Animal Sciences Commons^™

A Macro Analysis Of Illegal Hunting And Fishing Across Texas Counties: Using An Economic Structural Approach, Leo J. Genco Jr.

USF Tampa Graduate Theses and Dissertations

The purpose of this disseration is to examine the distribution of illegal hunting and fishing violations across Texas counties in respect to the economic structure. Illegal hunting plays a part in the extraction of resources that are overly withdrawn, and criminologists have ignored this form of deviancy that has large ramifications for the environment. To view this criminal phenomenon, the study uses the Treadmill of Production theory to determine economic structural factors and whether those factors explain the distribution of illegal hunting and fishing. Using regression analyses and SatScan, the findings suggested that while there are significant factors related to …

An Investigation Of Habitat Suitability Factors And Their Interactions For Predicting Gopher Tortoise Habitat, Abigail V. Lavallin

USF Tampa Graduate Theses and Dissertations

This thesis evaluates the interaction between four habitat factors vital to the gopher tortoise in Florida. Federally and state listed as threatened throughout its entire range, the gopher tortoise is vital to protect, not only for itself individually but its burrows provide an essential habitat to over 300 species making it a key stone species within its environment. Historic habitat modeling methods are reviewed for the gopher tortoise to highlight the gap on this topic. This research expanded on the methods utilized by Baskaran et al. (2006) evaluating the soil, landcover, percentage of canopy cover and the depth to water …

Extending Spectrophotometric Pht Measurements In Coastal And Estuarine Environments, Nora Katherine Douglas

USF Tampa Graduate Theses and Dissertations

Nearshore and estuarine environments play a vital role in the cycling of carbon, but the effects of ocean acidification in estuarine waters have not been studied as extensively as in the open ocean. One reason for this is the limitation of pH measurement capabilities in low-salinity waters. Typically, pH in these environments has been measured using potentiometric methods that are subject to uncertainties on the order of 0.01. Spectrophotometric methods for measuring pHT offer precision and accuracy superior to those of potentiometric methods. However, previous characterizations for purified sulfonephthalein indicators, used for marine spectrophotometric measurements, are not applicable to estuarine …

The Ecology Of Antibiotic Resistance: Sources And Persistence Of Vancomycin-Resistant Enterococci And Antibiotic Resistant Genes In Aquatic Environments, Suzanne M. Young

USF Tampa Graduate Theses and Dissertations

The growing crisis of antibiotic resistance is a major threat to ecosystems and human health. Infections caused by known and emerging antibiotic resistant pathogens are on the rise globally, with approximately 700,000 deaths per year caused by antibiotic resistant bacteria (1). In the United States, infections from antibiotic resistant bacteria cause more than 2 million illnesses and 23,000 deaths (2). Antibiotic resistant bacteria and antibiotic resistance genes are released into aquatic ecosystems through hospital waste, residential sewer lines and animal agricultural waste streams. Animal agriculture accounts for approximately 70% of antibiotic use in the United States (3). In agricultural ecosystems, …

Effects Of An Early Life Immune Challenge On Body Growth, Personality, Mating Behaviors, And Brain Development Of Zebra Finches (Taeniopygia Guttata), Ahmet Kerim Uysal

USF Tampa Graduate Theses and Dissertations

The developmental stress hypothesis predicts that an aversive condition, such as decreased food intake, predation, and social isolation, in the early developmental stage could have long term effects on behaviors and brain development of an animal. In nature, bird nestlings are susceptible to various factors, such as malnutrition, infections, and parasites. Effects of early life stress on adulthood have been extensively studied with some stressors including malnutrition. However, immune challenges as an early life stressor and their long-term programming effects on adult behaviors are yet to be studied in detail. The goal of the current study was to investigate changes …

Experimental Evaluation Of Cooling Effectiveness And Water Conservation In A Poultry House Using Flow Blurring® Atomizers, Rafael M. Rodriguez

USF Tampa Graduate Theses and Dissertations

Increases in population as well as economic improvements in developing countries are generating a larger demand for animal protein products. Current animal growth processes inherently, require the use of water in many forms throughout the growth cycle. Water is the most important natural resource on earth to sustain life, and in many developing countries is a scarce resource that must be used wisely. Studies have revealed that poultry growth can take place with less water consumption, when compared with other sources of animal protein (e.g., cattle, pork). In this research, an evaporative Flow Blurring^® cooling system was considered as …

