Aquaculture and Fisheries Commons^™

Recruitment Facilitation And Spatial Pattern Formation In Soft-Bottom Mussel Beds, John A. Commito, Ann E. Commito, Rutherford V. Platt, Benjamin M. Grupe, Wendy Dow Piniak, Natasha J. Gownaris, Kyle A. Reeves, Allison M. Vissichelli

Environmental Studies Faculty Publications

Mussels (Mytilus edulis) build massive, spatially complex, biogenic structures that alter the biotic and abiotic environment and provide a variety of ecosystem services. Unlike rocky shores, where mussels can attach to the primary substrate, soft sediments are unsuitable for mussel attachment. We used a simple lattice model, field sampling, and field and laboratory experiments to examine facilitation of recruitment (i.e., preferential larval, juvenile, and adult attachment to mussel biogenic structure) and its role in the development of power-law spatial patterns observed in Maine, USA, soft-bottom mussel beds. The model demonstrated that recruitment facilitation produces power-law spatial structure similar …

Fisheries Management Paper No.266 - Exmouth Gulf Prawn Managed Fishery Bycatch Action Plan 2014-2019. Version 1.0, Department Of Fisheries, Western Australia

Fisheries Management Papers

Bycatch is described as the part of the catch which is returned to the sea (usually referred to as non-retained or discarded) either because it has no commercial value or because legislative requirements preclude it being retained. Thus, this Bycatch Action Plan (BAP) includes unmarketable finfish and invertebrate species, along with endangered, threatened and protected (ETP) species, such as marine mammals, reptiles and some elasmobranchs.

It is Government policy to minimise bycatch in all commercial fisheries. This BAP details a program of actions to address bycatch issues in the Exmouth Gulf Prawn Managed Fishery (EGPMF), in accordance with the EGPMF …

Fisheries Management Paper No.265 - Exmouth Gulf Prawn Managed Fishery Harvest Strategy 2014 - 2019 Version 1.0, Department Of Fisheries Western Australia

Fisheries Management Papers

This fishery-specific harvest strategy has been developed in line with the Department of Fisheries' (Department) over-arching Harvest Strategy Policy for Aquatic Resources (Department of Fisheries in prep.) and in consultation with licensees. The broad scope of the Harvest Strategy Policy for Aquatic Resources is consistent with the National Harvest Strategy Guidelines but as well as considering all retained target species, it also incorporates retained non-target species, bycatch' and other ecological components to ensure the risks to these elements are managed effectively.

The Exmouth Gulf Prawn Managed Fishery (EGPMF) harvest strategy outlines the longand short-term fishery-specific management objectives; a description of …

The Status Of Fishes In The Missouri River, Nebraska: Lake Sturgeon (Acipenser Fulvescens), Kirk D. Steffensen, Sam Stukel, Dane A. Shuman

Transactions of the Nebraska Academy of Sciences and Affiliated Societies

Lake Sturgeon (Acipenser fulvescens) occurrences in the Missouri River along Nebraska’s eastern border are historically sporadic and rare. Presently, the wild Lake Sturgeon population in this river reach may be extirpated. A Recovery Program initiated by the Missouri Department of Conservation (MDC) has stocked almost 150,000 hatchery-reared Lake Sturgeon into the lower Missouri River at several sites in Missouri. As a result, the number of Lake Sturgeon collected has increased. Since monitoring began in 2003, no Lake Sturgeon have been collected above Gavins Point Dam while 40 fish were collected downstream of Gavins Point Dam. The majority of …

Predictors Patterns And Processes Of Extinction Risk In Porgies And Seabreams (Family: Sparidae), Mia Theresa B. Conteros

Biological Sciences Theses & Dissertations

A variety of human-induced changes are having profound impacts on the marine environment, and no area on the planet remains unaffected by the detrimental effects of our activities. These stressors can potentially lead to synergistic effects, causing accelerated biodiversity loss and diminished ecosystem functioning. Identification and understanding of the factors that drive species to heightened risk of extinction are important goals in conservation.

