Animal Sciences Commons^™

Developing Novel Remote Camera Approaches To Assess And Monitor The Population Status Of Australian Sea Lions, Mathew Hourston, Daniela Waltrick, Stuart Blight, Ainslie Denham, Alex Hesp, Steve Taylor

Fisheries Research Reports

This project trialled the use of remote cameras to monitor the relative abundance of Australian sea lions (ASLs, Neophoca cinerea) at three Western Australian (WA) breeding colonies. The research was undertaken by the Department of Primary Industries and Regional Development (DPIRD) to assess whether the analysis of camera footage could be used to estimate ASL relative abundance, providing an alternative to the traditional “boots on the ground” approach (hereon in “BoG”) of visiting colonies to count animals. This report outlines the strengths and limitations of this novel approach rather than providing an update on the population status of ASLs. …

Managing Non-Mulesed Sheep, Department Of Primary Industries And Regional Development, Western Australia

Animal production and livestock factsheets

The Department of Primary Industries and Regional Development (DPIRD) has been involved in a variety of research projects to help producers manage non mulesed sheep. Research has shown that it is possible to successfully manage non-mulesed sheep with little extra time or cost.

Widespread Exposure Of Marine Parks, Whales, And Whale Sharks To Shipping, Vincent Raoult, Vanessa Pirotta, Troy F. Gaston, Brad Norman, Samanatha Reynolds, Tim M. Smith, Mike Double, Jason How, Matt W. Hayward

Fisheries Research Articles

Context: Shipping impacts are a major environmental concern that can affect the behaviour and health of marine mammals and fishes. The potential impacts of shipping within marine parks is rarely considered during the planning process.

Aims: We assessed the areal disturbance footprint of shipping around Australia, its overlap with marine parks, and known locations of megafauna, so as to identify areas of concern that warrant further investigation.

Methods: Automatic Identification System (AIS) shipping data from 2018 to 2021 were interpreted through a kernel-density distribution and compared with satellite data from ∼200 individuals of megafauna amalgamated from 2003 to 2018, and …

Ecological Risk Assessment For The Western Rock Lobster Resource - Background Information, Jason How, Emma-Jade Tuffley, Rebecca Oliver, Scott Evans, Mathew Hourston, Simon De Lestang

Fisheries Research Reports

In April 2022, the Department of Primary Industries and Regional Development (DPIRD, Department) convened an ecological risk assessment (ERA) of the fisheries that access the Western Rock Lobster Resource (Resource). ERAs are conducted by the Department as part of its Ecosystem Based Fisheries Management (EBFM) framework.

This report provides an overview of the Western Australian (WA) fisheries that access the Resource to support the ERA risk scoring process. The ERA considered the potential ecological impacts of the harvest of the Resource by all sectors, including the commercial fisheries; West Coast Rock Lobster Managed Fishery (WCRLMF) and South Coast Crustacean Managed …

Smart Drumlines Ineffective In Catching White Sharks In The High Energy Capes Region Of Western Australia: Acoustic Detections Confirm That Sharks Are Not Always Amenable To Capture, Stephen M. Taylor, Jason How, Michael J. Travers, Stephen J. Newman, Silas Mountford, Daniela Waltrick, Christopher E. Dowling, Ainslie M. Denham, Daniel J. Gaughan

Fisheries Research Articles

The management of human-shark interactions can benefit from the implementation of effective shark hazard mitigation measures. A Shark-Management-Alert-in-Real-Time (SMART) drumline trial in the Capes region of Western Australia was instigated after several serious incidents involving surfers and white sharks (Carcharodon carcharias). The project aimed to determine whether white sharks (target species), which were relocated after capture, remained offshore using satellite and acoustic tagging. Over a 27-month period, 352 fish were caught, 55% of which comprised tiger sharks (Galeocerdo cuvier). Ninety-one percent of animals were released alive in good condition. Only two white sharks were caught; both were relocated ≥ 1 …

Boat-Based Recreational Fishing In Western Australia 2020/21, Karina L. Ryan, Eva Km Lai Dpird, Claire B. Smallwood

