Animal Sciences Commons^™

Highly Pathogenic Avian Influenza A(H5n1) Virus Outbreak In New England Seals, United States, Wendy Puryear, Kaitlin Sawatzki, Nichola Hill, Alexa Foss, Jonathon J. Stone, Lynda Doughty, Dominique Walk, Katie Gilbert, Maureen Murray, Elena Cox, Priya Patel, Zak Mertz, Stephanie Ellis, Jennifer Taylor, Deborah Fauquier, Ainsley Smith, Robert A. Digiovanni, Adriana Van De Guchte, Ana Silvia Gonzalez-Reiche, Zain Khalil, Harm Van Bakel, Mia K. Torchetti, Kristina Lantz, Julianna B. Lenoch, Jonathan Runstadler

United States Department of Agriculture Wildlife Services: Staff Publications

We report the spillover of highly pathogenic avian influenza A(H5N1) into marine mammals in the northeastern United States, coincident with H5N1 in sympatric wild birds. Our data indicate monitoring both wild coastal birds and marine mammals will be critical to determine pandemic potential of influenza A viruses.

The Nebraska Bird Review: A Magazine Of Ornithology Of The Nebraska Region. Volume 91, Number 1. March 2023, Nebraska Ornithologists’ Union

Nebraska Bird Review

Winter Field Report, Dec. 2022 - Feb. 2023 by W. Ross Silcock

Annual Color Photo Section

Annual Treasurer's Report for 2022 by Jan Johnson

Subscription and Organization Information

2022-2023 Christmas Bird Counts, Don Paseka

Nebraska Bird Review

Sixteen counts were run in the 2022-2023 CBC season. Because of weather and rescheduling issues, the Crawford, Harrison, and Harlan County counts were cancelled. Eight of the counts were completed during the first week of the count period and the other eight were scattered throughout the remainder of the count period. An early December cold snap seemed to drive many of the birds south, but the weather on actual count days was fairly benign: mostly dry with an average high of 34˚F and an average low of 19˚F and with three circles reporting light snow. The total number of species …

The Nebraska Bird Review Annual Color Photo Section

Nebraska Bird Review

Virginia Rail and chick, Washboard Road, North Platte, Lincoln Co., 28 June 2023. Photo by Boni Edwards.

American Coot, Eagle Scout Lake, Hall Co., April 2020. Photo by Colleen Childers.

Hudsonian Godwit, Marsh Wren Community Wetlands, Lancaster Co., 21 May 2022. Photo by Kirill Belashchenko.

American Avocet, N.P. Dodge Park, Omaha, Douglas Co., 2 May 2023. Photo by Thane Dinsdale

Female Cape May Warbler, photographer's backyard, Bellevue, Sarpy Co., 10 May 2022. Photo by Loren Padelford.

Male Cape May Warbler, Ft. Niobrara NWR, Cherry Co., 13 May 2022. Photo by Gordon Warrick.

Tennessee Warbler, Fontenelle Forest Wetlands, Sarpy Co., 24 …

Prairie Dogs, Gary Witmer, Jon Grant, Kendra Cross

Wildlife Damage Management Technical Series

Prairie dogs (Cynomys spp.) occur throughout the prairie states of middle North America from Mexico northward into Canada. They occupy a variety of habitats from prairies to high mountain valleys and sage brush-dominated deserts. The most common species is the black-tailed prairie dog (Cynomys ludovicianus; Figure 1). Prairie dogs are considered a “keystone species.” They provide habitat for many other native, grassland species. Prairie dogs live in colonies or “towns” that can span hundreds to thousands of acres. Depending on the species, their presence is evident by their burrow system. Despite the many ecosystem benefits prairie dogs provide by modifying …

Annual Treasurer's Report For 2022, Jan Johnson

Nebraska Bird Review

No abstract provided.