Resource Use Overlap In A Native Grouper And Invasive Lionfish, Joseph Schmidt Curtis

USF Tampa Graduate Theses and Dissertations

Invasive species can severely disrupt biological communities through their interactions with native organisms, yet little is known about the response of marine predators to the establishment of a competitive invasive fish. In the western Atlantic, invasive Indo-Pacific lionfishes (Pterois spp.) may represent a novel competitor to several commercially and ecologically important native species. However, there is a scarcity of empirical research documenting comparative resource use of cohabitant lionfish and native fishes, as well the physiological consequences that may result from interspecific interactions with the invasive species. For this thesis, I conducted two studies designed to elucidate the strength …

Teaching Culinary Skills Using Video Modeling To Individuals With Traumatic Brain Injury, Sarah Castro

USF Tampa Graduate Theses and Dissertations

Individuals with Traumatic Brain Injury (TBI) often need to be taught independent living skills in order to reintegrate into community settings. This study examined the use of video modeling to teach culinary skills to three individuals with TBI. Video modeling is easily accessible, inexpensive, and not reliant on an additional person to directly teach skills. For all three participants, video modeling resulted in increases in cooking skills using a task analysis created for each food item prepared. For one participant, the skills maintained over two weeks and generalized to a novel food. For another participant video modeling was insufficient in …

Whiting Events Off Southwest Florida: Remote Sensing And Field Observations, Jacqueline Long

USF Tampa Graduate Theses and Dissertations

“Whiting” is a term used to describe a sharply defined patch of water that contains high levels of suspended, fine-grained calcium carbonate (CaCO₃). These features are named for their bright (at times white) appearance when compared to surrounding waters, and have been found to occur globally, persisting for multiple consecutive days. Although whitings have been widely studied using chemical, biological, geological, and physical techniques, there has been little effort to document their spatio-temporal distributions in a systematic way, not to mention the lack of consensus on what generates whitings and allows them to persist for days to weeks …

The Effect Of Home Range Estimation Techniques On Habitat Use Analysis, Brendon Quinton

USF Tampa Graduate Theses and Dissertations

The term “home range” refers to the area in which an animal spends most of its time during everyday activities. This study examined the effects of four different home range estimation techniques on the proportions of habitats located therein. The study utilized a point dataset collected for twenty individual Florida Black Bears (Ursus americanus floridanus), occurring in five different areas throughout the state of Florida. Each dataset was used to create home ranges using the following techniques: (1) Minimum Convex Polygon, (2) Kernel Density Estimation, (3) Characteristic Hull Polygon, and (4) Time-Geographic Density Estimation, a new home range …

Diversity And Distribution Of Diatom Endosymbionts In Amphistegina Spp. (Foraminifera) Based On Molecular And Morphological Techniques, Kwasi H. Barnes

USF Tampa Graduate Theses and Dissertations

Diatoms associated with foraminifers of the genus Amphistegina were assessed using a combination of morphological and molecular techniques. These included: 1) microscopic identification of diatoms cultured from the host, 2) sequencing of portions of the small subunit of the ribosomal RNA gene (18S) and the large subunit of the ribulose-1,5-bisphosphate carboxylase/oxygenase [i.e., RubisCO] gene (rbcL) from DNA extracted directly from the Amphistegina hosts and also from diatoms cultured from these hosts, and 3) denaturing gradient gel electrophoresis (DGGE) profiles of rbcL and internal transcribed spacer 1 (ITS1) PCR amplicons from DNA extracted directly from …

Acropora Habitat Evaluation And Restoration Site Selection Using A Species Distribution Modeling Approach, Katherine Wirt Ames

USF Tampa Graduate Theses and Dissertations

While populations of nearly all stony coral species along the Florida reef tract have exhibited decline, the most notable decline has occurred in the once-dominant acroporid species (Acropora cervicornis, A. palmata). Both species were listed in 2006 as threatened under the Endangered Species Act. This listing, combined with their continued decline, has resulted in large-scale restoration efforts throughout Florida and the Western Caribbean. Currently, there is little to no information regarding spatial prioritization of sites for these restoration efforts. The primary objective of this dissertation was to utilize species distribution modeling, informed by existing data from the …

North American River Otter (Lontra Canadensis) Presence And Habitat Analysis In Florida As Compared To Historical Data, Samantha Wilber