The Sparidae are commercially important and ecologically complex marine fishes; global extinction risk assessments using the IUCN Red List of Threatened Species methodology show that 9% (13 species) have increased vulnerability to population declines from intense fishing …

The Status Of Fishes In The Missouri River, Nebraska: Shovelnose Sturgeon (Scaphirhynchus Platorynchus), Kirk D. Steffensen, Sam Stukel, Dane A. Shuman

Transactions of the Nebraska Academy of Sciences and Affiliated Societies

The Shovelnose Sturgeon Scaphirhynchus platorynchus remains the most abundant riverine sturgeon species in North American despite the anthropogenic modifications that have occurred throughout their historic range; however, their populations have declined throughout Nebraska since the construction of Fort Randall and Gavins Point Dams. Therefore, the objective of this study was to present the current status of Shovelnose Sturgeon in the Missouri River along Nebraska’s border. Data was acquired from 2003 to 2012 from all reaches of the Missouri River along Nebraska’s eastern border. Catch rates of Shovelnose Sturgeon increased in a downstream trend and were highest in the reach below …

Application Of A Bioenergetics Framework For Assessing Sub-Lethal Effects Of Pollutants In The Freshwater Mussel Elliptio Complanata, Christopher G. Goodchild

All Theses And Dissertations

Although biomarkers are frequently used to assess sublethal effects of contaminants, a lack of mechanistic linkages to higher-level effects limits the predictive power of biomarkers. Bioenergetics has been proposed as a framework for linking cellular effects to whole-animal effects. We investigated sublethal effects of exposure to wastewater treatment facility effluent in freshwater mussels in situ, thereby capturing ecologically relevant exposure conditions. Our study focused on the energetic biomarker AMP-activated protein kinase (AMPK), while also considering more traditional biomarkers like heat shock proteins (HSP70), and antioxidant enzymes (i.e., superoxide dismutase (SOD), glutathione-S-transferase (GST)). We examined biomarkers at mRNA and protein levels. …

South Atlantic Stream Fish Assemblages: Multi-Scale Structuring Factors, Trait Associations And Channelization, And Responses To Dam Removal, Cathy Marion

All Dissertations

South Atlantic coastal plain wadeable streams are unique and understudied freshwater environments that provide crucial habitats for a wide range of aquatic taxa. In Chapter 1, we investigated patterns in fish assemblages across South Carolina's coastal plain, and developed statistical models to identify the dominant multi-scale abiotic environmental factors that influence assemblage structure. Our analyses indicated the presence of four predominant fish assemblages that commonly occur in the coastal plain, which we termed the: 1) fluvial, 2) eastern mudminnow, 3) centrarchid, and 4) non-fluvial assemblages. Natural geographic gradients and instream habitat parameters associated with velocity, channel form, stream size, and …

Juvenile Green Sturgeon (Acipenser Medirostris) And White Sturgeon (Acipenser Transmontanus) Behavior Near Water-Diversion Fish Screens: Experiments In A Laboratory Swimming Fume, Jamilynn B. Poletto, Dennis E. Cocherell, Natalie Ho, Joseph J. Cech Jr., A. Peter Klimley, Nann A. Fangue

School of Natural Resources: Faculty Publications

Water diversions that extract fresh water for urban, industrial, and agricultural uses, as well as export to southern California, are prevalent throughout the Sacramento–San Joaquin watershed. Many water diversions are fitted with fish-exclusion screens designed to prevent fish from entrainment (i.e., being drawn in). The impact of fish screens on the behavior of migrating juvenile fishes remains largely unknown, especially for threatened species such as sturgeon. We placed individual juvenile green (Acipenser medirostris) or white (Acipenser transmontanus) sturgeon in a laboratory swimming flume in the presence of standard fish screens (2 mm bar spacing) at two …

Harvest Incentives: A Tool For Managing Aquatic Invasive Species, Bob Wiltshire, Nathan Stone, Marshall Meyers, Bill Hyatt, Lori Williams, Jason Goldberg, Susan Pasko, Leah Elwell

National Invasive Species Council

Conclusion

The success of any harvest incentive program to address aquatic invasive species will depend upon numerous biological, socioeconomic, and legal considerations. Programs that encourage harvest may be a successful management tool in targeting small, distinct populations; in high priority areas within a larger invasion; or they may play a supplementary role within larger control programs. Their use, however, will require careful review, planning, and monitoring to ensure success and that they do not unintentionally lead to further spread of invasive species, cause additional harm to native species, or waste valuable resources.