Winter Field Report, Dec. 2022 - Feb. 2023, W. Ross Silcock

Nebraska Bird Review

Since this is a Winter Seasonal Report, it seems appropriate to lead off with notable reports of occurrences that might be considered unexpected for midwinter, of which there were several. A range of species was involved, suggesting an encompassing cause such as climate change. Of interest were northerly wintering groups of waterfowl including Gadwall, Green-winged Teal, Canvasback, Ringnecked Duck, and Hooded Merganser. Reports of wintering Tundra Swans, Whitewinged Doves, and Lesser Goldfinches continue to increase, and numerous Redwinged Blackbirds in the northeast in midwinter were unexpected. Also quite unexpected were two Sandhill Cranes wintering in the east, the state’s first …

Blanding’S Turtle (Emydoidea Blandingii): Species Conservation Assessment, Melissa J. Panella, Colleen Rothe-Groleau

Nebraska Game and Parks Commission: Publications

The primary goal in development of at-risk species conservation assessments is to compile biological and ecological information that may assist conservation practitioners in making decisions regarding the conservation of species of interest. The Nebraska Natural Legacy Project recognizes the Blanding’s turtle (Emydoidea blandingii) as a Tier 1 at-risk species. Some general management recommendations are made here regarding Blanding’s turtles; however, conservation practitioners will need to use professional judgment to make specific management decisions based on objectives, location, and a multitude of variables. This resource was designed to share available knowledge of this at-risk turtle that will aid in the decision-making …

An Evaluation Of Avian Influenza Virus Whole-Genome Sequencing Approaches Using Nanopore Technology, Hon S. Ip, Sarah Uhm, Mary Lea Killian, Mia K. Torchetti

United States Department of Agriculture Wildlife Services: Staff Publications

As exemplified by the global response to the SARS-CoV-2 pandemic, whole-genome sequencing played an important role in monitoring the evolution of novel viral variants and provided guidance on potential antiviral treatments. The recent rapid and extensive introduction and spread of highly pathogenic avian influenza virus in Europe, North America, and elsewhere raises the need for similarly rapid sequencing to aid in appropriate response and mitigation activities. To facilitate this objective, we investigate a next-generation sequencing platform that uses a portable nanopore sequencing device to generate and present data in real time. This platform offers the potential to extend in-house sequencing …

What Drives Larval Condition For Northern Anchovy (Engraulis Mordax)? Implications For Coastal Pelagic Species Recruitment Fluctuations And Fishery Management Practices, Michelle Robidas

Theses

Discerning the causes of population boom and bust cycles for coastal pelagic species (CPS) has been a major focus of fisheries management research for over a century. Year-class strength is contingent on larval survival and condition, which can be influenced by larval size at age and growth rate. These two factors, in turn, can be affected by maternal investment and environmental variables such as water temperature, salinity, oxygen, and chlorophyll a. We evaluated each of these factors from 127 two to eight week-old Northern Anchovy (Engraulis mordax) larvae off the coast of San Diego to San Francisco, …

Sheep Ingestive Behavior And Tannin Selection In Pampa Grassland And Feedlot, Marina Terra Braga

Green Canyon Environmental Research Area, Logan Utah

The Pampa grassland biome has high plant biodiversity, some with significant secondary compound concentrations such as tannins. Tannin inclusion in ruminant diets may improve meat quality and productivity. However, voluntary intake of this phenolic compound can be a challenge. This dissertation includes three studies within this context. The first study documented whether sheep consume tannin-rich Desmodium incanum (DI), the most common Pampa herbaceous legume species. The second study evaluated how forage tannin and protein concentration influenced sheep feedlot feed selection and the diet affects performance parameters. The third study evaluated sheep feeding behavior in a Pampa native pasture, and how …

Comparing Fish Species Assemblage Between Impacted And Restored Estuarine Salt Marshes Within The Eel River Estuary, Humboldt Co. Ca, Adam Aguilar, Isaac Basham-Clair, Tristan F. Parkinson, Larkin C. Wells