Fisheries Research Reports

The integrated surveys of boat-based recreational fishing include three components: (i) off-site Phone Surveys (encompassing an initial Screening Survey, a longitudinal Phone-Diary Survey, and Post-Enumeration Surveys); (ii) on-site Boat Ramp Surveys; and (iii) Remote Camera Surveys. The main data collection period from September 2020 to August 2021 (inclusive) provides comparisons with previous surveys in 2017/18 (September 2017 to August 2018), 2015/16 (September 2015 to August 2016), 2013/14 (May 2013 to April 2014) and 2011/12 (March 2011 to February 2012). A total of 3,044 fishers completed the Phone-Diary Survey with 206,230 individual fish (including invertebrates) caught (kept or released) by fishers …

Recreational Fishing For Western Rock Lobster: Estimates Of Participation, Effort And Catch In 2021/22, Claire B. Smallwood, Karina L. Ryan, Alissa C. Tate, Lucy J. Rudd

Fisheries Research Reports

The Western Rock Lobster (WRL) (Panulirus cygnus) is the most commonly caught Rock Lobster (RL) species in Western Australia. Catches from the commercial and recreational sectors are required to determine and monitor Total Allowable Commercial Catch (TACC), Total Allowable Recreational Catch (TARC) and proportion of Allowable Harvest Level (AHL) achieved. The TARC is set at 5% of the AHL and evaluated in the harvest strategy based on a 5-year average. Since 2018/19, data for the recreational sector have been collected using phone- recall surveys to provide estimates of participation, fishing effort and retained catch (by numbers) from recreational fishers who …

Sheep And Goat Industry Funding Scheme Annual Report 2021/2022, Department Of Primary Industries And Regional Development, Western Australia, Sheep And Goat Industry Funding Scheme

Agriculture reports

No abstract provided.

Shore-Based Recreational Fishing In The Perth Metropolitan Area: 2022, Alissa Tate, Lucy Rudd, Claire B. Smallwood

Fisheries Research Reports

Recreational fishing is a popular activity in Western Australia (WA), occurring throughout the state from boats, and from a variety of natural and man-made structures along the shore. Ongoing monitoring of the shore-based recreational fishery is essential to assist with resource allocation, management evaluation and stock assessments for nearshore species. Especially for species such as Australian Herring and Southern Garfish which had management changes including a reduction in bag limit from 30 to 12 in 2015 and closure of Perth Metropolitan waters in 2017, respectively. An on-site roving creel survey to collect effort and catch data from shore fishers has …

Are Sharks Attracted To Caged Fish And Associated Infrastructure?, Charlie Huveneers, Yuri Niella, Michael Drew, Joshua Dennis, Thomas M. Clarke, Alison Wright, Simon Bryars, Matias Braccini, Chris Dowling, Stephen J. Newman, Paul Butcher, Scott Dalton

Fisheries Research Articles

Huveneers Charlie, Niella Yuri, Drew Michael, Dennis Joshua, Clarke Thomas M., Wright Alison, Bryars Simon, Braccini Matias, Dowling Chris, Newman Stephen J., Butcher Paul, Dalton Scott (2022) Are sharks attracted to caged fish and associated infrastructure?. Marine and Freshwater Research 73, 1404-1410.

https://doi.org/10.1071/MF22039

Using Dietary Additives To Improve Palatability Of Diets Containing Single‐Cell Protein From Methanotrophic Bacteria In Yellowtail Kingfish (Seriola Lalandi) Diets, Luke Pilmer, Lindsey Woolley, Alan J. Lymbery, Michael Salini, Gavin Partridge

Fisheries Research Articles

Single-cell protein (SCP) derived from methanotrophic bacteria has significant potential as a fishmeal alternative in aquafeeds. However, SCP has known palatability issues, to overcome these issues tuna hydrolysate and garlic powder were tested as palatability enhancers against basal diets without these additives. This study tested the inclusion of SCP at four dietary levels of 0%, 10%, 20% and 30%, representing 0%, 25%, 50% and 75% fishmeal replacement in juvenile yellowtail kingfish (Seriola lalandi) (YTK) diets. YTK were fed these diets in triplicate over 35 days. Compared with the control diet, fish fed the SCP10% diet ate less feed, …

Fisheries Genomics Of Snapper (Chrysophrys Auratus) Along The West Australian Coast, Andrea Bertram, David Fairclough, Jonathan Sandoval-Castillo, Chris Brauer, Anthony Fowler, Maren Wellenreuther, Luciano B. Beheregaray