Port Of Gloucester, Ma: Groundfish Port Recovery And Revitalization Plan By The City Of Gloucester, Urban Harbors Institute, University Of Massachusetts Boston, City Of Gloucester, Massachusetts

Urban Harbors Institute Publications

This plan represents another step forward by the City of Gloucester to confront the challenge of declining groundfish stocks and subsequent management measures which have had a profound effect on the fishing industry, the community, and its economy. The plan’s strategies include both short-term recommendations to address the immediate direct impacts on harvesters, fresh fish processors, and associated support businesses, as well as longer-term proposals to bolster and support the industry as it recovers, and proposals to create new economic opportunities built upon Gloucester’s maritime assets, skills, and intellectual capital, and old and new partnerships. The Plan lays out the …

Examples Of Non-Noetherian Domains Inside Power Series Rings, William Heinzer, Christel Rotthaus, Sylvia Wiegand

Nebraska Cooperative Fish and Wildlife Research Unit: Staff Publications

Given a power series ring R∗ over a Noetherian integral domain R and an intermediate field L between R and the total quotient ring of R∗, the integral domain A = L ∩ R∗ often (but not always) inherits nice properties from R∗ such as the Noetherian property. For certain fields L it is possible to approximate A using a localization B of a particular nested union of polynomial rings over R associated to A; if B is Noetherian, then B = A. If B is not Noetherian, we can sometimes identify the prime ideals of B that are not …

Study Of Dockage In Gloucester’S Designated Port Area: Summary, Urban Harbors Institute, University Of Massachusetts Boston

Urban Harbors Institute Publications

The Urban Harbors Institute (UHI), University of Massachusetts Boston assisted the Gloucester Fisheries Commission to conduct a study of commercial dockage in Gloucester Inner Harbor. The study presents a review of existing conditions and expected needs to serve as the basis for the Fisheries Commission to formulate recommendations for ensuring sufficient commercial dockage to support the future fishery. Strategies for the future Gloucester fisheries include measures to increase landings of groundfish, landings of alternative species, and value-added processing.

The Dockage Subcommittee of the Fisheries Commission was instrumental to the study, meeting periodically to guide the process, reviewing progress, and providing …

Magnitude Of The Freshwater Turtle Exports From The Us: Long Term Trends And Early Effects Of Newly Implemented Harvest Management Regimes., Ivana Mali, Michael W. Vandewege, Scott K. Davis, Michael R.J. Forstner

CALS Publications

Unregulated commercial harvest remains a major threat for turtles across the globe. Due to continuing demand from Asian markets, a significant number of turtles are exported from the United States of America (US). Beginning in 2007, several southeastern states in the US implemented restrictions on the commercial harvest of turtles, in order to address the unsustainable take. We have summarized freshwater turtle exports from the US between 2002 and 2012 and demonstrated that the magnitude of turtle exports from the US remained high although the exports decreased throughout the decade. Louisiana and California were the major exporters. The majority of …

Assessing And Managing Freshwater Ecosystems Vulnerable To Environmental Change, David G. Angeler, Craig R. Allen, Hannah E. Birgé, Stina Drakare, Brendan G. Mckie, Richard K. Johnson

