Aquaculture and Fisheries Commons^™

The Influence Of Habitat Preference On Longitudinal Population Composition And Distribution Of Groupers (Serranidae) In Chumbe Island Coral Park, Zanzibar Tanzania, Caroline Daley

Independent Study Project (ISP) Collection

A survey of six common grouper (Serranidae) species was conducted on both the western protected and eastern unprotected reefs around Chumbe Island. Species, estimated maturity, and fundamental niche and general habitat preference was extrapolated based on observed realized niche and qualified according to substrate, depth, slope position, and general reef region. Abundance, biomass density, and biodiversity of Serranid populations were compared among locations on the reef with habitat preference in mind in order to best assess how habitat influences population composition, distribution, and health. The results of this study provide depth to previous research on the protected reef and indicate …

Fish Diversity And Distribution In The Seagrass-Coral Reef Continuum At Two Sites Off The Western Coast Of Isla Bastimentos, Bocas Del Toro, Panama, Kathy Liu

Independent Study Project (ISP) Collection

Coral reefs are the most diverse marine ecosystem and the largest biogenic structure on Earth. They serve as shelter for many reef fishes and are a food source for resident and visiting fish species. In the tropics, coral reefs are often in close proximity to seagrass beds and the two contiguous marine habitats are not only highly interconnected but also highly understudied. The seagrass-coral reef continuum offers a wide array of services to human society as well as to various life stages of reef fishes resulting in diel, temporal, or yearly migrations of fish between the two habitats. Tropical reef …

Short-Term Low Salinity Mitigates Effects Of Oil And Dispersant On Juvenile Eastern Oysters: A Laboratory Experiment With Implications For Oil Spill Response Activities, Meagan N. Schrandt, Sean Powers, F.Scott Rikard, Wilawan Thongda, Eric Peatman

University Faculty and Staff Publications

Following the Deepwater Horizon oil spill, eastern oyster (Crassostrea virginica) reefs in the northern Gulf of Mexico were exposed to oil and various associated clean-up activities that may have compromised oyster reef health. Included in the exposure was oil, dispersant, and in some locales, atypical salinity regimes. Oil and dispersants can be detrimental to oysters and the effects of salinity depend on the level. In addition to these extrinsic factors, genetic diversity of oyster populations may help the oysters respond to stressors, as demonstrated in other systems. We used a 3×3×2 factorial design to experimentally examine the effects …

The Microbiome Of The Gastrointestinal Tract Of A Range-Shifting Marine Herbivorous Fish, Jacquelyn Jones, Joseph D. Dibattista, Michael Stat, Michael Bunce, Mary C. Boyce, David Fairclough, Michael J. Travers, Megan J. Huggett

Fisheries Research Articles

Globally, marine species’ distributions are being modified due to rising ocean temperatures. Increasing evidence suggests a circum-global pattern of poleward extensions in the distributions of many tropical herbivorous species, including the ecologically important rabbitfish Siganus fuscescens. Adaptability of a species to such new environments may be heavily influenced by the composition of their gastrointestinal microbe fauna, which is fundamentally important to animal health. Siganus fuscescens thus provides an opportunity to assess the stability of gastrointestinal microbes under varying environmental conditions. The gastrointestinal microbial communities of S. fuscescens were characterized over 2,000 km of Australia’s western coast, from tropical to …

Cellular Mechanisms Of Slime Gland Refilling In Pacific Hagfish (Eptatretus Stoutii), Sarah Schorno, Todd E. Gillis, Douglas S. Fudge

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

Hagfishes use their defensive slime to ward off gill-breathing predators. Slime gland refilling is a surprisingly slow process, and previous research has shown that the composition of the slime exudate changes significantly during refilling, which likely has consequences for the functionality of the slime. This study set out to expand our understanding of slime gland refilling by examining the cellular processes involved in refilling of the glands, as well as determining where in the gland the main slime cells – the gland thread cells and gland mucous cells – arise. Slime glands were electro-stimulated to exhaust their slime stores, left …