Undergraduate Scholarship

This report details a study assessing the fish assemblages of a recently restored estuarine salt marsh site, and a similar unrestored and impacted site along the Eel River estuary. These two sites are located within the Eel River (Wiya’t) estuary, roughly 10 miles west of the city of Fortuna, CA. This study was conducted during the months of September through October 2023. Data collection was done through seine net dragging at randomly selected sample points across both sites. Seine net hauls were recorded by species and species count, which were later computed using a diversity index to provide values representative …

A Preliminary Assessment Of The Spawning Potential Ratio Of Five Target Species Of The Coastal Gillnet Fishery In Guyana And Suriname, Tomas Willems, Elford Liverpool, Michael Hiwat

Gulf and Caribbean Research

Data—limited stock assessment methods have the potential to positively impact livelihoods of fishermen around the world by providing management recommendations that aim to optimize sustainable yields from fisheries. Some years ago, a novel length— based (LB) method was developed for the assessment of spawning potential ratio (SPR), a measure of the reproductive capacity of fish stocks. We applied the LB—SPR method to 5 important target species of the coastal gillnet fishery in Guyana and Suriname. Nebris microps (Smalleye Croaker; 32% SPR) and Macrodon ancylodon (King Weakfish; 34% SPR) had the highest spawning potential, but remained below the 40% target level …

Differences In Drifting Invertebrate Communities Across Arctic Ecozones And The Influence On Potential Growth Of Grayling (Thymallus Arcticus), Charles Chanyi

Theses and Dissertations (Comprehensive)

Invertebrate drift is a key process that potentially affects multiple levels of food web organization within stream environments. However, our understanding of the mechanistic drivers of drift in high latitude streams and subsequent bottom-up control that drift may have on fish predators in these environments remains understudied. This project aimed to gain the baseline knowledge of how drift functions across two major high latitude ecozones, the boreal forest and tundra, and how those possible differences in drifting community characteristics may impact drift-feeding Arctic grayling (Thymallus arcticus). These objectives were accomplished by characterizing stream environments across both ecozones, sampling …

Quantifying Antarctic Krill Connectivity Across The West Antarctic Peninsula And Its Role In Large-Scale Pygoscelis Penguin Population Dynamics, Katherine L. Gallagher, Michael S. Dinniman, Heather J. Lynch

CCPO Publications

Antarctic krill (Euphausia superba) are considered a keystone species for higher trophic level predators along the West Antarctic Peninsula (WAP) during the austral summer. The connectivity of krill may play a critical role in predator biogeography, especially for central-place foragers such as the Pygoscelis spp. penguins that breed along the WAP during the austral summer. Antarctic krill are also heavily fished commercially; therefore, understanding population connectivity of krill is critical to effective management. Here, we used a physical ocean model to examine adult krill connectivity in this region using simulated krill with realistic diel vertical migration behaviors across …

Chemical Immobilization Of Helicopter-Captured Elk (Cervus Canadensis) And Survival Of Elk Calves In Southeastern Kentucky, Kathleen E. Williams

Theses and Dissertations--Forestry and Natural Resources

Safe and effective chemical immobilization is critical to minimize stress and risk of injury when capturing free-ranging, wild ungulates. Many traditionally favored high potency opioids have been phased out or become unavailable because of increased regulations, leading to the development of two pre-mixed combination drugs, butorphanol-azaperone-medetomidine (BAM) and nalbuphine-medetomidine-azaperone (NalMed-A). Both drugs have been used to chemically immobilize ungulates, but their efficacy has not been documented in elk captured and transported via helicopter. During 2020 – 2022, we chemically immobilized helicopter-captured female elk (Cervus canadensis) with a single IM-injection of BAM (n = 41) or NalMed-A (n = …

Unraveling A Paradox Of Habitat Relationships: Scale-Dependent Drivers Of Temporal Occupancy-Abundance Relationships In A Cooperatively Breeding Bird, Natasha D.G. Hagemeyer, Mario B. Pesendorfer, Walter D. Koenig, Eric L. Walters

Biological Sciences Faculty Publications

Context Spatial occupancy and local abundance of species often positively covary, but the mechanisms driving this widespread relationship are poorly understood. Resource dynamics and habitat changes have been suggested as potential drivers, but long-term studies relating them to abundance and occupancy are rare. In this 34-year study of acorn woodpeckers (Melanerpes formicivorus), a cooperatively breeding species, we observed a paradoxical response to changes in habitat composition: despite a reduction in the availability of high-quality breeding habitat, the population increased considerably.