Nebraska Cooperative Fish and Wildlife Research Unit: Staff Publications

Freshwater ecosystems are important for global biodiversity and provide essential ecosystem services. There is consensus in the scientific literature that freshwater ecosystems are vulnerable to the impacts of environmental change, which may trigger irreversible regime shifts upon which biodiversity and ecosystem services may be lost. There are profound uncertainties regarding the management and assessment of the vulnerability of freshwater ecosystems to environmental change. Quantitative approaches are needed to reduce this uncertainty. We describe available statistical and modeling approaches along with case studies that demonstrate how resilience theory can be applied to aid decision-making in natural resources management. We highlight especially …

Effects Of River Current Inflow On Dissolved Oxygen And Temperature Of Refuge Zones For Cisco In Lake Bemidji, Bryant C. Swenson

Journal of Earth and Life Science

The objectives of this study were to (1) determine if the inflow current from the Mississippi River affects temperature and dissolved oxygen in Lake Bemidji, (2) determine how the amount of suitable cisco Coregonus artedi habitat changes over the summer in Lake Bemidji, and (3) predict how much cisco habitat would be available under a climate warming scenario. Summer fish kill of cisco occurs in most years on Lake Bemidji resulting from low dissolved oxygen in the hypolimnion and high water temperatures in the epilimnion. Dissolved oxygen and temperature profiles provided evidence to suggest the north basin is more suitable …

Using Posts To An Online Social Network To Assess Fishing Effort, Dustin R. Martin, Christopher J. Chizinski, Kent M. Eskridge, Kevin L. Pope

Nebraska Cooperative Fish and Wildlife Research Unit: Staff Publications

Fisheries management has evolved from reservoir to watershed management, creating a need to simultaneously gather information within and across interacting reservoirs. However, costs to gather information on the fishing effort on multiple reservoirs using traditional creel methodology are often prohibitive. Angler posts about reservoirs online provide a unique medium to test hypotheses on the distribution of fishing pressure. We show that the activity on an online fishing social network is related to fishing effort and can be used to facilitate management goals. We searched the Nebraska Fish and Game Association Fishing Forum for all references from April 2009 to December …

Changing Body Condition In Walleye With Reference To Ideal Sample Size Requirements, Kevin Longtin

Journal of Earth and Life Science

The objective of this study was to determine if walleye Sander vitreus percent dry weight, a measure of condition, differed among summer months of 2014 on Maple Lake, Minnesota. A second objective was to determine if there was a relationship between condition and body temperature, total length, or wet weight. Between three and six walleyes were collected per month by hook and line methods. All fish had internal body temperatures taken at the time of capture and were oven dried in the laboratory at 80 °C in order to measure percent dry weight. There was no relationship between condition and …

The Effects That Liquid And Solid Cattle Manure Have On The Water Quality Of Drainage Ditches In Putnam County, Ohio, Janelle Horstman

Honors Projects

Lake Erie has experienced harmful algal blooms with increased frequency since the mid-1990s due to excess nutrients from Rivers, such as the Maumee River, and largely agricultural watersheds. Nonpoint source pollution from agriculture contributes to eutrophication, algal blooms, and the degradation of water quality. This creates stress on aquatic fauna, reduced aesthetic quality, odor, and limits of the water for usage of drinking, recreation, and industry. This research paper asks what the contributions of having access to manure application records, soil records, and information about antibiotics have on what is known about manure management and antibiotic resistance, which has been …

Defining The Physiochemical, Biological And Habitat Requirements For The Upper Extant Of Oncorhynchus Mykiss Distribution, Emily Powers

Journal of Earth and Life Science

The distribution of rainbow trout is strongly influenced by their habitat. As climatic conditions change, the distribution of rainbow trout populations will change along with them. The objective of this study was to identify the particular habitat parameters that rainbow trout select for in this lotic system and to specifically assess how this relates to the upper extant of their distribution. By assessing the distribution of the upper extant specifically, future research may be conducted to better assess climatic changes on a small and/or large scale basis. A 9,000 m section of the Clearwater River was used as the study …