Using Local Fishery Monitoring To Understand Small-Scale Coastal Fisheries In Tanzania, Matthew Robertson

LSU Master's Theses

Nearshore marine fisheries provide the main source of protein for nearly 9 million people in the coastal villages of Tanzania, yet for decades the fisheries have shown signs of overexploitation. These fisheries are small-scale and co-managed by local coastal communities in groups known as Beach Management Units (BMUs). BMUs monitor individual fishing trip data (e.g. gear, vessel, taxa); however, these data have only been analyzed in nationally aggregated statistics and to our knowledge, are not presently used in management decision making. The present thesis aimed to identify the forms of data and information that local fishery monitoring can record about …

Combined Use Of Edna Metabarcoding And Video Surveillance For The Assessment Of Fish Biodiversity, Michael Stat, Jeffrey John, Joseph D. Dibattista, Stephen J. Newman, Michael Bunce, Euan S. Harvey

Fisheries Research Articles

Monitoring communities of fish is important for the management and sustainability of fisheries and marine ecosystems. Baited remote underwater video systems (BRUVs) are among the most effective nondestructive techniques for sampling bony fishes and elasmobranchs (sharks, rays, and skates). However, BRUVs sample visually conspicuous biota; hence, some taxa are undersampled or not recorded at all. We compared the diversity of fishes characterized using BRUVs with diversity detected via environmental DNA (eDNA) metabarcoding. We sampled seawater and captured BRUVs imagery at 48 locales that included reef and seagrass beds inside and outside a marine reserve (Jurien Bay in Western Australia). Eighty-two …

Management Strategies To Minimize The Dredging Impacts Of Coastal Development On Fish And Fisheries, Amelia S. Wenger, Christopher A. Rawson, Shaun K. Wilson, Stephen J. Newman, Michael J. Travers, Scott Atkinson, Nicola Browne, Douglas Clarke, Martial Depczynski, Paul L A Erftemeijer, Richard D. Evans, Jean-Paul A. Hobbs, Jennifer L. Mcilwain, Dianne Mclean, Benjamin J. Saunders, Euan S. Harvey

Fisheries Research Articles

Accelerating coastal development and shipping activities dictate that dredging operations will intensify, increasing potential impacts to fishes. Coastal fishes have high economic, ecological, and conservation significance and there is a need for evidence-based, quantitative guidelines on how to mitigate the impacts of dredging activities. We assess the potential risk from dredging to coastal fish and fisheries on a global scale. We then develop quantitative guidelines for two management strategies: threshold reference values and seasonal restrictions. Globally, threatened species and nearshore fisheries occur within close proximity to ports. We find that maintaining suspended sediment concentrations below 44 mg/L (15–121 bootstrapped CI) …

Geography And Island Geomorphology Shape Fish Assemblage Structure On Isolated Coral Reef Systems, Scott Bennett, Andrew R. Halford, Howard Choat, Jean-Paul A. Hobbs, Julia Santana-Garcon, Anthony M. Ayling, Euan S. Harvey, Stephen J. Newman

Fisheries Research Articles

We quantify the relative importance of multi-scale drivers of reef fish assemblage structure on isolated coral reefs at the intersection of the Indian and Indo-Pacific biogeographical provinces. Large (>30 cm), functionally-important and commonly targeted species of fish, were surveyed on the outer reef crest/front at 38 coral reef sites spread across three oceanic coral reef systems (i.e. Christmas Island, Cocos (Keeling) Islands and the Rowley Shoals), in the tropical Indian Ocean (c. 1.126 x 106 km2). The effects of coral cover, exposure, fishing pressure, lagoon size and geographical context, on observed patterns of fish assemblage structure were …

Emptying And Refilling Of Slime Glands In Atlantic (Myxine Glutinosa) And Pacific (Eptatretus Stoutii) Hagfishes, Sarah Schorno, Todd E. Gillis, Douglas S. Fudge