Objectives We investigated the role of annual variation in food availability and long-term changes in habitat composition as predictors …

Space Use And Movements Of Southeastern Breeding Double-Crested Cormorants (Nannopterum Auritum) In The United States, Leah L.K. Moran, Brian S. Dorr, Katie C. Hanson-Dorr, R. J. Moore, Scott A. Rush

United States Department of Agriculture Wildlife Services: Staff Publications

Abstract: Seasonal movements of Double-crested Cormorants (Nannopterum auritum) have been studied at breeding and wintering sites in the southeastern United States, but little information exists on the movements of these birds within and from their southern breeding sites in lacustrine systems. Since 2001, cormorants have established nesting colonies on islands in Guntersville Reservoir in Alabama, USA. Following the movements of tagged cormorants using satellite telemetry, we found that the mean home range during the 2017 breeding season (May–August) was 41.76 km², with a core use area of 6.36 km². The mean home range used …

Variance In Offspring Sex Ratio And Maternal Allocation In A Highly Invasive Mammal, Sarah M. Chinn, Timothy J. Smyser, James C. Beasley

United States Department of Agriculture Wildlife Services: Staff Publications

Skewed sex ratios at birth are widely reported in wild populations, however, the extent to which parents are able to modulate the sex ratio of offspring to maximize their own fitness remains unclear. This is particularly true for highly polytocous species as maximizing fitness may include trade-offs between sex ratio and the size and number of offspring in litters. In such cases, it may be adaptive for mothers to adjust both the number of offspring per litter and offspring sex to maximize individual fitness. Investigating maternal sex allocation in wild pigs (Sus scrofa) under stochastic environmental conditions, we predicted that …

Invasive Frogs Show Persistent Physiological Differences To Elevation And Acclimate To Colder Temperatures, Jack R. Marchetti, Karen H. Beard, Emily E. Virgin, Erin L. Lewis, Steven C. Hess, Kwanho C. Ki, Layne O. Sermersheim, Adriana P. Furtado, Susannah S. French

United States Department of Agriculture Wildlife Services: Staff Publications

The coqui frog (Eleutherodactylus coqui) was introduced to the island of Hawai’i in the 1980s and has spread across much of the island. Concern remains that this frog will continue to expand its range and invade higher elevation habitats where much of the island’s endemic species are found. We determined whether coqui thermal tolerance and physiology change along Hawai’i’s elevational gradients. We measured physiological responses using a short-term experiment to determine baseline tolerance and physiology by elevation, and a long-term experiment to determine the coqui’s ability to acclimate to different temperatures. We collected frogs from low, medium, and …

Fusion Of Visible And Thermal Images Improves Automated Detection And Classification Of Animals For Drone Surveys, B. Santhana Krishnan, Landon R. Jones, Jared A. Elmore, Sathishkumar Samiappan, Kristine O. Evans, Morgan Pfeiffer, Bradley Blackwell, Raymond Iglay

United States Department of Agriculture Wildlife Services: Staff Publications

Visible and thermal images acquired from drones (unoccupied aircraft systems) have substantially improved animal monitoring. Combining complementary information from both image types provides a powerful approach for automating detection and classification of multiple animal species to augment drone surveys. We compared eight image fusion methods using thermal and visible drone images combined with two supervised deep learning models, to evaluate the detection and classification of white-tailed deer (Odocoileus virginianus), domestic cow (Bos taurus), and domestic horse (Equus caballus). We classified visible and thermal images separately and compared them with the results of image fusion. …

