

All HCAS Student Capstones, Theses, and Dissertations

This study used survivorship pop-up archival tags (sPAT) tags to determine the post-release survival and habitat use from twenty-four undersized swordfish captured in the northwest Atlantic Ocean during normal operation within the commercial U.S pelagic longline industry. From these deployments, sixteen tags were used to determine post-release survival, and eight of the surviving tags were used to analyze short-term habitat utilization. Mortality was estimated to be 43.8% and was not significantly affected by variables such as fish size, latitude caught, or horizontal distance traveled. The relatively high mortality, in combination with the high at-haulback mortality reported in previous studies, does …

Biophysical Factors Affecting Habitat Suitability For Crassostrea Virginica, Jason D. Tilley

Dissertations

Oyster reefs provide a variety of important ecosystem services. However, the mortality rate of eastern oyster, Crassostrea virginica, the dominant species that produces oyster reefs in the northern Gulf of Mexico, is increasing at an alarming rate due to a variety of abiotic and biological factors. I examined how biophysical factors, including the less-studied fatty acid profiles of the suspended particulate matter on which oysters feed, influenced morphometric condition of C. virginica.

I sampled suspended particulate matter (SPM) and oysters in-situ in the western Mississippi Sound, which historically supported the majority of oyster production in Mississippi waters. Sampling …

State Of The Fisheries: Status Reports And Aquatic Resources Of Western Australia 2022/23, S.J. Newman, K.G. Santoro, D.J. Gaughan

Status Reports of the Fisheries and Aquatic Resources

Aquatic resources within Western Australia (WA) are in good condition, and this has positioned WA as a global leader in sustainable fisheries management. The sustainable fisheries of WA continue to support our strong economy and regional communities. Nonetheless, the lack of a consistent approach to build in the knowledge of Traditional Owners remains a gap in our longer term fisheries science in Western Australia.

Climate change and climate variability continues to impact fish stocks, challenging our ability to effectively monitor, assess, and manage fish stocks. We are continually working with our stakeholders, and the broader community to be adaptive, responsive, …

Culled Lionfish Sexual Maturity Over A Four-Year Timespan​, Christina Bland, Jurgen Hauer, Bilal Saleem, Noelle James

Symposium of Student Scholars

Lionfish are invasive in the Atlantic and the Caribbean. Like many other invasive species, they do not have any natural predators in these areas, so their population can grow unchecked. This can decrease the population of native fish species due to lionfish eating to excess. Because of their impact on native species, resource managers have incentivized lionfish hunting. Hunters were paid $6 USD for every pound of lionfish they brought in, so they possibly favored larger lionfish to increase their reward which would lead to an adaptive advantage for fish of smaller sizes. We hypothesized that the lionfish bounty program …

Vascum Muricatum - Caribbean Vase Snail, Jason E. Rosales, Amy Hirons Dr

Hirons Field Techniques

Acquired from the sandy beaches of South Florida, this is a shell of the Caibbean Vase snail otherwise known as Vasum murictum. Collected by Jason Rosales on 05/12/22.

An Intersection Of Science & Art: Vitrification Approaches And Open-Fabricated Tools For The Biomedical Model Sea Hare, Aplysia Californica, Allyssa M. Oune

LSU Master's Theses

The California sea hare (Aplysia californica) is an important biomedical model for molecular neurobiology, electrophysiology, learning, and memory due to their well-mapped and large neurons and well-characterized learning capabilities. The National Resource for Aplysia (NRA, University of Miami) maintains large stocks of live animals and relies on regular shipments of wild-caught individuals to maintain genetic diversity. This is labor and cost-intensive, and environmental changes could alter the availability of wild animals increasing the need to preserve this genetic resource. One solution is vitrification, ultra-fast cooling which produces an amorphous glass that minimizes damage to cells. Aplysia californica presents …

Identification Of Biomarkers Of Sub-Lethal Algal Toxin Exposure In Atlantic Salmon (Salmo Salar) And Chinook Salmon (Oncorhynchus Tshawytscha) Using Differential Gene Expression Analysis, Brandon Ellingson

Biology Theses

Atlantic Salmon (Salmo salar) and Chinook Salmon (Oncorhynchus tshawytscha) are important culturally, recreationally, economically, and are a common aquaculture species in Canada and the United States. In the Pacific Northwest, blooms of toxic algae result in millions of dollars annually in losses for salmonid aquaculture producers. Blooms of harmful cyanobacteria produce microcystins which have been linked to net-pen liver disease which has large financial impacts on net pen salmon operations. Microcystin-LR, the most toxic variant, bioaccumulates in the liver and disrupts normal cellular activity by inhibiting protein phosphatases leading to deleterious effects on growth, immune status, and liver function. To …

South Coast Offshore Crustacean Resource Of Western Australia Harvest Strategy, Department Of Primary Industries And Regional Development, Western Australia

Fisheries Management Papers

Harvest strategies for aquatic resources in Western Australia (WA) that are managed by the Department of Primary Industries and Regional Development (DPIRD, the Department) are formal documents that ensures decision-making processes are consistent with the principles of Ecologically Sustainable Development (ESD; Fletcher 2002) and Ecosystem Based Fisheries Management (EBFM; Fletcher et al. 2012). The objectives of ESD are reflected in the objects of the Fish Resources Management Act 1994 (FRMA) and the Aquatic Resources Management Act 2016 (ARMA), which is anticipated replace the FRMA once enacted. At this point, the Fish Resources Management Regulations 1995 (FRMR) is also anticipated to …

Alternate Day Feeding As A Cost-Effective Strategy For Tank Culture Of The Pacific Shortfin Eel Anguilla Bicolor Pacifica, Frolan A. Aya, John Carlo L. Unida, Maria Rowena R. Romana-Eguia, Nerissa D. Salayo

The Philippine Agricultural Scientist

There is a growing interest in the aquaculture of tropical anguillid eels as an export commodity. However, studies on feeding strategies, and the present demand to reduce feed costs need to be addressed to ensure the economic viability of eel farming. In this study, the effects of daily (DF) and alternate day (ADF) feeding on growth, feed utilization, body composition, blood chemistry, liver and intestinal morphology, and economic viability in the Pacific shortfin eel Anguilla bicolor pacifica were examined. Each feeding group of 30 elvers (166.25 ± 16.23 g mean initial wt) were randomly stocked in triplicate 4 m^{3 …}