Fisheries Research Articles

The efficacy of fisheries management strategies depends on stock assessment and management actions being carried out at appropriate spatial scales. This requires understanding of spatial and temporal population structure and connectivity, which is challenging in weakly structured and highly connected marine populations. We carried out a population genomics study of the heavily exploited snapper (Chrysophrys auratus) along ~2600 km of the Australian coastline, with a focus on Western Australia (WA). We used 10,903 filtered SNPs in 341 individuals from eight sampling locations to characterize population structure and connectivity in snapper across WA and to assess if current spatial …

Fisheries Management Paper No. 267: Prawn Resource Of Shark Bay Harvest Strategy 2022-2027 (Version 2.0), Department Of Primary Industries And Regional Development, Western Australia

Fisheries Management Papers

This Harvest Strategy has been developed in line with the Department’s Harvest Strategy Policy for Aquatic Resources (Department of Fisheries 2015) and is consistent with relevant national Harvest Strategy policies and guidelines (e.g. Sloan et al. 2014; Department of Agriculture and Water Resources 2018a, b). It makes explicit the performance indicators, reference levels, and harvest control rules designed to achieve the specific long- and short-term management objectives for the resource, and the broader goals of ESD and EBFM. This version of the Harvest Strategy also includes the Bycatch Action Plan (BAP) (refer to Appendix 1), formerly a standalone document.

The …

Fisheries Management Paper No. 276: Western Australian Silverlip Pearl Oyster (Pinctada Maxima) Resource Harvest Strategy 2022 - 2026, Version 2.0, Department Of Primary Industries And Regional Development, Western Australia

Fisheries Management Papers

Harvest strategies for aquatic resources in Western Australia (WA) are formal documents that support decision making processes which are consistent with the principles of Ecologically Sustainable Development (ESD; Fletcher 2002) and Ecosystem Based Fisheries Management (EBFM; Fletcher et al. 2012). The objectives of ESD are reflected in the Fish Resources Management Act 1994 (FRMA), Section 3, and the Aquatic Resources Management Act 2016 (ARMA), Section 9, which will replace the FRMA once enacted.

This Harvest Strategy aligns with DPIRD’s Harvest Strategy Policy for Aquatic Resources (Department of Fisheries 2015) and is consistent with national Harvest Strategy policies and guidelines (Sloan …

Fisheries Science Update - Australian Herring - June 2022, Department Of Primary Industries And Regional Development, Western Australia

Fisheries Science Updates

The latest weight of evidence stock assessment for Australian herring indicates that management arrangements introduced in 2015, combined with suitable environmental conditions, have led to the recovery of the resource.

The Department of Primary Industries and Regional Development (DPIRD) tracks our aquatic resources by undertaking weight of evidence stock assessments every three to five years.

DPIRD has undertaken four contemporary weight of evidence stock assessments of Australian herring since 2000.

The 2000 assessment (22 years ago) indicated the catch was sustainable. However, by 2013 the Australian herring stock status had become high risk and ‘unacceptable’, and new measures were introduced. …

Assessing The Activity Of Antimicrobial Peptides Against Common Marine Bacteria Located In Rotifer (Brachionus Plicatilis) Cultures, Chelsea Woods, Lindsey Woolley, Gavin Partridge, Mengqi Chen, Evan F. Haney, Robert E.W. Hancock, Nicky Buller, Andrew Currie

Fisheries Research Articles

Rotifers are used as the first feed for marine fish larvae and are grown in large cultures that have high loads of organic matter and heterotrophic bacteria; these bacteria are passed on to the developing fish larvae and can potentially lead to bacterial infections. A modified minimum inhibitory concentration (MIC) protocol for antimicrobial peptides was used to determine the potency of ten antimicrobial peptides (AMPs) in artificial seawater relevant to a rotifer culture (salinity of 25‰) against common marine pathogens. All of the AMPs had antimicrobial activity against the bacterial isolates when the salt concentration was approximately zero. However, in …

Development Of Monoclonal Antibodies Against Perkinsus Olseni Using Whole Cells, Eliot Hanrio, Jacqueline Batley, Kathleen Davern, Cecile Dang

