Animal Sciences Commons^™

Climate-Related Declines In Reproductive Output In A High-Elevation Population Of Ground Squirrels, Kayleigh Little

Undergraduate Honors Theses

Beginning in the 1900s, changes in climate have resulted in an increase in global temperatures. This warming has driven behavioral and demographic changes within a multitude of species worldwide. Historically, small mammal populations have responded to changes in temperature by adjusting their geographic ranges. As temperatures rise, high-elevation populations may no longer be able to adjust as they have before. In this study, we evaluated possible effects of climate change on a high-elevation population of Belding’s ground squirrels (Urocitellus beldingi) at Tioga Pass in Northern California. We used local climate data and long-term population data from 1994 to …

Bird Nesting Trends In Massachusetts, Dieter Rodriguez

Biology Student Scholarship

Bird nesting data has long been documented for various species across the United States. While trends between temperature changes or precipitation on bird nesting have been studied for particular species, studies done on the effects of temperature due to climate change on bird nesting on the broader state level are lacking. Using bird nesting data and average annual temperature data for Massachusetts collected over a ten year period, I assessed the effects of temperature changes over time on bird nesting attempts and total eggs laid for all documented species within the state. BIO 340 final project

Effects Of Administration Of A Growth Promoting Implant During The Suckling Phase Or At Weaning On Growth, Reproduction, And Ovarian Development In Replacement Heifers Grazing Native Range, Shelby L. Rosasco, Emily A. Melchior-Tiffany, Cierrah J. Kassetas, Shad H. Cox, Richard L. Dunlap, Jennifer A. Hernandez Gifford, Eric J. Scholljegerdes, Robert A. Cushman, Adam F. Summers

Roman L. Hruska U.S. Meat Animal Research Center: Reports

Management strategies utilized during pre-breeding development of replacement heifers can impact fertility and the ovarian reserve. Angus- Hereford crossbred heifers (n = 233) were utilized over a 3-yr period to determine the effects of administration of a growth promoting implant at either branding or weaning on growth, reproduction, and ovarian development. Heifer calves were randomly assigned to one of three treatments: 1) nonimplanted controls (CON; n = 79), 2) implanted at approximately 2 mo of age (average calf age = 58 d) with Synovex-C (BIMP, n = 82), or 3) implanted at approximately 7 mo of age (average calf …

Interaction Of Replacing Corn Silage With Soyhulls As A Roughage Source With Or Without 3% Added Wheat Straw In The Diet: Impacts On Intake, Digestibility, And Ruminal Fermentation In Steers Fed High-Concentrate Diets, Bryan W. Neville, Wayde J. Pickinpaugh, Lea J. Mittleider, Rebecca L. Moore, Kendall C. Swanson, Joel S. Caton

Roman L. Hruska U.S. Meat Animal Research Center: Reports

Six ruminally cannulated steers [475.0 ± 49.6 kg initial body weight (BW)] were used in a 6 × 3 incomplete Latin square design (six treatments and three periods), to evaluate the impacts replacing of corn silage with pelleted soyhulls as roughage in high-concentrate finishing diets containing 30% modified distillers grains with solubles. Treatments were based on increasing dietary inclusion of soyhulls and consisted of: (1) Control (0), roughage supplied by dietary inclusion of 20% corn silage [dry matter (DM) basis]; (2) 50% replacement of corn silage with soyhulls (50); (3) 100% replacement of corn silage with soyhulls (100), and the …

The Spatial Ecology And Habitat Selection Of A Spotted Turtle (Clemmys Guttata) Population In Southwest Michigan, Michela Coury

Masters Theses

Turtles are arguably the most threatened group of vertebrates on the planet. Anthropogenic influences such as habitat loss and fragmentation, road mortality, subsidized predators, climate change, and illegal collection have contributed to their global decline. Understanding which isolated populations of turtles are viable despite these synergistic threats is crucial for making conservation and management decisions. In Michigan, the spotted turtle (Clemmys guttata) is a threatened species subjected to many negative anthropogenic influences that accelerate its rapid population decline. In order to properly sustain their populations, the goal of my research was to investigate relevant factors that help us …