USF Tampa Graduate Theses and Dissertations

North American river otters are considered common in the state of Florida, but their populations have not been studied since the 1980’s. Since that time, Florida’s human population has more than doubled, and many natural areas of Florida have been developed. The aim of this study was to determine the presence or absence of river otters at locations in Florida which they historically inhabited. Forty-six sample sites where otters were historically found were obtained from the Florida Museum of Natural History Mammals Master Database (FMNH MMD). These sites were condensed to two focus areas, in and around Alachua and Collier …

The Development Of A Fluorescence-Based Reverse Flow Injection Analysis (Rfia) Method For Quantifying Ammonium At Nanomolar Concentrations In Oligotrophic Seawater, William Abbott

USF Tampa Graduate Theses and Dissertations

The goal of this thesis was to adopt a reverse flow injection analysis (rFIA) technique to the fluorometric analysis of the reaction o-phthaldialdehyde (OPA) with ammonium, allowing accurate measurements of ammonium concentrations lower than the detection limit of the widely used indophenol blue (IPB) colorimetric method while accounting for the background fluorescence of seawater. Ammonium is considered an essential nutrient for primary productivity, especially in the nutrient depleted surface ocean where as the most reduced form of dissolved inorganic nitrogen, it is readily assimilated via metabolic pathways. Challenges in the quantification of ammonium require more sensitive analytical techniques for …

Vulnerability Of Larval Fish Populations To Oil Well Blowouts In The Northern Gulf Of Mexico, Emily Chancellor

USF Tampa Graduate Theses and Dissertations

On April 20th, 2010, a fire broke out on the Deepwater Horizon (DWH) offshore oil drilling rig on the Macondo prospect located off the coast of the Gulf of Mexico (GOM). This fire and resulting explosions resulted in the sinking of the Deepwater Horizon rig and the largest marine oil spill in history. An estimated 4.9 million (+/- 10%) barrels were released into the Gulf of Mexico over the ensuing 87 days. Many economically important fish species spawn in northern Gulf of Mexico waters; the spawning seasons and pelagic larval phase of many of these species occur within the temporal …

Variability In The Spatial And Temporal Patterns Of Larval Scombrid Abundance In The Gulf Of Mexico, Sennai Y. Habtes

USF Tampa Graduate Theses and Dissertations

Accurate fishery-independent methods for assessing the abundance of marine fish stocks are important tools for proper pelagic fisheries management. The review and improvement of standardized sampling methods used in fisheries-independent sampling, and the establishment of improved models of abundance and population dynamics utilizing novel statistical techniques for fisheries management will further improve our understanding of the way in which marine fish stocks vary spatially and temporally. One of the most important and longest running surveys of fisheries-independent data in the Southeastern United States is the spring ichthyoplankton survey conducted through the Southeast Area Mapping and Assessment Program (SEAMAP).

These surveys …

Use Of A Towed Camera System For Estimating Reef Fish Populations Densities On The West Florida Shelf, Sarah Elizabeth Grasty

USF Tampa Graduate Theses and Dissertations

Reef fish species tend to reside over high relief habitat which makes them difficult to sample with traditional gears such as nets and trawls. Therefore, implementing and understanding the strengths and weaknesses of new approaches which incorporate acoustic and optical methods has become a priority for reef fish stock assessment. Beginning in June of 2013, a towed camera system known as the Camera-Based Assessment Survey System (C-BASS) has been used to visualize over 500 kilometers of transect and record more than 80 hours of video over several habitats in the Gulf of Mexico. Surveys have been completed on the West …

Ontogenetic Diet Shifts And Prey Preference Of A Generalist Predatory Fish, Brittany Jalene Scharf

USF Tampa Graduate Theses and Dissertations

Marine ecosystems are highly dynamic and contain a diverse faunal assemblage that are subject to various natural and anthropogenic variability. Globally, seagrass ecosystems are located adjacent to coastal areas that are heavily impacted by human development and urbanization potentially altering the community structure within these ecosystem. Complex food webs connect many components of these systems, often in unexpected ways, and are ultimately based on one of two pathways: benthic (i.e., seagrass, epiphytes, microalgae, detritus) and planktonic (i.e., phytoplankton). Understanding the pathway which the food web is based gives further insight regarding the biological balance of the ecosystem; thus it is …

Are Gopher Tortosies (Gopherus Polyphemus Daudin) Comapatible With Cows?, Thomas William Hentges