The Effects Of Angling Pressure On Northern Pike Size Structure, Ryan Carrow

Journal of Earth and Life Science

A number of conditions within a lake system can affect northern pike (Esox lucius) size structure. Of these conditions, the amount of angling pressure may have the biggest effect on the size structure of northern pike in Minnesota lake systems. In this study, five private and five public lakes were chosen near Bemidji, Minnesota. Each lake was fished for twenty angling hours using live northern hog suckers (Hypentelium nigricans) or golden shiners (Notemigonus crysoleucas). Total length (mm) and weight (kg) were measured for each northern pike caught. The number of fish houses that were …

Assessing Resilience In Stressed Watersheds, Kristine T. Nemec, Joana Chan, Christina Hoffman, Trisha L. Spanbauer, Joseph A. Hamm, Craig R. Allen, Trevor Hefley, Donald Pan, Prabhakar Shrestha

Nebraska Cooperative Fish and Wildlife Research Unit: Staff Publications

Although several frameworks for assessing the resilience of social-ecological systems (SESs) have been developed, some practitioners may not have sufficient time and information to conduct extensive resilience assessments. We have presented a simplified approach to resilience assessment that reviews the scientific, historical, and social literature to rate the resilience of an SES with respect to nine resilience properties: ecological variability, diversity, modularity, acknowledgement of slow variables, tight feedbacks, social capital, innovation, overlap in governance, and ecosystem services. We evaluated the effects of two large-scale projects, the construction of a major dam and the implementation of an ecosystem recovery program, on …

Self-Imposed Length Limits In Recreational Fisheries, Christopher J. Chizinski, Dustin R. Martin, Keith L. Hurley, Kevin L. Pope

Nebraska Cooperative Fish and Wildlife Research Unit: Staff Publications

A primary motivating factor on the decision to harvest a fish among consumptive-orientated anglers is the size of the fish. There is likely a cost-benefit trade-off for harvest of individual fish that is size and species dependent, which should produce a logistic-type response of fish fate (release or harvest)as a function of fish size and species. We define the self-imposed length limit as the length at which a captured fish had a 50% probability of being harvested, which was selected because it marks the length of the fish where the probability of harvest becomes greater than the probability of release. …

Panarchy: Theory And Application, Craig R. Allen, David G. Angeler, Ahjond S. Garmestani, Lance H. Gunderson, C. S. Holling

Nebraska Cooperative Fish and Wildlife Research Unit: Staff Publications

The concept of panarchy provides a framework that characterizes complex systems of people and nature as dynamically organized and structured within and across scales of space and time. It has been more than a decade since the introduction of panarchy. Over this period, its invocation in peer-reviewed literature has been steadily increasing, but its use remains primarily descriptive and abstract. Here, we discuss the use of the concept in the literature to date, highlight where the concept may be useful, and discuss limitations to the broader applicability of panarchy theory for research in the ecological and social sciences. Finally, we …

Discontinuities, Cross-Scale Patterns, And The Organization Of Ecosystems, Kirsty L. Nash, Craig R. Allen, David G. Angeler, Chris Barichievy, Tarsha Eason, Ahjond S. Garmestani, Nicholas A. J. Graham, Dean Granholm, Melinda Knutson, R. John Nelson, Magnus Nyström, Craig A. Stow, Shana M. Sundstrom

Nebraska Cooperative Fish and Wildlife Research Unit: Staff Publications

Ecological structures and processes occur at specific spatiotemporal scales, and interactions that occur across multiple scales mediate scale-specific (e.g., individual, community, local, or regional) responses to disturbance. Despite the importance of scale, explicitly incorporating a multi-scale perspective into research and management actions remains a challenge. The discontinuity hypothesis provides a fertile avenue for addressing this problem by linking measureable proxies to inherent scales of structure within ecosystems. Here we outline the conceptual framework underlying discontinuities and review the evidence supporting the discontinuity hypothesis in ecological systems. Next we explore the utility of this approach for understanding cross-scale patterns and the …

Predicted Avian Responses To Bioenergy Development Scenarios In An Intensive Agricultural Landscape, Daniel R. Uden, Craig R. Allen, Rob B. Mitchell, Tim D. Mccoy, Qingfeng Guan