Spatial Ecology Of Translocated Raccoons, Jacob E. Hill, James L. Helton, Richard B. Chipman, Amy Gilbert, James C. Beasley, Guha Dharmarajan, Olin E. Rhodes

United States Department of Agriculture Wildlife Services: Staff Publications

Raccoons (Procyon lotor) are routinely translocated both legally and illegally to mitigate conflicts with humans, which has contributed to the spread of rabies virus across eastern North America. The movement behavior of translocated raccoons has important ramifications for disease transmission yet remains understudied and poorly quantified. To examine the spatial ecology of raccoons following experimental translocation, we performed reciprocal 16 km-distance translocations of 30 raccoons between habitats of high and low raccoon density (bottomland hardwood and upland pine, respectively) across the Savannah River Site (SRS) in Aiken, South Carolina, USA (2018–2019). Translocation influenced patterns of raccoon space use, …

Evaluation Of Oral Baits And Distribution Methods For Tasmanian Devils (Sarcophilus Harrisii), Sean Dempsey, Ruth J. Pyer, Amy Gilbert, Nicholas M. Fountain-Jones, Jennifer M. Moffat, Sarah Benson-Amram, Timothy J. Smyser, Andrew S. Flies

United States Department of Agriculture Wildlife Services: Staff Publications

Context

Diseases are increasingly contributing to wildlife population declines. Tasmanian devil (Sarcophilus harrisii) populations have locally declined by 82%, largely owing to the morbidity and mortality associated with two independent transmissible devil facial tumours (DFT1 and DFT2). Toxic baits are often used as a management tool for controlling vertebrate pest populations in Australia, but in other areas of the world, oral baits are also used to deliver vaccines or pharmaceuticals to wildlife.

Aim

Our goal was to evaluate the potential use of edible baits as vehicles for vaccine delivery to Tasmanian devils.

Method

We first tested bait palatability with …

Comparison Of Daily Activity Patterns Across Seasons Using Gps Telemetry And Camera Trap Data For A Widespread Mammal, David W. Wolfson, Peter E. Schlichting, Raoul K. Boughton, Ryan S. Miller, Kurt C. Vercauteren, Jesse S. Lewis

United States Department of Agriculture Wildlife Services: Staff Publications

Daily activity patterns of animals can be dynamic across seasons in response to changing environmental conditions. Daily activity, though, has rarely been evaluated in relation to multiple factors (for example, seasons, demographics, and data collection methods), which could be important for understanding what drives activity patterns. Here, we evaluated the daily activity patterns of a widespread invasive species, wild pigs (Sus scrofa), across two ecologically different study areas at Buck Island Ranch, Florida, and Tejon Ranch, California (United States), from 2015 to 2018. Using GPS telemetry data (62 individuals in Florida, 21 individuals in California) and detections from …

Are Rabid Raccoons (Procyon Lotor) Ready For The Rapture? Determining The Geographic Origin Of Rabies Virus-Infected Raccoons Using Radcapture And Microhaplotypes, Matthew W. Hopken, Antoinette J. Piaggio, Zaid Abdo, Richard B. Chipman, Clara P. Mankowski, Kathleen M. Nelson, Mikaela Samsel Hilton, Christine Thurber, Mirian T. N. Tsuchiya, Jesús E. Maldonado, Amy T. Gilbert

United States Department of Agriculture Wildlife Services: Staff Publications

North America is recognized for the exceptional richness of rabies virus (RV) wildlife reservoir species. Management of RV is accomplished through vaccination targeting mesocarnivore reservoir populations, such as the raccoon (Procyon lotor) in eastern North America. Raccoons are a common generalist species, and populations may reach high densities in developed areas, which can result in contact with humans and pets with potential exposures to the raccoon variant of RV throughout the eastern United States. Understanding the spatial movement of RV by raccoon populations is important for monitoring and refining strategies supporting the landscape-level control and local elimination of …

