Animal Sciences Commons^™

Social Influences On Songbird Behavior: From Song Learning To Motion Coordination, Iva Ljubičić

Dissertations, Theses, and Capstone Projects

Social animals learn during development how to integrate successfully into their group. How do social interactions combine to maintain group cohesion? We first review how social environments can influence the development of vocal learners, such as songbirds and humans (Chapter 1). To bypass the complexity of natural social interactions and gain experimental control, we developed Virtual Social Environments, surrounding the bird with videos of manipulated playbacks. This way we were able to design sensory and social scenarios and test how social zebra finches adjust their behavior (Chapters 2 & 3). A serious challenge is that the color output of a …

Precocious Development Of Self-Awareness In Dolphins, Rachel Morrison, Diana Reiss

Publications and Research

Mirror-self recognition (MSR) is a behavioral indicator of self-awareness in young children and only a few other species, including the great apes, dolphins, elephants and magpies. The emergence of self-awareness in children typically occurs during the second year and has been correlated with sensorimotor development and growing social and self-awareness. Comparative studies of MSR in chimpanzees report that the onset of this ability occurs between 2 years 4 months and 3 years 9 months of age. Studies of wild and captive bottlenose dolphins (Tursiops truncatus) have reported precocious sensorimotor and social awareness during the first weeks of life, but no …

Slave To The Rhythm: Variation In The Acoustic Signaling Of Picoides Woodpeckers, Alex Baer

Theses and Dissertations

We explored rhythmic variation in acoustic signals by geography across four species of Picoides woodpeckers. We hypothesized that there would be an effect of geographic location on the cadence of drums and rattle-type calls. No significant effect was observed. However, drum cadence was observed to significantly impact conspecific recognition in playbacks.

Combatting The Illegal Pet Trade: Using Molecular Techniques To Determine The Provenience Of Illegal Ring-Tailed Lemur (Lemur Catta) Pets, Jessica Knierim

Theses and Dissertations

One of the biggest threats facing the Endangered ring-tailed lemur (Lemur catta) is the illegal pet trade. This study compares genotypes of 20 pet L. catta to a geographically-referenced allele frequency database of 4 wild populations (n=35) in attempt to determine their source population. This study will have many conservation implications.

Factors Of Annual Reproductive Success In North American Barn Swallows (Hirundo Rustica Erythrogaster) In Shared Greenspace, Joseph Czeisel

Theses and Dissertations

This study examined three metrics related to barn swallow reproductive success in shared greenspace. Earlier nesting dates were positively related to reproductive output and survival rate. Anthropogenic disturbance was not found to influence productivity. The distance of nests inside structures predicted survival rate. The monitoring of additional seasons is recommended.

A Description Of Nesting Behaviors, Including Factors Impacting Nest Site Selection, In Black‐And‐White Ruffed Lemurs (Varecia Variegata), Andrea L. Baden

Publications and Research

Nest site selection is at once fundamental to reproduction and a poorly understood component of many organisms’ reproductive investment. This study investigates the nesting behaviors of black-and-white ruffed lemurs, Varecia variegata, a litter-bearing primate from the southeastern rainforests of Madagascar. Using a combination of behavioral, geospatial, and demographic data, I test the hypotheses that environmental and social cues influence nest site selection and that these decisions ultimately impact maternal reproductive success. Gestating females built multiple large nests throughout their territories. Of these, females used only a fraction of the originally constructed nests, as well as several parking locations as infants …

Evaluating Behavioral Responses Of Nesting Lesser Snow Geese To Unmanned Aircraft Surveys, Andrew Barnas, Robert Newman, Christopher J. Felege, Michael P. Corcoran, Samuel D. Hervey, Tanner J. Stechmann, Robert F. Rockwell, Susan N. Ellis-Felege

Publications and Research

Unmanned aircraft systems (UAS) are relatively new technologies gaining popularity among wildlife biologists. As with any new tool in wildlife science, operating protocols must be developed through rigorous protocol testing. Few studies have been conducted that quantify the impacts UAS may have on unhabituated individuals in the wild using standard aerial survey protocols. We evaluated impacts of unmanned surveys by measuring UAS-induced behavioral responses during the nesting phase of lesser snow geese (Anser caerulescens caerulescens) in Wapusk National Park, Manitoba, Canada. We conducted surveys with a fixed-wing Trimble UX5 and monitored behavioral changes via discreet surveillance cameras at 25 nests. …