Nebraska Cooperative Fish and Wildlife Research Unit: Staff Publications

Conversion of native prairie to agriculture has increased food and bioenergy production but decreased wildlife habitat. However, enrollment of highly erodible cropland in conservation programs has compensated for some grassland loss. In the future, climate change and production of second-generation perennial biofuel crops could further transform agricultural landscapes and increase or decrease grassland area. Switchgrass (Panicum virgatum) is an alternative biofuel feedstock that may be economically and environmentally superior to maize (Zea mays) grain for ethanol production on marginally productive lands. Switchgrass could benefit farmers economically and increase grassland area, but there is uncertainty as to how conversions between rowcrops, …

Introduction: Social-Ecological Resilience And Law, Ahjond S. Garmestani, Craig R. Allen, Craig Anthony Arnold, Lance H. Gunderson

Nebraska Cooperative Fish and Wildlife Research Unit: Staff Publications

Environmental law is intimately connected to ecological concepts and understanding. The legal instruments, institutions, and administration of law in the United States are predicated on assumptions that nature is globally stable and that the inherent variability in ecological systems is bounded. This current legal framework is based upon an understanding of ecological systems operating near an equilibrium, or if disturbed, moving back toward an equilibrium. Such assumptions make much current environmental law ill-suited for many pressing environmental issues (Ruhl 1999; Garmestani et al. 2009; Craig 2010; Verchick 2010; Benson and Garmestani 2011). Emerging environmental challenges, such as cross-boundary water governance …

Self-Confidence Of Anglers In Identification Of Freshwater Sport Fish, Christopher J . Chizinski, D. R. Martin, K. L. Pope

Nebraska Cooperative Fish and Wildlife Research Unit: Staff Publications

Although several studies have focused on how well anglers identify species using replicas and pictures, there has been no study assessing the confidence that can be placed in angler’s ability to identify recreationally important fish. Understanding factors associated with low self-confidence will be useful in tailoring education programmes to improve self-confidence in identifying common species. The purposes of this assessment were to quantify the confidence of recreational anglers to identify 13 commonly encountered warm water fish species and to relate self-confidence to species availability and angler experience. Significant variation was observed in anglers selfconfidence among species and levels of self-declared …

Toxicity Of Copper Sulfate And Rotenone To Chinese Mystery Snail (Bellamya Chinensis), Danielle M. Haak, Bruce J. Stephen, Robert A. Kill, Nicholas A. Smeenk, Craig R. Allen, Kevin L. Pope

Nebraska Cooperative Fish and Wildlife Research Unit: Staff Publications

The Chinese mystery snail (Bellamya chinensis) is a freshwater snail native to Southeast Asia, Japan, and Russia and is currently classified as an invasive species in at least 27 states in the USA. The species tolerates a wide range of environmental conditions, making management of established populations difficult. We tested the efficacy of two traditional chemical treatments, rotenone and copper sulfate, on the elimination of adult Chinese mystery snails in laboratory experiments. All snails (N=50) survived 72-hour exposure to rotenone-treated lake water, and 96% (N=25) survived 72-hour exposure to pre-determined rotenone concentrations of 0.25, 2.5, and 25.0 mg/L. …

Transdisciplinary Application Of Cross-Scale Resilience, Shana M. Sundstrom, David G. Angeler, Ahjond S. Garmestani, Jorge-H. Garcia, Craig R. Allen

Nebraska Cooperative Fish and Wildlife Research Unit: Staff Publications

The cross-scale resilience model was developed in ecology to explain the emergence of resilience from the distribution of ecological functions within and across scales, and as a tool to assess resilience. We propose that the model and the underlying discontinuity hypothesis are relevant to other complex adaptive systems, and can be used to identify and track changes in system parameters related to resilience. We explain the theory behind the cross-scale resilience model, review the cases where it has been applied to non-ecological systems, and discuss some examples of social-ecological, archaeological/ anthropological, and economic systems where a cross-scale resilience analysis could …