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

Hagfishes are known for their unique defensive slime, which they use toward off gill-breathing predators. Although much is known about the slime cells (gland thread cells and gland mucous cells), little is known about how long slime gland refilling takes, or how slime composition changes with refilling or repeated stimulation of the same gland. Slime glands can be individually electrostimulated to release slime, and this technique was used to measure slime gland refilling times for Atlantic and Pacific hagfish. The amount of exudate produced, the composition of the exudate and the morphometrics of slime cells were analyzed during refilling, and …

Fisheries Exploitation By Albatross Quantified With Lipid Analysis, Melinda Conners, Chandra Goetsch, Suzanne Budge, William Walker, Yoko Mitani, Daniel Costa, Scott Shaffer

Faculty Publications, Biological Sciences

Mortality from incidental bycatch in longline fishery operations is a global threat to seabird populations, and especially so for the albatross family (Diomedeidae) in which 15 out of 22 species are threatened with extinction. Despite the risks, fisheries remain attractive to many species of seabird by providing access to high-energy foods in the form of discarded fish and offal, target fish, and baited hooks. Current policy regarding fisheries management is increasingly aimed at discard reform, exemplified by a discard ban initiated in the European Union Common Fisheries Policy in 2014. While there is global agreement on the importance of minimizing …

The Effect Of Hypoxia On The Nervous System Of Aplysia Californica, Victor Escalona, Lynne Annette Fieber, Joseph Serafy

2018 Entries

The intertidal zone of California’s Pacific coast is home to the marine snail known as Aplysia californica, an organism that has found use as a model in experiments focused on understanding the basis of learning and memory. Its simple nervous system consisting of easily identifiable neurons, its life span of a year, and a readily-accessed aquacultured source from the National Resource for Aplysia make it an excellent model for ontogenetic, neural, and behavioral studies. Here, however, the focus was on strategies this species uses to survive in an environment rife with risks of hypoxia and desiccation during the tidal …

The Life History Of Faxonius Rusticus (Girard, 1852) In Sunfish Creek, Monroe County, Ohio, Kyle Mcgill

Theses, Dissertations and Capstones

Crayfish are among the most imperiled faunal groups globally. The continued spread of invasive species is a major impact to crayfish. Invasive species, much like the native species, are often understudied. As declines continue, invasive species spread, and new species are discovered; additional life history studies are as important as ever for crayfish conservation. Life history data was collected for rusty crayfish (Faxonius rusticus) from October 2017 to September 2018 in Sunfish Creek, Monroe County, Ohio. Faxonius rusticus are native to the Ohio River drainage around Cincinnati, Ohio but have extensively expanded their range over the past 30 years. Sunfish …

Our Changing Climate, David R. Easterling, David W. Fahey, Katherine Hayhoe, Sarah Doherty, James P. Kossin, William V. Sweet, Russell S. Vose, Michael F. Wehner, Donald J. Wuebbels

National Oceanographic and Atmospheric Administration: Technical Reports and Related Materials

This chapter is based on the Climate Science Special Report (CSSR), which is Volume I of the Fourth National Climate Assessment (available at science2017.globalchange.gov). The Key Messages and the majority of the content represent the highlights of CSSR, updated with recent references relevant to these topics. The interested reader is referred to the relevant chapter(s) in CSSR for more detail on each of the Key Messages that follow.

Description Of A New Sound Produced By Nassau Grouper At Spawning Aggregation Sites, Timothy J. Rowell, Michelle T. Schärer, Richard S. Appeldoorn

Gulf and Caribbean Research

This study identified a new sound produced by Nassau Grouper in association with, although potentially not exclusive to, an agonistic interaction at a spawning aggregation. We have also provided a behavioral and acoustic description for identification of this sound in future studies. The discovery of a third type of sound produced by Nassau Grouper further highlights the importance of acoustic communication coupled with visual displays in fishes. Furthermore, identification of a new sound increases the ability to document the presence of this endangered species at spawning sites. Future efforts may reveal that the sound is produced within additional behavioral contexts …