Winter Use Of Winyah Bay, Sc By The Spiny Dogfish (Squalus Acanthias), And Their Movements South Of Cape Hatteras, Nc, Meredith L. Langford

Electronic Theses and Dissertations

South of Cape Hatteras, NC, little is known about the coastal distribution and movement of the Spiny Dogfish, Squalus acanthias. Between January 2018 and March 2020 this study conducted winter demersal longline sampling in Winyah Bay, SC to investigate habitat use by Spiny Dogfish. In addition to monitoring Winyah Bay use through catch-and-release, 13 individuals were outfitted with implanted Vemco™ acoustic transmitters to monitor large scale movements along the U.S. East Coast. Across three sampling seasons 84 female Spiny Dogfish were captured within lower Winyah Bay. No males were observed over the course of the study. The mean fork length …

Enzootic Trends Of Crassostrea Virginica And Perkinsus Marinus In North Inlet Estuary, South Carolina, Nico Martin D'Amico

Electronic Theses and Dissertations

The Eastern oyster (Crassostrea virginica) co-occurs with the protozoan parasite Perkinsus marinus (the causative agent for "Dermo") in US Atlantic and Gulf of Mexico estuaries. Oyster host functions as an ecological engineer and agent for benthic-pelagic coupling are compromised when P. marinus infections are common in populations (prevalence) and high in individuals (intensity). P. marinus infections in oysters from North Inlet estuary, South Carolina were quantified in relation to shell height (60-76 mm, ≥76 mm), sex (functional female, male, indeterminate), water temperature, and salinity. Three fringing reefs on a longitudinal transect from the inlet mouth into the watershed were sampled …

Evaluating Threats To The Water Quality Of Little Buffalo Creek And Sarver Run Through Water Quality Analysis And Backpack Electrofishing Surveys, Riley Williams

Electronic Theses and Dissertations

Currently, 64.8% and 52.2% of Little Buffalo Creek and Sarver Run stream kilometers are impaired, respectively. Impairment sources to Little Buffalo Creek include agriculture, riparian deforestation, on-site wastewater, and urban runoff. Impairment sources to Sarver Run are unknown. Our goal was to understand sources of impairment through water quality analysis and fish surveys. Water samples were collected monthly and analyzed for cation and anion concentrations. Mass ratio analysis comparing Br/SO₄ and Mg/Li, Ca/Mg and Ca/Sr, Mg/Na and SO₄/Cl, and SO_4/Cl and Mg/Li suggests that mine drainage and conventional oil and gas may be impacting water …

A Review Of Current Methods In Avian Dietary Analysis And Their Integrated Application To Characterize The Trophic Niche Of Louisiana Waterthrush (Parkesia Motacilla)., Brandon Hoenig

Electronic Theses and Dissertations

Characterizing a species’ dietary composition presents an avenue to understand many facets of its ecological niche and can provide essential information for the species’ long-term conservation. To date, the vast majority of diet studies have relied on direct identification of prey during foraging observations or from diet samples to characterize the dietary habits of birds. However, advancements in laboratory-based approaches have revolutionized the field of trophic ecology by allowing researchers to indirectly infer dietary habits with higher resolution across greater time scales. Here, I apply two of these laboratory-based techniques, namely DNA metabarcoding and stable isotope analysis, to characterize the …

Review Of Orthochiroides Kovařík, 1998 With Description Of A New Species (Scorpiones: Buthidae), František Kovařík, Graeme Lowe

Euscorpius

The genus Orthochiroides Kovařík, 1998 is reanalyzed. Revised diagnoses and new illustrations for the genus and all four of its species are presented. A new species, O. somalilandus sp. n. from Somaliland is described and illustrated. Phylogenetic relationships of the genus with several other similar genera of small buthids are inferred from a parsimony analysis of 43 discrete morphological characters. The recent synonymy of Orthochiroides with Orthochirus is refuted and the genus is revalidated.