Of Rats And Men, Thomas S. Walsh

Capstones

This capstone is a data-driven investigation into New York City's rat problem. By using publicly available government data to map rat activity in NYC, I identified several socio-economic variables that correlate with rat populations at the community district, borough, and city-scale. I used these findings (mainly that rat problems are linked to lower incomes) as the basis of an investigation, which includes interviews with residents, experts, and city officials. Prof. Bobby Corrigan, urban rodentologist and formerly with the NYC Department of Health criticizes the city's efforts for the first time on the record.

https://thomasseiyawalsh.wixsite.com/ratstone

Four Legs Good, Two Legs Bad: How Slaughterhouse Safety Hasn’T Kept Up With The Times, Emily Ziemski

Capstones

From legal loopholes and outdated rules to undetectable infections and understaffing, the United States Department of Agriculture may not be doing all it can to make sure the American public’s health isn't at risk. As the people of the United States consume over 500 million pounds of beef a year, food safety policy and slaughterhouses are falling behind in proper procedural measurements in the beef industry.

emziemski.com/capstone

Identification And Quantification Of Cyanide And Its Metabolites In Lemur Urine, Jeremy Peralta

Student Theses

Cyanide is a chemical compound that contains the monovalent groups of carbon and nitrogen. This substance is considered a rapidly acting deadly chemical. However, some animals such as lemurs consume food products that are known to contain elevated levels of cyanide without major consequences. The mechanism by which the lemur can handle this high exposure to cyanide is unknown. In this study, we developed and validated two analytical methods for the determination of cyanide and two metabolites, thiocyanate and 2-aminothiazoline-4-carboxylic acid (ATCA) in lemur urine. The method was applied to 47 authentic lemur urine samples collected from 4 different species …

Cryptic Diversity And Discordance In Single‐Locus Species Delimitation Methods Within Horned Lizards (Phrynosomatidae: Phrynosoma), Christopher Blair, Robert W. Bryson Jr.

Publications and Research

Biodiversity reduction and loss continues to progress at an alarming rate, and thus there is widespread interest in utilizing rapid and efficient methods for quantifying and delimiting taxonomic diversity. Single-locus species-delimitation methods have become popular, in part due to the adoption of the DNA barcoding paradigm. These techniques can be broadly classified into tree-based and distance-based methods depending on whether species are delimited based on a constructed genealogy. Although the relative performance of these methods has been tested repeatedly with simulations, additional studies are needed to assess congruence with empirical data. We compiled a large data set of mitochondrial ND4 …

Songbirds Work Around Computational Complexity By Learning Song Vocabulary Independently Of Sequence, Dina Lipkind, Anja T. Zai, Alexander Hanuschkin, Gary F. Marcus, Ofer Tchernichovski, Richard H.R. Hahnloser

Publications and Research

While acquiring motor skills, animals transform their plastic motor sequences to match desired targets. However, because both the structure and temporal position of individual gestures are adjustable, the number of possible motor transformations increases exponentially with sequence length. Identifying the optimal transformation towards a given target is therefore a computationally intractable problem. Here we show an evolutionary workaround for reducing the computational complexity of song learning in zebra finches. We prompt juveniles to modify syllable phonology and sequence in a learned song to match a newly introduced target song. Surprisingly, juveniles match each syllable to the most spectrally similar sound …

Positive Interactions Among Foraging Seabirds, Marine Mammals And Fishes And Implications For Their Conservation, Richard R. Veit, Nancy M. Harrison

Publications and Research

There is increasing recognition of the importance of “positive interactions” among species in structuring communities. For seabirds, an important kind of positive interaction is the use of birds of the same species, birds of other species, and other marine predators such as cetaceans, seals and fishes as cues to the presence of prey. The process by which a single bird uses, say, a feeding flock of birds as a cue to the presence of prey is called “local enhancement” or “facilitation.” There are subtly different uses of each of these terms, but the issue we address here is the ubiquity …