Estimating The Distribution Of Oryzomys Palustris, A Potential Key Host In Expanding Rickettsial Tick-Borne Disease Risk, Catherine A. Lippi, Samuel Canfield, Christina Espada, Holly D. Gaff, Sadie J. Ryan

Biological Sciences Faculty Publications

Increasingly, geographic approaches to assessing the risk of tick-borne diseases are being used to inform public health decision-making and surveillance efforts. The distributions of key tick species of medical importance are often modeled as a function of environmental factors, using niche modeling approaches to capture habitat suitability. However, this is often disconnected from the potential distribution of key host species, which may play an important role in the actual transmission cycle and risk potential in expanding tick-borne disease risk. Using species distribution modeling, we explore the potential geographic range of Oryzomys palustris, the marsh rice rat, which has been …

An Automatic System To Evaluate Bait Station Visitation By Brown Treesnakes And Mongooses, Robert T. Sugihara, William C. Pitt, Are R. Berentsen, Francis L. Benevides Jr.

Human–Wildlife Interactions

Understanding the temporal, spatial, and behavioral patterns of the free-ranging target species in response to candidate baits and baiting strategies is important to ensure control success. This information can also assist in the development and deployment of feeding stations and can exclude non-target species while constituting effective bait delivery and control strategies for certain invasive animals, especially at environmentally sensitive sites. We used passive integrated transponder (PIT) tags in conjunction with very-high frequency radio-telemetry to remotely record bait station visitations and evaluate bait attractiveness in separate field research studies of brown treesnakes (Boiga irregularis) on Andersen Air Force …

Effectiveness Of Citizen Engagement In A State Agency Egg-Oiling Program To Reduce Urban Canada Goose Populations And Conflicts, Charles H. Cope, Tom F. Bidrowski, Jon P. Beckmann

Human–Wildlife Interactions

In many cases, urban environments create high-quality habitat for wildlife that may allow species to form commensal relationships with humans. Positive impacts of urban environments (e.g., high-quality nesting habitat) may enhance survival and/or increased fecundity. One species that has shown the ability to form commensal relationships with humans in urban environments is Canada geese (Branta canadensis). Canada goose populations have continued to rebound in Kansas, USA, and across the Great Plains, such that the estimated resident population in Wichita, Kansas, grew from 0 to >5,000 resident geese and the over-winter population increased from 1,600 in 1997 to >18,000 …

A Critical Look At Wild Pig Elimination: Myths And Facts, Kim M. Pepin, Travis L. Guerrant, Jeremiah L. Psiropoulos, Jeanine T. Neskey, John M. Tomeček, Michael J. Bodenchuk, Janean L. Romines

Human–Wildlife Interactions

Wild pigs (Sus scrofa) are abundant and widely distributed in the United States. They damage crops and pastures, predate livestock and sensitive species, impact ecosystem functions, and damage personal property. To address these issues, some states in the United States are seeking complete elimination. A frequently asked question by stakeholders is: “What portion of the population needs to be removed annually to reach elimination?” The number 70% is widely touted as the answer. There is little scientific evidence to support that this percent annual removal would be needed to achieve elimination, yet 70% has now become a standard …

Livestock Depredation By Leopards, Associated Economic Losses, And Financial Compensation To Communities In Chhota Udepur District Of Central Gujarat, India, Shalu Mesaria, Pratik Desai, Shruti Patel, Dhaval Gadhavi, Anthony J. Giordano, Nishith Dharaiya

Human–Wildlife Interactions

Livestock depredation by large carnivores has been documented across the entire Indian subcontinent. The failure of managers to mitigate livestock losses in landscapes dependent on subsistence agriculture poses a threat to the conservation of carnivores. For much of Gujarat, a western Indian state characterized by extensive semi-arid habitats, the Indian leopard (Panthera pardus fusca) is considered an apex predator. Increasing regional leopard populations in response to protection efforts has led to more attacks on humans, along with an increase in rates of livestock depredation. In many cases, the regional forest department financially compensates livestock owners for depredation caused …