Assessing The Microbiological Profile Of Raw Goat Milk And Understanding Producer Practices And Perceptions, Jacinda Skye Leopard

Theses and Dissertations

Raw milk sales are legal in 30 states, including Mississippi, where regulations are largely management-based and not food-safety related. The research objectives were to analyze the microbial profile of raw goat milk from Mississippi farms and assess food safety practices and perceptions of dairy goat farmers. Deficiencies and opportunities for improvement in raw goat milk safety were identified. Staphylococcus spp. was present in most (70%) milk samples but aligned with drying-off. E. coli, Enterobacteriaceae, and coliforms were observed in 4, 10, and 12 samples, respectively; no Salmonella spp. or Listeria monocytogenes were detected. The survey highlighted farmers' need for …

The Effect Of Sprinkler Cooling On Water Conservation, House Environment, And Broiler Performance, Jonathan W. Moon

Theses and Dissertations

Maintaining performance and mitigating heat stress of the modern broiler is a challenging task during hot weather conditions. Increased demand of high quality reasonably priced animal protein and predictions of future limited water availability make sustainability and water conservation a worthwhile goal for the poultry industry. The most used form for cooling broilers after wind speed is evaporative cool cell (CC) systems. Though highly effective at cooling the incoming air, they substantially increase the relative humidity inside the house, which hinders the bird’s ability to cool itself through evaporative respiration. Cool cells also utilize mass amounts of water. The objective …

Economic Aspects Of U.S. Catfish Farming: Technological Progress, Cost Of Regulations, And Economic Contribution, Shraddha Gurupad Hegde

Theses and Dissertations

This research provides a comprehensive picture of the economic status of the U.S. catfish industry through investigating several critical economic aspects such as technological progress, functional production relationships in intensive systems, regulatory costs, and economic contribution of the industry. The use of primary data is a unique aspect of this work reflecting the economic realities of catfish farms. Primary data collected through extensive in-person farm surveys covered over two-thirds of the catfish production areas in the U.S. The results of the study provided evidence of intensification in the U.S. catfish industry through increased adoption of two relatively new alternative production …

Assessing Priority Bird Response To Open Pine Management In Eastern Mississippi, Holly Marie Todaro

Theses and Dissertations

Fire suppression, combined with lack of forest thinning and short-rotation, monodominant management, has drastically altered the landscape in the southeastern U.S., leading to the loss of open pine ecosystems and associated avian species. Management of open pine ecosystems is a common practice; yet, there remains uncertainty regarding how vegetation structure impacts priority species. Using empirical data, I assessed changes in species abundance and associated vegetation characteristics before and after management. I also sought to identify vegetation characteristics that influence home range establishment and microhabitat selection of Bachman’s Sparrows. Priority species were negatively associated with hardwood midstory and abundance per site …

Nesting Ecology Of Wood Ducks And Other Cavity-Nesting Ducks In Mississippi, Justin Taylor Gibson

Theses and Dissertations

Man-made nest boxes are surrogate nest sites widely used by waterfowl managers in North America to propagate free-ranging Wood Ducks (Aix sponsa) and other cavity-nesting waterfowl. I monitored 129 and 174 nest boxes in 2020 and 2021, respectively, at Noxubee National Wildlife Refuge and York Woods, Mississippi. I evaluated site-specific biotic and abiotic factors that were potentially influential on nest survival of Wood Ducks and general nesting ecology and apparent nest success of Black-bellied Whistling Ducks (Dendrocygna autumnalis) and Hooded Mergansers (Lophodytes cucullatus). Daily survival rate of Wood Ducks was negatively influenced by increasing encroaching vegetation at Noxubee NWR and …

Investigation Of Dna Variability And Phylogenetic Relationships Of Perlesta (Plecoptera: Perlidae) In Mississippi, James C. Valentine, Mac H. Alford