The Spatial Context Of “Winning” In Mpa Network Design: Location Matters, Andrew S. Kough, Claire B. Paris, Mark J. Butler Iv

Biological Sciences Faculty Publications

(First paragraph) Chollett et al. (2017) make the case that a local network of marine protected areas (MPAs) enhances fisheries for Caribbean spiny lobster (Panulirus argus) off the coast of Honduras. However, their simulation focused on one ecoregion where self-recruitment is predicted to be among the highest in the Caribbean (Cowen, Paris, & Srinivasan, 2006). The shallow banks and scattered cays of the Honduran-Nicaraguan Rise, separating the Cayman and Colombian basins, create an obstacle to the powerful southern Caribbean jet (Richardson, 2005), fostering an ideal location for topographically steered eddies and larval retention. Local management,whether based on traditional …

River Report. State Of The Lower St. Johns River Basin, Florida: Water Quality, Fisheries, Aquatic Life, Contaminants, 2018, Environmental Protection Board, City Of Jacksonville, University Of North Florida, Jacksonville University, Gerry Pinto, Gretchen Bielmyer-Fraser, Nisse Goldberg, Anthony Ouellette, An-Phong Le, Radha Pyati, Charles Closmann, Brian P. Zoellner

State of the River Report

No abstract provided.

Diversity And Phylogenetic Relationships Of European Species Of Crepidostomum Braun, 1900 (Trematoda: Allocreadiidae) Based On Rdna, With Special Reference To Crepidostomum Oschmarini Zhokhov & Pugacheva, 1998, Romualda Petkevičiūtė, Virmantas Stunžėnas, Alexander E. Zhokhov, Larisa G. Poddubnaya, Gražina Stanevičiūtė

Harold W. Manter Laboratory of Parasitology: Faculty Publications

Background

Within the genus Crepidostomum Braun, 1900, identification of species and taxonomic decisions made only on the basis of adult morphology have resulted in great problems associated with evaluating actual diversity and validity of species. Life cycle data, while equal in importance to adult characters, are scarce, controversial or incomplete for most Crepidostomum spp. In this study, rDNA sequences generated from adult and larval Crepidostomum spp. and some other allocreadiid species were analyzed to reveal the diversity and phylogenetic relationships of the species and their host range. Detailed morphological description based on light microscopy, SEM tegumental surface topography and genetic …

Estimating Exploitation Rates In The Alabama Red Snapper Fishery Using A High-Reward Tag–Recapture Approach, Dana K. Sackett, Mattgew Catalano, J. Marcus Drymon, Sean P. Powers, Mark Albins

University Faculty and Staff Publications

Accurate estimates of exploitation are essential to managing an exploited fishery. However, these estimates are often dependent on the area and vulnerable sizes of fish considered in a study. High-reward tagging studies offer a simple and direct approach to estimating exploitation rates at these various scales and in examining how model parameters impact exploitation rate estimates. These methods can ultimately provide a better understanding of the spatial dynamics of exploitation at smaller local and regional scales within a fishery—a measure often needed for more site-attached species, such as the Red Snapper Lutjanus campechanus. We used this approach to tag 724 …

Characterizing Habitat Preference In Three Nearshore Reef-Associated Fishes Through Collaborative Research, Public Data, And Open Source Software, Ian D. Kelmartin

Cal Poly Humboldt theses and projects

Black rockfish (Sebastes melanops), canary rockfish (S. pinniger), and lingcod (Ophidion elongatus) are important species in Northern California’s nearshore recreational and commercial fisheries. These species are associated with nearshore rocky reefs and are among a suite of species intended to benefit from the establishment of the marine protected area (MPA) network along the Northern California Coast in 2012.