Fisheries Research Articles

The genus Perkinsus is comprised of multiple species, notably P. olseni and P. marinus that are on the list of notifiable pathogens of the World Organisation for Animal Health. These protozoans are responsible for mass mortalities in mollusc populations worldwide. Current diagnostic tests for these parasites include incubation in Ray’s fluid thioglycollate medium associated with microscopy, and molecular assays such as PCR or qPCR using species-specific primers, which can be time and labour consuming. To simplify the detection of Perkinsus spp. infections, the current study developed monoclonal antibodies with strong potential for diagnostic use in immunoassays. Mice were immunised with …

Maximization Of Fitness By Phenological And Phenotypic Plasticity In Range Expanding Rabbitfishes (Siganidae), Salvador Zarco-Perello, David Fairclough, Chris Dowling, Joey Dibattista, Rachel Austin, Thomas Wernberg, Brett Taylor

Fisheries Research Articles

1. Global warming is modifying the phenology, life-history traits and biogeography of species around the world. Evidence of these effects have increased over recent decades; however, we still have a poor understanding of the possible outcomes of their interplay across global climatic gradients, hindering our ability to accurately predict the consequences of climate change in populations and ecosystems.
2. We examined the effect that changes in biogeography can have on the life-history traits of two of the most successful range-extending fish species in the world: the tropical rabbitfishes Siganus fuscescens and Siganus rivulatus. Both species have established abundant populations at higher …

Ecological Risk Assessment For The Marine Aquarium Fish Resource, Kimberley Smith, Amelia Bissell, Carly Bruce

Fisheries Research Reports

In November 2021, the Department of Primary Industries and Regional Development convened an Ecological Risk Assessment (ERA) of the Western Australian fisheries that access the Marine Aquarium Fish Resource. ERAs are conducted by the Department as part of its Ecosystem-Based Fisheries Management framework. Outputs of this ERA will inform future versions of the Harvest Strategy for the Resource. Additionally, this ERA is a requirement of the Wildlife Trade Operation approval for the Marine Aquarium Fish Managed Fishery (MAFMF).

Ecological impacts of the MAFMF, which is the only commercial fishery that targets the Resource, and other extractive sectors that access the …

Oestrogenic Subterranean Clover Guide. Identification And Remediation, Kevin J. Foster, Megan H. Ryan, Daniel R. Kidd

Bulletins 4000 -

Subterranean clover (subclover, Trifolium subterraneum L.) is an annual pasture legume that provides high quality feed for livestock. It is estimated to be sown over 30 million hectares across southern Australia, with cultivars developed for the low, medium and high rainfall zones. Unfortunately, some older cultivars contain high levels of phytoestrogen which can affect the reproductive system of sheep and cause other health issues. This became a significant issue for sheep producers from the 1940s as new land was cleared and sheep grazed subclover-dominant pastures. There was a collection of livestock issues observed and these were grouped together under the …

South-West Estuarine And Nearshore Finfish Resource Part 1: Sea Mullet And Yellowfin Whiting, Rodney Duffy Dr., David Harris, Emily Fisher, Kim Smith, Danielle Johnston, Ainslie Denham, Alex Hesp, Blaine Hodgson, Amber Quinn, Marcus Newman

Fisheries Research Reports

This report focuses on one of the primary target species for which biomass-based stock assessments are periodically undertaken - sea mullet (Mugil cephalus). The report also includes a recent stock assessment for yellowfin whiting (Sillago schomburgkii) due to concerns regarding substantial increases in catch relative to historic levels.

Status of stock(s)

Sea mullet

The current stock level is considered to be acceptable, and the current level of fishing mortality is unlikely to deplete the stock to a level at which recruitment could be impaired. On the basis of the evidence provided, the sea mullet stock in …

Fisheries Science Update - Temperate Shark Fisheries - April 2022, Department Of Primary Industries And Regional Development, Western Australia

Fisheries Science Updates

Two fisheries make up Western Australia’s Temperate Shark Fisheries: the West Coast Demersal Gillnet and Demersal Longline Fishery; and the Southern Demersal Gillnet and Demersal Longline Fishery. They are some of the longest standing sustainable target shark fisheries in Australia.

These fisheries contribute to the WA economy by supplying sustainable locally sourced seafood; employing up to 150 people per year; and have an estimated overall annual market value up to $20 million.

774 tonnes of sharks were landed in 2019-20, which is approximately 2.27 million meals. The majority of which goes straight to the WA community, and is commonly found …

Fisheries Science Update - Shark Depredation - April 2022, Department Of Primary Industries And Regional Development, Western Australia

Fisheries Science Updates

Recreational, charter and commercial fishers in Western Australia (WA) are reporting significant increases in shark depredation (bite-offs), particularly in the Gascoyne and Pilbara regions.