Can Squirrel Monkeys Learn An Abna Grammar? A Re-Evaluation Of Ravignani Et Al. (2013), Stefano Ghirlanda

Publications and Research

Ravignani et al. (2013) habituated squirrel monkeys to sound sequences conforming to an ABnA grammar (nD1;2;3), then tested them for their reactions to novel gram- matical and non-grammatical sequences. Although they conclude that the monkeys ``consistently recognized and generalized the sequence ABnA,'' I remark that this conclusion is not robust. The statistical significance of results depends on specific choices of data analysis, namely dichotomization of the response variable and omission of specific data points. Additionally, there is little evidence of generalization to novel patterns (n D 4;5), which is important to conclude that the monkeys recognized the ABnA grammar beyond …

Studying The Mechanisms Of Developmental Vocal Learning And Adult Vocal Performance In Zebra Finches Through Lentiviral Injection, Zhimin Shi, Ofer Tchernichovski, Xiaoching Li

Publications and Research

Here we provide a detailed step-by-step protocol for using lentivirus to manipulate miRNA expression in Area X of juvenile zebra finches and for analyzing the consequences on song learning and song performance. This protocol has four parts: 1) making the lentiviral construct to overexpress miRNA miR-9; 2) packaging the lentiviral vector; 3) stereotaxic injection of the lentivirus into Area X of juvenile zebra finches; 4) analysis of song learning and song performance in juvenile and adult zebra finches. These methods complement the methods employed in recent works that showed changing FoxP2 gene expression in Area X with lentivirus or adeno-associated …

Behavioral Responses To Pulses Of Light In The Longfin Inshore Squid, Doryteuthis Pealeii (Lesueur, 1821), Stavros P. Hadjisolomou

Dissertations, Theses, and Capstone Projects

The coleoid cephalopods (octopus, squid, and cuttlefish) are masters of rapid, adaptive camouflage. Unlike the slower hormonal chromatophore control of flatfish and chameleons, coleoid mollusks can change body patterns in milliseconds. Visual camouflage in coleoids is driven by a sensorimotor system consisting of visual input of their surroundings, a sophisticated central nervous system for information processing, and a neuromuscular control for body patterning. Motor neurons selectively activate millions of muscles, alternately expanding and reducing the pigmented chromatophores to generate visible brown, red, orange and yellow patterns on the skin. Below the chromatophore-layered skin are two types of reflecting cells, iridophores …

Sexual Dimorphism In Striatal Dopaminergic Responses Promotes Monogamy In Social Songbirds, Kirill Tokarev, Julia Hyland Bruno, Iva Ljubicic, Paresh J. Kothari, Santosh A. Helekar, Ofer Tchernichovski, Henning U. Voss

Publications and Research

In many songbird species, males sing to attract females and repel rivals. How can gregarious, non-territorial songbirds such as zebra finches, where females have access to numerous males, sustain monogamy? We found that the dopaminergic reward circuitry of zebra finches can simultaneously promote social cohesion and breeding boundaries. Surprisingly, in unmated males but not in females, striatal dopamine neurotransmission was elevated after hearing songs. Behaviorally too, unmated males but not females persistently exchanged mild punishments in return for songs. Song reinforcement diminished when dopamine receptors were blocked. In females, we observed song reinforcement exclusively to the mate’s song, although their …

Assessing Behavioral Syndromes In Captive Red Pandas (Ailurus Fulgens) Using An Ethological Approach, Tyler C. Bray

Theses and Dissertations

Animal personality has a significant impact on an animal’s physiology and welfare. Eight captive red pandas were observed to determine if personality can be assessed in this species using an ethological approach. Analysis revealed two behavioral dimensions: 1) Active/Exploratory and 2) Maintenance. Age differences were found in the Active/Exploratory dimension.