Master's Theses

The genus Perlesta Banks, 1906 (Plecoptera: Perlidae) consists of 35 species, 33 native to the United States and Canada and two native to China. For over a century these small, brown stonefly adults and freckled yellow nymphs have gone by the name of the type species of the genus, Perlesta placida, but taxonomic work in the genus since 1989 has resulted in the recognition of additional species. These species were mostly recognized and described using morphological characteristics, but two areas that are lacking include (1) linking nymphs to adults and (2) phylogenetic analysis of all species occurring in Mississippi …

Development And Validation Of High-Resolution Melting Assays For The Detection Of Potentially Virulent Strains Of Escherichia Coli O103 And O121, Frank J. Velez, Joseph M. Bosilevac, Sabine Delannoy, Patrick Fach, Ravinder Nagpal, Prashant Singh

Roman L. Hruska U.S. Meat Animal Research Center: Reports

Virulent strains of Shiga toxin-producing Escherichia coli (STEC) serogroups O103 and O121 are considered adulterants in beef. Two high-resolution melting (HRM) real-time PCR assays were standardized for the specific detection and discrimination of potentially virulent and avirulent strains of E. coli O103 and O121. The O103 HRM assay offered the possibility to distinguish clearly STEC O103:H2 from STEC O103:H25. The two standardized assays were extensively validated using 215 pure culture strains, laboratory inoculated food samples, and naturally contaminated beef (n = 84) and pork (n = 84) enrichments collected from the red meat surveillance program. Both HRM assays showed 100% …

Maximization Of Fitness By Phenological And Phenotypic Plasticity In Range Expanding Rabbitfishes (Siganidae), Salvador Zarco-Perello, David Fairclough, Chris Dowling, Joey Dibattista, Rachel Austin, Thomas Wernberg, Brett Taylor

Fisheries Research Articles

1. Global warming is modifying the phenology, life-history traits and biogeography of species around the world. Evidence of these effects have increased over recent decades; however, we still have a poor understanding of the possible outcomes of their interplay across global climatic gradients, hindering our ability to accurately predict the consequences of climate change in populations and ecosystems.
2. We examined the effect that changes in biogeography can have on the life-history traits of two of the most successful range-extending fish species in the world: the tropical rabbitfishes Siganus fuscescens and Siganus rivulatus. Both species have established abundant populations at higher …

Oxen: Status, Uses And Practices In The U.S.A., Encouraging A Historic Tradition To Thrive, Andrew B. Conroy

Faculty Publications

Oxen in the United States of America have played an important role throughout its history. Unlike other countries,oxen were never completely given up for horses, mules, or tractors. Instead, the culture of keeping oxen has been maintained by a small group of teamsters in the North- eastern states collectively called New England. Their continued presence has been largely due to agricultural fairs and exhibitions where they have been used in competition for the last 200 years. Ox teamsters were sur- veyed in 2021via social media using Qualtrics. The 423 ox teamsters responding owned 1791 oxen in 39 states, with the …

Seasonal Variation And Tracking Of Climate Niche Of A Migratory Bird, Javier Gutiérrez Illán, Guiming Wang, D. Tommy King, Fred L. Cunningham

United States Department of Agriculture Wildlife Services: Staff Publications

Migratory birds inhabit different areas during breeding and non-breeding seasons. Depending on the time of the year, they may utilize different resources available in seasonal habitats, but also are subjected to changing climate regimes during their annual life cycle. Migratory birds may adopt ecological niche tracking to cope with different environmental conditions between breeding and non-breeding grounds. The American White Pelican (Pelecanus erythrorhynchos, hereafter ‘AWPE’) is a short-distance migrant between the Gulf of Mexico coastal regions (nonbreeding grounds) and the Northern Great Plains (breeding grounds) of Canada and the US. The American White Pelican is a piscivore, feeding …