Shark depredation is an issue across Northern Australia, with similar reports in Queensland and the Northern Territory. Managing shark depredation is complex, and WA is leading the country in research to better inform our management decisions.

Recent research by the Department of Primary Industries and Regional Development’s (DPIRD) has found that:

• a range of shark species are responsible for bite-offs, including blacktip, dusky, milk, pigeye, sandbar and tiger sharks;
• the probability of sharks taking fish is …

An Industry Life Cycle Assessment (Lca) For Sheep Production In Western Australia, Stephen Wiedemann, Darcia Mcrae, Emma Longworth

Animal production and livestock research reports

The Western Australian Department of Primary Industries and Regional Development (DPIRD) has identified the need to understand greenhouse gas (GHG) emissions from the livestock sector in detail, with a view to developing emission reduction plans for the state. To achieve this, DPIRD commissioned a life cycle assessment (LCA) for the sheep industry in Western Australia (WA) for the financial years (FY) 2005 (July 1, 2004 to June 30, 2005) and 2020 (July 1, 2019 to June 30, 2020). The analysis of one historic period provided a baseline reference point for the more recent results, and the intent was to develop …

Analysis Of Livestock Movements And The Benefits And Costs Of Livestock Standstills In Australia As Part Of The Response To Foot-And-Mouth Disease, Ann Seitzinger, Graeme Garner, Richard Bradhurst, Walter Okelo, Michelle Rodan

Animal production and livestock published reports

This project involved analysis of livestock movements and used epidemiological modelling and cost analysis to estimate the benefits and costs of implementing livestock standstills in response to a foot-and-mouth disease (FMD) outbreak in Australia. This was done in four steps: 1) assessing the extent of livestock movement, 2) conducting a cross sectional analysis of the impact (reduction of outbreak size and economic cost) of implementing a national standstill/movement control, 3) use of case specific studies to estimate impact of state/territory level implementation of standstill, and 4) cost analysis and comparison of national standstill with the state/jurisdictional level and risk-based approach …

Houtman Abrolhos Islands Fish Habitat Protection Area: A Summary Of Marine Resource Use And Ecological Attributes, Scott N. Evans, Nick Konzewitsch, Lynda M. Bellchambers

Fisheries Research Reports

The Houtman Abrolhos Islands (Abrolhos) is an archipelago of up to 210 small islands and associated reefs located approximately 65-90 km offshore from Geraldton, Western Australia (WA). The islands and waters of the Abrolhos are of significance for both land-based and marine based values. The marine state territorial waters of the Abrolhos are managed by the Department of Primary Industries and Regional Development (DPIRD) as the Houtman Abrolhos Islands Fish Habitat Protection Area (Abrolhos FHPA). This report aims to provide a summary of the DPIRD data on aquatic resource use (e.g., aquaculture, commercial, recreational and charter fishing) and ecological attributes …

Western Australian Sea Cucumber Resource Assessment Report, A.M. Hart, D.M. Murphy, F.F. Fabris

Fisheries Research Reports

No abstract provided.

Ecological Risk Assessment For The Western Rock Lobster Resource : Workshop Procedure And Outcomes, R Stoklosa

Fisheries Occasional Publications

No abstract provided.

Final Report Floating Upwelling System Harvest Road Oceans, Robert Michael, Scott Bennett

Fisheries Occasional Publications

A Floating Upwelling System or FLUPSY is a mechanical system for the culture of seed stock during the nursery stage of commercial bivalve production.

Sheep And Goat Industry Funding Scheme Annual Report 2020/2021, Department Of Primary Industries And Regional Development, Western Australia

Biosecurity published reports

The Sheep and Goat Industry Funding Scheme (IFS) has been operating since 2010 to address biosecurity threats relevant to the Western Australian (WA) sheep and goat industry. The Scheme was established by regulation under the Biosecurity and Agriculture Management Act 2007 to enable sheep and goat producers to identify pest and disease priorities at a whole-of-industry level and raise funds for activities to address these priorities.

There are currently three Industry Funding Schemes in operation. In addition to the Sheep and Goat IFS, there is a Cattle IFS and a Grains, Seeds and Hay IFS. The three IFSs operate in …