Animal Sciences Commons^™

Crab Larval Abundance And Settlement Patterns In A Changing Chesapeake Bay, Itchika Sivaipram

Dissertations, Theses, and Masters Projects

All estuarine crabs have two larval stages, the zoea and the megalopa. Zoeae are entirely planktonic, whereas megalopae begin as plankton before beginning to search for settlement substrates as late stage megalopae. At both stages, crab larvae are subject to environmental conditions of the estuary. With changing environmental conditions due to anthropogenic activities and climate change, an understanding of how these planktonic larvae respond to environmental conditions is necessary for understanding subsequent larval supply to benthic populations and implication for fisheries management and habitat restoration. For this dissertation, I: 1) analyzed long-term timeseries in the lower Chesapeake Bay for spatial …

Evaluation Of Striped Bass Stocks In Virginia: Monitoring And Tagging Studies, 2015-2019 Progress Report 1 September 2016 - 31 November 2017, Philip W. Sadler, Lydia M. Goins, John M. Hoenig, Savannah Michaelsen, Maya L. Groner, Robert E. Harris

Reports

This report presents the results of striped bass (Morone saxatilis) tagging and monitoring activities in Virginia during the period 1 September 2016 through 31 August 2017. It includes an assessment of the biological characteristics of striped bass taken from the 2017 spring spawning run and estimates of annual survival and fishing mortality based on annual spring tagging. Also included is an investigation on the potential use of close-kin analyses to determine the size of the spawning stock in the Rappahannock River and an evaluation of mortality rates associated with the bacterial dermal disease mycobacteriosis in relation to water …

A Brief Guide To Striped Bass Ecology & Management In Chesapeake Bay, Mary C. Fabrizio, Troy D. Tuckey, Susanna Musick

Reports

Chesapeake Bay striped bass support important recreational fisheries along the US Atlantic coast; in the late 1970s, the population of striped bass collapsed as a result of overfishing and poor water quality in rivers used for spawning and rear-ing of young. Informed by stock assessments, strict management regulations were enacted in the mid-1980s and early 1990s; these highly effective regulations resulted in the recovery of the population in 1995. A key to the successful recov-ery of the Atlantic coast striped bass was the wide range of ages of spawning females and the associated differences in spawning behavior among ages. Age …

Sea Level Rise May Increase Extinction Risk Of A Saltmarsh Ontogenetic Habitat Specialist, David S. Johnson, Bethany L. Williams

VIMS Articles

Specialist species are more vulnerable to environmental change than generalist species. For species with ontogenetic niche shifts, specialization may occur at a particular life stage making those stages more susceptible to environmental change. In the salt marshes in the northeast U.S., accelerated sea level rise is shifting vegetation patterns from flood-intolerant species such as Spartina patens to the flood-tolerant Spartina alterniflora. We tested the potential impact of this change on the coffee bean snail, Melampus bidentatus, a numerically dominant benthic invertebrate with an ontogenetic niche shift. From a survey of eight marshes throughout the northeast U.S., small snails …

Estimation Of Juvenile Striped Bass Relative Abundance In The Virginia Portion Of Chesapeake Bay: Annual Progress Report 2016-2017, Brian K. Gallagher, Mary C. Fabrizio, Troy D. Tuckey

Reports

The 2016 Striped Bass juvenile abundance index was 5.15 and was not significantly different from the reference mean of 7.77 observed in 1980-2009. Abundance indices in the James, York and Rappahannock rivers in 2016 were not significantly different than their historic averages (1967-2015). Juvenile White Perch abundance indices in 2016 were near historic averages in the York and Rappahannock rivers, but below the historic average in the James River. Because a new seine net was used during the 2016 survey, catches of Striped Bass and White Perch were adjusted using preliminary calibration factors derived from paired hauls of the old …

Virginia Game Fish Tagging Program Annual Report 2016, Susanna Musick, Lewis Gillingham

Reports

Through 2016, the Virginia Game Fish Tagging Program (VGFTP) has maintained a 21-year database of records for tagged and recaptured fish. The program is a cooperative project of the Virginia Saltwater Fishing Tournament (VSFT) under the Virginia Marine Resources Commission-(VMRC) and the Virginia Institute of Marine Science (VIMS) of the College of William and Mary (under the VIMS Marine Advisory Program).