Gait Changes In A Line Of Mice Artificially Selected For Longer Limbs, Leah M. Sparrow, Emily Pellattt, Sabrina S. Yu, David A. Raichlen, Herman Pontzer, Campbell Rolian

Publications and Research

In legged terrestrial locomotion, the duration of stance phase, i.e., when limbs are in contact with the substrate, is positively correlated with limb length, and negatively correlated with the metabolic cost of transport. These relationships are well documented at the interspecific level, across a broad range of body sizes and travel speeds. However, such relationships are harder to evaluate within species (i.e., where natural selection operates), largely for practical reasons, including low population variance in limb length, and the presence of confounding factors such as body mass, or training. Here, we compared spatiotemporal kinematics of gait in Longshanks, a long-legged …

Egg Discrimination Along A Gradient Of Natural Variation In Eggshell Coloration, Daniel Hanley, Tomáš Grim, Branislav Igic, Peter Samaš, Analía V. López, Matthew D. Shawkey, Mark E. Hauber

Publications and Research

Accurate recognition of salient cues is critical for adaptive responses, but the underlying sensory and cognitive processes are often poorly understood. For example, hosts of avian brood parasites have long been assumed to reject foreign eggs from their nests based on the total degree of dissimilarity in colour to their own eggs, regardless of the foreign eggs’ colours. We tested hosts’ responses to gradients of natural (blue-green to brown) and artificial (green to purple) egg colours, and demonstrate that hosts base rejection decisions on both the direction and degree of colour dissimilarity along the natural, but not artificial, gradient of …

Lemurfaceid: A Face Recognition System To Facilitate Individual Identification Of Lemurs, David Crouse, Rachel L. Jacobs, Zach Richardson, Scott Klum, Anil Jain, Andrea L. Baden, Stacey R. Tecot

Publications and Research

Background: Long-term research of known individuals is critical for understanding the demographic and evolutionary processes that influence natural populations. Current methods for individual identification of many animals include capture and tagging techniques and/or researcher knowledge of natural variation in individual phenotypes. These methods can be costly, time-consuming, and may be impractical for larger-scale, populationlevel studies. Accordingly, for many animal lineages, long-term research projects are often limited to only a few taxa. Lemurs, a mammalian lineage endemic to Madagascar, are no exception. Long-term data needed to address evolutionary questions are lacking for many species. This is, at least in part, due …

Are Weevils Picky Eaters? Community Structure And Host Specificity Of Neotropical Saproxylic Beetles (Coleoptera: Curculionidae), Jhunior A. Morillo

Dissertations and Theses

Abstract Primary saproxylic beetles play a major role in forest nutrient cycling and making deadwood accessible to other decomposers. Understanding beetle host preferences and patterns of community assembly is critical for their conservation, and for predicting which species might become invasive. This project aims to investigate the ecological and host specificity, as well as the community composition of curculionids in a mosaic of old-growth (OG) and secondary forest on the Osa Peninsula, Costa Rica. The subfamily Scolytinae was expected to be the most species-rich and abundant. Ambrosia beetles were expected to have more generalist species than other curculionids. Old growth …

Why We Still Need To Worry About Bees, Meaghan Lee Callaghan

Capstones

American honey bees, and other native bee species, are still in decline, though the specter of colony collapse disorder may be fading behind us. Colony decline, the loss of bees overwinter experienced across the country at a quarter to third lost per hive (sometimes more), is now expected. Losses can include those from colony collapse disorder. The author discusses the different causes for colony decline and speaks to bee health scientists and local beekeepers. Read more at: http://www.meaghanleecallaghan.com/capstone/index.html

Flight Of The Freshwater Fish, Michael H. Wilson

Capstones

Michael H. Wilson

Capstone Abstract

December 27, 2016

Flight of the Freshwater Fish

The Hudson River provides for millions of people as a path for commercial and private transportation, a source of food and energy, and perhaps most importantly for many living in the tri-state area as a destination for recreation and relaxation. The most overlooked feature of the river is how the wildlife shows clear signs of a changing climate and rapid environmental response to the impacts of global warming on the river.