USF Tampa Graduate Theses and Dissertations

Many Gopher Tortoise populations are in steep decline throughout Florida, and various measures have been attempted to curb the trend. One such measure is to relocate tortoises to protected recipient sites on private lands. The majority of private lands in Florida are used for cattle, however, production and the effect of cattle production on tortoises is not known. Here, I tested six parameters of tortoise behavior by monitoring 1403 gopher tortoises released at the Barthle Brothers Ranch, Pasco County Florida, between August 2009 and December 2012. The parameters tested were (1) burrow density, (2) burrow spacing, (3) burrow relocation, (4) …

Using Otolith Elemental Composition To Track The Habitat Use, Movements, And Life History Patterns Of Common Snook (Centropomus Undecimalis) And Red Drum (Sciaenops Ocellatus) In The Tampa Bay Estuary, Holly Jacqueline Rolls

USF Tampa Graduate Theses and Dissertations

Knowledge of fish habitat use and connectivity is critical for understanding the structure and dynamics of fish populations and, therefore, necessary for the implementation of successful fisheries management strategies. Tagging is an effective means of providing such information, and the elemental composition contained within fish otoliths is increasingly being used as a natural tag. The chemical composition of otoliths reflects the incorporation of elements from different water bodies and can thus be used to understand the habitat use, movements, and life history patterns of fishes. To assess the applicability of otolith elemental composition as a tagging technique within the Tampa …

Developing An In-Season Predictor Of Commercial Landings For Quota Monitoring In The U.S. Virgin Islands, Mary Janine Vara

USF Tampa Graduate Theses and Dissertations

The lack of timely reporting of commercial fisheries landings interferes with effective management of fisheries in United States Virgin Islands (USVI). Federal law requires that landings be limited to prevent annual catch limits (ACLs) from being exceeded. Previous attempts to predict total landings have used historic data from prior fishing seasons to predict future landings rather than leveraging available in-season data to provide a more real-time prediction of landings. This study presents an in-season model that predicts total landings using partial reports from the current fishing year. This estimate of total landings, including error bounds around that estimate, can then …

Karenia Brevis Harmful Algal Blooms: Their Role In Structuring The Organismal Community On The West Florida Shelf, Alisha Marie Gray

USF Tampa Graduate Theses and Dissertations

Karenia brevis dinoflagellate blooms off the west coast of Florida can create devastating effects on marine communities when they release a neurotoxin known as a brevetoxin. These blooms, informally referred to as red tides, can cause massive fish kills, necessitate closures of shellfish fisheries, and can even leave lingering toxins that impact shelf communities long after the bloom has dissipated. As a result, much effort has been put into studying K. brevis bloom initiation and dynamics. However, how K. brevis blooms impact Florida's fisheries is not fully understood because the relationship between K. brevis cell counts and fish mortality is …

Testing The Feasibility Of Bioacoustic Localization In Urban Environments, Blaire O'Neal

USF Tampa Graduate Theses and Dissertations

Bioacoustics is a relatively new field of research focused on studying the acoustic signals of vocal animal species. The field has been a topic of interest for many years due its passive approach and avoidance of species-level limitations, such as tracking rare or nocturnal species. It has been used to locate birds in terrestrial environments; however, localization in urban environments remains unstudied. This research aims to fill the gap by attempting to estimate the location of 30 discrete calls in eight unique, urban environments. Sites represented two distinct traffic scenarios: moderate traffic and high traffic. Three system arrays of three …

Evaluation Of A Pilot Land-Based Marine Integrated Aquaculture System, Suzanne Boxman

USF Tampa Graduate Theses and Dissertations

Recirculating aquaculture systems (RAS) produce aquaculture products on land with minimal discharge of waste products and minimal water loss. High costs associated with waste treatment for RAS have triggered the growth of integrated aquaculture systems (IAS) which incorporate macrophytes (aquatic plants) into the treatment train. The objective of this research was to examine a pilot scale inland marine IAS with three different methods for solids treatment: a sand filter followed by a plant bed, only a plant bed, and geotextile bags. Florida Pompano (Trachinotus carolinus) were grown along with Smooth Cordgrass (Spartina alterniflora), Black Needle Rush …

Relative Survival Of Gags Mycteroperca Microlepis Released Within A Recreational Hook-And-Line Fishery: Application Of The Cox Regression Model To Control For Heterogeneity In A Large-Scale Mark-Recapture Study, Beverly J. Sauls