Reconstructing The Ecological Relationships Of Late Cretaceous Antarctic Dinosaurs And How Functional Tooth Morphology Influenced These Relationships, Ian D. Broxson

2022 Symposium

The Sandwich Bluff Formation of the James Ross Basin of Antarctica has recently yielded a group of five late Cretaceous dinosaurs that lived contemporaneously with each other, a first for Antarctica. These five dinosaurs include fragmentary remains of two differently sized elasmarian ornithopods, a possible megaraptor, a hadrosaur, and a nodosaur. In this study we will construct a model of the ecological relationships of late Cretaceous Antarctica. Additionally, we will look at what specific factors allowed this group of four herbivores and a carnivore to coexist in a restricted locality and what niches were filled by each species. Methods to …

Cache Like A Squirrel: Effects Of Long Term Storage On Crude Fat Content Of Q. Palustris And Q. Alba Acorns, Cheyenne T. Villarosa, Sabrina Volponi, Timothy A. Kreps, Tamara L. Johnstone-Yellin

Honors Projects

Quercus palustris and Quercus alba acorns are a primary component in many wild animal diets, particularly during preparation for winter. As such, they provide a natural, easily gathered food staple for wildlife recovering in rehabilitation facilities. We examined whether collection and temperature-controlled storage methods differentially affect the nutritional deterioration of crude fat in acorns to assess both caching by wildlife and to provide recommendations to rehabilitators. We collected acorns from Q. palustris in 2020 (N=8) and Q. alba in 2017 (N=11) in Bridgewater, VA, USA. Acorns were dried for 7 days using a fan or for 30 minutes in an …

Trophish: Building A Global Database Of Freshwater Trophic Interactions, Jacob M. Ridgway

Honors Thesis

Freshwater management and research frequently use the trophic data of freshwater fishes. Despite this fact, it is difficult to perform a simple search of dietary information for any one fish species. FishBase represents, to our knowledge, the largest compilation of freshwater dietary information to date. However, it excludes a large portion of the ecological literature due to its development taking place prior to the creation of most modern scientific search engines. Our project (TroPhish) is building upon FishBase by digitizing approximately 130 years of data from the fish predation literature. Data from the primary and grey (e.g. theses, dissertations, reports) …

Detection, Occupancy, Abundance, And Mercury Accumulation Of The Alligator Snapping Turtle (Macrochelys Temminckii) In Texas, David Rosenbaum

Electronic Theses and Dissertations

Land use practices and physical alterations of ecosystems result in habitat loss and fragmentation, while chemical alterations, such as pollutant input, reduce habitat quality and health of exposed organisms. Here, I investigated the effects of watershed- and local-scale environmental variables on the occupancy, abundance, and mercury accumulation of a threatened aquatic species (Macrochelys temminckii, i.e., alligator snapping turtle) within the southwestern periphery of its distribution. Hierarchical modeling suggested the distribution of the species is more affected by watershed-scale land-cover than local habitat, and provided a baseline estimate of average species abundance across its range in eastern Texas. Abundance …

Using Color To Identify Neotropical Parrots In Early Modern European Art: Recognizing Limitations And Avoiding Pitfalls Through Integration Of Scientific And Artistic Knowledge, Deniz Martinez

The Confluence

Colorful Neotropical parrots were amongst the first and most frequent exotic animals to be imported by Europeans from the “New World” of the Americas, becoming key figures in what would become known as the Columbian exchange. There has been an ongoing effort to locate and identify images of Neotropical parrots in the visual record of early modern Europe, with the classification of many remaining unsettled in the scholarship. Proper identification of these images can be valuable data for reconstructing historical biogeography and transatlantic trade; especially compelling is the potential of certain “mystery parrots” in the visual record to support the …

A Genetic Evaluation Of The Impacts Of Dams On Sauger Movement Patterns In The Arkansas River, Emily R. Jonagan