Many aspects of the North Coast’s nearshore ecosystem remain poorly studied, including the spatial distribution and habitat associations of nearshore fish species. This study used data collected from Cape Mendocino State Marine Reserve (SMR), Ten Mile …

Evaluating Elasmobranch Bycatch And Shark Depredation In The Georgia Shrimp Fishery, Matthew M. Scanlon

College of Graduate Studies: Theses & Dissertations

The Georgia shrimp fishery has seen a dramatic decrease in profit and productivity since the 1980’s due to a number of economic factors. Additional, yet undocumented, pressures on this fishery include interactions between foraging sharks with trawl gear. Fishermen report that sharks frequently bite nets in an attempt to prey on netted fish, resulting in large holes in the gear. Further elasmobranch interactions with trawl gear occur as bycatch; shrimp trawls represent nearly 100% of elasmobranch commercial bycatch in Georgia state waters, the species composition of which is largely unstudied. Shark interactions with nets were detailed through fishery-dependent observations on …

Compression And Relaxation Of Fishing Effort In Response To Changes In Length Of Fishing Season For Red Snapper (Lutjanus Campechanus) In The Northern Gulf Of Mexico, Sean P. Powers, Kevin Anson

University Faculty and Staff Publications

A standard method used by fisheries managers to decrease catch and effort is to shorten the length of a fishery; however, data on recreational angler response to this simple approach are surprisingly lacking. We assessed the effect of variable season length on daily fishing effort, measured by using numbers of boat launches per day, anglers per boat, and anglers per day from video observations, in the recreational sector of the federal fishery for red snapper (Lutjanus campechanus) in coastal Alabama. From 2012 through 2017, season length fluctuated from 3 to 40 d. Daily effort, measured by using mean number of …

Oceanic, Latitudinal, And Sex-Specific Variation In Demography Of A Tropical Deepwater Snapper Across The Indo-Pacific Region, Ashley J. Williams, C. Wakefield, Stephen J. Newman, Elodie Vourey, Francisco J. Abascal, Tuikolongahau Halafihi, Jeremie Kaltavara, Simon J. Nicol

Fisheries Research Articles

Deepwater tropical fisheries provide an important source of income and protein to Pacific and Indian Ocean coastal communities who are highly dependent on fish for food security. The development of quantitative assessments and management strategies for these deepwater fisheries has been hindered by insufficient biological and fisheries data. We examine the age-specific demography of the pygmy ruby snapper Etelis carbunculus, an important target species in tropical deepwater fisheries, across 90° of longitude and 20° of latitude in the Pacific and Indian Oceans. Our results show that growth of E. carbunculus varies significantly between oceans and sexes and across latitudes …

The Utility Of Bioenergetics Modelling In Quantifying Predation Rates Of Marine Apex Predators: Ecological And Fisheries Implications, A. Barnett, M. Braccini, C. L. Dudgeon, N. L. Payne, K. G. Abrantes, M. Sheaves, E. P. Snelling

Fisheries Research Articles

Predators play a crucial role in the structure and function of ecosystems. However, the magnitude of this role is often unclear, particularly for large marine predators, as predation rates are difficult to measure directly. If relevant biotic and abiotic parameters can be obtained, then bioenergetics modelling offers an alternative approach to estimating predation rates, and can provide new insights into ecological processes. We integrate demographic and ecological data for a marine apex predator, the broadnose sevengill shark Notorynchus cepedianus, with energetics data from the literature, to construct a bioenergetics model to quantify predation rates on key fisheries species in …

Prey Naïveté And Predator-Prey Interactions Between Pterois Volitans, Pomacentridae, And Tetraodontidae In Two Reefs In The Guna Yala Archipelago, Panama, Jesse Garrett-Larsen

Independent Study Project (ISP) Collection

The invasion of Pterois volitans along the Atlantic coast of the Americas is one of the top marine conservation issues of the century. Prey naïveté has been suggested as a mechanism for the success of P. volitans, but conclusive field observations have not been completed. This study tested for prey naïveté in situ by comparing time spent by Pomacentridae and Tetraodontidae in close proximity to P. volitans and a native predator, Cephalopholis cruentata. Difference in time spent by Pomacentridae and Tetraodontidae in the presence of the two predators was observed. The predators P. volitans and C. cruentata were sequentially observed …