USF Tampa Graduate Theses and Dissertations

The objectives of this study were to measure injuries and impairments directly observed from gags Mycteroperca microlepis caught and released within a large-scale recreational fishery, develop methods that may be used to rapidly assess the condition of reef fish discards, and estimate the total portion of discards in the fishery that suffer latent mortality. Fishery observers were placed on for-hire charter and headboat vessels operating in the Gulf of Mexico from June 2009 through December 2012 to directly observe reef fishes as they were caught by recreational anglers fishing with hook-and-line gear. Fish that were not retained by anglers were …

Molecular Technologies In The Science And Policy Of Florida Largemouth Bass Micropterus Floridanus Management In Florida, Josh Sakmar

USF Tampa Graduate Theses and Dissertations

Advances in molecular technologies have provided conservation biologist with the opportunity to quantify the genetic structure of a population and, in turn develop management guidelines and policies aimed at preserving the genetic diversity of fish stocks challenged by human activities. This thesis examines the status of genetics as applied to the management of freshwater fisheries by state natural resource agencies with a purpose of understanding the keys to a successful genetics program. An online survey was used to investigate the breadth of molecular marker application to freshwater fisheries management by state natural resource departments. Seven questions were posed to 50 …

Investigation Of Condition Effects On Batch Fecundity Of The Common Snook, Centropomus Undecimalis, In Tampa Bay, Florida, Catherine Michelle Bruger Hayslip

USF Tampa Graduate Theses and Dissertations

Common snook, Centropomus undecimalis, is a popular game fish species that occurs throughout central and southern Florida, yet many questions remain unanswered regarding their reproductive strategies, including estimates of fecundity with relation to size, age, and condition of the female. These relationships are critical to improving stock assessments and fundamental to estimating spawning potential ratio, the measure by which snook are managed. Spawning snook were collected from a known spawning site, Rattlesnake Key, Tampa Bay, Florida, during three consecutive spawning seasons (2009-2011) and batch fecundity for snook was reported for the first time. Of the 43 females suitable for fecundity …

A Study Of The Eastern Oyster, Crassostrea Virginica, In Tampa Bay: Effects Of Perkinsus Marinus On Reproduction And Condition, Bridgit Melora Mccrickard

USF Tampa Graduate Theses and Dissertations

Abstract

Five sites in Tampa Bay, Florida, were sampled monthly from February 2006 to January 2007. These sites were located at the mouth of the Alafia River, in an inlet of Cross Bayou, on the easement of Gandy Bridge, near mangrove in Manatee County, and an inlet of Salt Creek, off Bayboro Harbor. Standard methods were used to determine shell height and Condition Index (CI). Intensity and prevalence of Perkinsus marinus were analyzed using Ray's Thioglycollate medium test, while Haplosporidium nelsoni was studied by histological examination. Histological methods were also used to determine sex ratios, reproductive phases, and egg diameters. …

Fishermen, Politics, And Participation: An Ethnographic Examination Of Commercial Fisheries Management In St. Croix, U.S. Virgin Islands, Cynthia Grace-Mccaskey

USF Tampa Graduate Theses and Dissertations

Currently, there is widespread debate regarding the overall status of the world's fisheries, with some researchers projecting their total collapse in only a few decades, and others concluding the situation is not quite as bleak. Additional debates include what strategies should be used to manage fisheries at various scales, and further research is needed to determine which strategies are most appropriate for use in particular situations and locales, as context is critical.

Recently, prominent common pool resources scholars have expressed the need for ethnographic approaches to studying resource management institutions in order to move beyond the current focus of simply …

A Spatially Explicit Agent Based Model Of Muscovy Duck Home Range Behavior, James Howard Anderson

USF Tampa Graduate Theses and Dissertations

ABSTRACT

Research in GIScience has identified agent-based simulation methodologies as effective in the study of complex adaptive spatial systems (CASS). CASS are characterized by the emergent nature of their spatial expressions and by the changing relationships between their constituent variables and how those variables act on the system's spatial expression over time. Here, emergence refers to a CASS property where small-scale, individual action results in macroscopic or system-level patterns over time. This research develops and executes a spatially-explicit agent based model of Muscovy Duck home range behavior. Muscovy duck home range behavior is regarded as a complex adaptive spatial system …