Entire populations of fish species in the lower Hudson have been forced to leave the river …

The Power Of Associative Learning And The Ontogeny Of Optimal Behaviour, Magnus Enquist, Johan Lind, Stefano Ghirlanda

Publications and Research

Behaving efficiently (optimally or near-optimally) is central to animals’ adaptation to their environment. Much evolutionary biology assumes, implicitly or explicitly, that optimal behavioural strategies are genetically inherited, yet the behaviour of many animals depends crucially on learning. The question of how learning contributes to optimal behaviour is largely open. Here we propose an associative learning model that can learn optimal behaviour in a wide variety of ecologically relevant circumstances. The model learns through chaining, a term introduced by Skinner to indicate learning of behaviour sequences by linking together shorter sequences or single behaviours. Our model formalizes the concept of conditioned …

Gruber Explores The Living Lights Of The Oceans., Aldemaro Romero Jr.

Publications and Research

The ocean waters are full of creatures that produce light, from microscopic organisms to sharks and marine turtles. Sometimes human vision is not prepared to detect it, but that does not mean such phenomena, known as bioluminescence and biofluorescence, are unimportant.

“There’s so many different ways in which life perceives light, and trying to get inside these animals, to get behind their eyes, is almost like walking in someone else’s shoes,” says Dr. David Gruber, an associate professor of biology at Baruch College in New York City. “It’s like being someone else for a day.”

Statistical Learning In Songbirds: From Self-Tutoring To Song Culture, Olga Fehér, Iva Ljubičić, Kenta Suzuki, Kazuo Okanoya, Ofer Tchernichovski

Publications and Research

At the onset of vocal development, both songbirds and humans produce variable vocal babbling with broadly distributed acoustic features. Over development, these vocalizations differentiate into the well-defined, categorical signals that characterize adult vocal behaviour. A broadly distributed signal is ideal for vocal exploration, that is, for matching vocal production to the statistics of the sensory input. The developmental transition to categorical signals is a gradual process during which the vocal output becomes differentiated and stable. But does it require categorical input?We trained juvenile zebra finches with playbacks of their own developing song, produced just a few moments earlier, updated continuously …

Sex And Seasonal Differences In Diet And Nutrient Intake In Verreaux's Sifakas (Propithecus Verreauxi), Flávia Koch, Joerg U. Ganzhorn, Jessica M. Rothman, Colin A. Chapman, Claudia Fichtel

Publications and Research

Fluctuations in food availability are a major challenge faced by primates living in seasonal climates. Variation in food availability can be especially challenging for females, because of the high energetic costs of reproduction. Therefore, females must adapt the particular demands of the different reproductive stages to the seasonal availability of resources. Madagascar has a highly seasonal climate, where food availability can be extremely variable. We investigated the seasonal changes in diet composition, nutrient and energy intake of female and male sifakas (Propithecus verreauxi) in a dry deciduous forest in western Madagascar. We examined how females adjust their diet to different …

Phylogeny, Systematics And Biogeography Of Short-Tailed Opossums (Didelphidae: Monodelphis), Silvia E. Pavan

Dissertations, Theses, and Capstone Projects

Short-tailed opossums (genus Monodelphis) comprise the most species-rich genus of New World marsupials, with 25 currently recognized species. Monodelphis comprise small, terrestrial species collectively widespread in South America, which makes the group potentially informative about biogeographic processes that have shaped the continental fauna. The genus exhibits striking variation in several phenotypic characters, notably pelage coloration, behavior, and reproductive strategies. This diversity is unique among Neotropical marsupials, and makes the group particularly interesting to investigate the evolution and the adaptive significance of phenotypic trait variation. Despite this potential, missing knowledge on phylogeny and basic taxonomy precludes broader studies on evolution …

The Role Of Individual Cognitive And Behavioral Ontogeny In Organization And Evolution Of Social Systems, Andrew G. Fulmer

Dissertations, Theses, and Capstone Projects

Exploration and explanation of the relationship between individual variation in behavior and the composition and adaptive success of social groups or populations are crucial problems in the fields of behavioral ecology, ethology, and comparative psychology. These questions have been the subject of a longstanding discussion at both the proximate and ultimate levels of inquiry. Adaptive mechanisms explaining social decision making, both in terms of affiliative and competitive partner choices, are at the center of such discussions. Inclusive fitness, kin-selection, handicap or prestige, risk seeking and risk avoiding strategies, pay-to-stay/reward principles, as well as other theories have been proposed and supported …