Ecosystem Biomonitoring With Edna: Metabarcoding Across The Tree Of Life In A Tropical Marine Environment, Michael Stat, Megan J. Huggett, Rachele Bernasconi, Joseph D. Dibattista, Tina Berry, Stephen J. Newman, Euan S. Harvey, Michael Bunce

Fisheries Research Articles

Effective marine management requires comprehensive data on the status of marine biodiversity. However, efficient methods that can document biodiversity in our oceans are currently lacking. Environmental DNA (eDNA) sourced from seawater offers a new avenue for investigating the biota in marine ecosystems. Here, we investigated the potential of eDNA to inform on the breadth of biodiversity present in a tropical marine environment. Directly sequencing eDNA from seawater using a shotgun approach resulted in only 0.34% of 22.3 million reads assigning to eukaryotes, highlighting the inefficiency of this method for assessing eukaryotic diversity. In contrast, using ‘tree of life’ (ToL) metabarcoding …

Genomic Signatures Of Local Adaptation Reveal Source-Sink Dynamics In A High Gene Flow Fish Species, Katherine Cure, Luke Thomas, Jean-Paul A. Hobbs, David V. Fairclough, Winn Jason Kennington

Fisheries Research Articles

Understanding source-sink dynamics is important for conservation management, particularly when climatic events alter species’ distributions. Following a 2011 ‘marine heatwave’ in Western Australia, we observed high recruitment of the endemic fisheries target species Choerodon rubescens, towards the cooler (southern) end of its distribution. Here, we use a genome wide set of 14 559 single-nucleotide polymorphisms (SNPs) to identify the likely source population for this recruitment event. Most loci (76%) showed low genetic divergence across the species’ range, indicating high levels of gene flow and confirming previous findings using neutral microsatellite markers. However, a small proportion of loci showed strong …

The Effect Of "Casitas" On Lobster Biology And Fishery Sustainability In The Bahamas, Lester George Gittens

Biological Sciences Theses & Dissertations

“Casitas” (artificial table-like structures) are a commercial fishing gear used to harvest Caribbean spiny lobster (Panulirus argus) in the Caribbean and in The Bahamas, where lobster is the most valuable fishery. Yet, casitas are largely unregulated in The Bahamas and they may threaten fishery sustainability through alteration of lobster growth, disease, or mortality rates and due to insufficient information concerning their number and location. Focusing on the lobster fishery in The Bahamas, my objectives were to: (1) investigate the mortality, growth, and susceptibility to disease of lobsters collected in casitas compared to wooden traps and those living in …

Strong Population Structure Deduced From Genetics, Otolith Chemistry And Parasite Abundances Explains Vulnerability To Localized Fishery Collapse In A Large Sciaenid Fish, Protonibea Diacanthus, Laura Taillebois, Diane P. Barton, David Crook, Thor Saunders, Jonathan Taylor, Mark Hearnden, Richard J. Saunders, Stephen J. Newman, Michael J. Travers, David J. Welch, Alan Greig, Christine Dudgeon, Safia Maher, Jennifer Ovenden

Fisheries Research Articles

As pressure on coastal marine resources is increasing globally, the need to quantitatively assess vulnerable fish stocks is crucial in order to avoid the ecological consequences of stock depletions. Species of Sciaenidae (croakers, drums) are important components of tropical and temperate fisheries and are especially vulnerable to exploitation. The black-spotted croaker, Protonibea diacanthus, is the only large sciaenid in coastal waters of northern Australia where it is targeted by commercial, recreational and indigenous fishers due to its food value and predictable aggregating behaviour. Localized declines in the abundance of this species have been observed, highlighting the urgent requirement by managers …

Roe, Edd (Fa 1027), Manuscripts & Folklife Archives

Folklife Archives Finding Aids

Finding aid only for Folklife Archives Project 1027. Student folk studies project titled: “Fishing,” which includes interviews and survey sheets about fishing in the Pennyroyal Region of Kentucky. Sheets may include information about a fish, bait, joke, belief, informant’s name, and motif index number.