ATU Theses and Dissertations 2021 - Present

Decreased habitat connectivity as a result of damming can lead to genetic isolation in fish communities, especially in highly migratory species. Sauger Sander canadensis is a migratory freshwater species native to the Arkansas River. Sauger are highly sought after by anglers during their annual spawning migration in late winter. In order to investigate the impacts Arkansas River dams on Sauger populations, fin clips were collected in the winters of 2019, 2020, and 2021 below eight dams in the McClellan-Kerr Arkansas River Navigational System (MKARNS). Fin clips were also collected from two reservoirs in Kansas to serve as distinct reference populations. …

Striped Blenny (Chasmodes Bosquianus) Behavior And Shelter Use In A Southeastern Salt Marsh Tidal Creek, Brooklyn Johnson, Juliana Harding

Honors Theses

Temperate estuaries are important habitats for resident species and maturing juvenile transient fishes. The North Inlet estuary, SC resident fish fauna includes the Striped Blenny (Chasmodes bosquianus) and Crested Blenny (Hypleurochilus geminatus). Individual blenny males occupy habitat shelters year-round. During breeding season, blenny males attract mates to nest and protect developing embryos within the nest. Salinity requirements establish blenny spatial distribution in the estuary. Seasonal spawning activity by these temperate blenny species is related to water temperature and seasonal productivity patterns. Blenny nest site occupancy patterns relative to the lunar cycle, water depth, and salinity were …

Individual Beef Cattle Identification Using Muzzle Images And Deep Learning Techniques, Guoming Li, Galen E. Erickson, Yijie Xiong

Department of Animal Science: Faculty Publications

The ability to identify individual animals has gained great interest in beef feedlots to allow for animal tracking and all applications for precision management of individuals. This study assessed the feasibility and performance of a total of 59 deep learning models in identifying individual cattle with muzzle images. The best identification accuracy was 98.7%, and the fastest processing speed was 28.3 ms/image. A dataset containing 268 US feedlot cattle and 4923 muzzle images was published along with this article. This study demonstrates the great potential of using deep learning techniques to identify individual cattle using muzzle images and to support …

A Multi-Species Study On Several Types Of Visitor Effects On The Behavior And Physiology Of Animals At The Oregon Zoo, Laurel Berylline Fink

Dissertations and Theses

The visitor effect on zoo animals is one of the expanding research topics in zoo animal research. As visitors are a mandatory feature of zoological institutions, understanding their effects on zoo animals is imperative for maximizing zoo animal welfare. Zoo animals are subject to many anthropogenic influences: visual, olfactory, and audible, for example. This dissertation investigates several of the effects of visitor presence and its relative influence on six mammalian species: cheetahs (Acinonyx jubatus), African painted dogs (Lycaon pictus), Asian elephants (Elephas maximus indicus & Elephas maximus borneensis), giraffes (Giraffa camelopardalis reticulata & …

Impacts Of Added Roughage On Growth Performance, Digestibility, Ruminal Fermentation, And Ruminal Ph Of Feedlot Steers Fed Wheat-Based Feedlot Diets Containing 30% Modified Distillers Grains With Solubles, Wayde J. Pickinpaugh, Bryan W. Neville, Rebecca L. Moore, Joel S. Caton

Roman L. Hruska U.S. Meat Animal Research Center: Reports

Two experiments were conducted to evaluate the inclusion rate roughage in wheat-based diets containing modified distillers grains with solubles (MDGS) on feedlot performance (Feedlot Experiment), as well as digestibility, ruminal pH, and ruminal fermentation characteristics (Digestibility Experiment). The feedlot experiment utilized 72 Angus steers (392 ± 46.3 kg initial body weight) which were randomly assigned to 1 of 12 pens, 3 pens per treatment, to evaluate feedlot performance and carcass characteristics. Dietary treatments were 1) control; 10% roughage, 2) 12% roughage, 3) 14% roughage, and 4) 16% roughage. The digestibility experiment used four ruminally and duodenally cannulated steers (393 ± …