Virginia Shellfish Aquaculture Situation And Outlook Report : Results Of The 2016 Virginia Shellfish Aquaculture Crop Reporting Survey, Karen Hudson

Reports

The hatchery-based shellfish aquaculture industry in Virginia continues to grow adding significant value to the Commonwealth's seafood marketplace. Today, watermen harvest both hard clams and oysters from the Commonwealth's public resources,albeit at rates diminished from historic levels. At the same time, Virginia's watermen-farmers, utilizing production from a land-based hatchery, are providing additional quantities of quality shellfish to consumers.

This survey, in its 11th year, is intended to continue annual assessments with which to gauge growth and inputs in Virginia's hatchery-based shellfish aquaculture industry. This report is based upon an industry survey completed during the first quarter of 2017.

While these …

Monitoring The Abundance Of American Shad And River Herring In Virginia's Rivers - 2016 Annual Report, Eric J. Hilton, Robert Latour, Patrick E. Mcgrath, Brian Watkins, Ashleigh Magee

Reports

This report describes the results of the nineteenth year of a continuing study to estimate the relative abundance and assess the status of American shad (Alosa sapidissima) stocks in Virginia by monitoring the spawning runs in the James, York and Rappahannock rivers in spring 2016, evaluating hatchery programs, and contributing to coast-wide assessments (ASMFC 2007). We also report on a new fishery-independent monitoring program using staked gillnets to determine relative abundance and stock structure for the adult spawning run of river herring (A. pseudoharengus, and A. aestivalis) in the Rappahannock River. Data are also reported from two separate fishery-independent monitoring …

Estimating Relative Abundance Of Young-Of-The-Year American Eel, Anguilla Rostrata, In The Virginia Tributaries Of Chesapeake Bay, Spring 2016, Mary C. Fabrizio, Troy D. Tuckey

Reports

American Eel (Anguilla rostrata) is a valuable commercial species along the Atlantic coast of North America from New Brunswick to Florida. In the U.S., harvests have declined, with similar patterns occurring in the Canadian Maritime Provinces (Meister and Flagg 1997). An average of 62% of the annual landings of U.S. commercial harvest since 1993 have come from the Chesapeake Bay (personal communication from the National Marine Fisheries Service, Fisheries Statistics Division, 9 February 2015). In 2013, Virginia commercial landings were approximately 100,298 lbs; since mandatory reporting began in 1993, average annual landings in Virginia have been 193,200 lbs or 19% …

Tracking Decadal Changes In Striped Bass Recruitment: A Calibration Study Of Seine Surveys In Chesapeake Bay, Mary C. Fabrizio, Troy D. Tuckey, Olivia M. Philips, Brian K. Gallagher

Reports

In this study we estimated calibration factors necessary to maintain the long‐term integrity of the juvenile striped bass surveys in the Chesapeake Bay region. These surveys provide annual indices of recruitment (estimated as juvenile fish abundance in summer) and are used by fisheries managers in Virginia and Maryland to inform adjustments of annual harvest limits for striped bass from the commercial and recreational fisheries in Chesapeake Bay. During the multi‐decadal history of the survey, a potentially influential change occurred: VIMS deployed a net (the VA net) with a mesh material that differed from the standard net that MD DNR continued …

Associated Dataset: Assimilating Bio-Optical Glider Data During A Phytoplankton Bloom In The Southern Ross Sea, Daniel E. Kaufman, Marjorie A.M. Friedrichs, John C.P. Hemmings, Walker O. Smith

Data

No abstract provided.

Ecosystem Services Of Restored Oyster Reefs In A Chesapeake Bay Tributary: Abundance And Foraging Of Estuarine Fishes, Bruce William Pfirrmann

Dissertations, Theses, and Masters Projects

Oyster reef restoration may enhance the production of ecologically or economically important fish species, an ecosystem service, by providing refuge and foraging habitat. Predicting the effects of oyster habitat restoration on fisheries production in Chesapeake Bay requires a better understanding of fish habitat use, trophic dynamics, and the processes leading to production on a habitat-scale. The objective of this thesis was to evaluate the influence of restored subtidal oyster reefs on the abundance and foraging patterns of mobile estuarine fishes. Specifically, I compared the 1) abundance, 2) stomach fullness, 3) diet composition, and 4) daily consumption rate of fishes collected …

Assessment Of Critical Habitats For Recovering The Chesapeake Bay Atlantic Sturgeon Distinct Population Segment, Bob Greenlee, David H. Secor, Greg C. Garman, Matthew Balazak, Eric J. Hilton, Matthew T. Fisher

Reports

The states of Virginia and Maryland along with Virginia Commonwealth University (VCU), Virginia Institute of Marine Science (VIMS) and University of Maryland Center for Environmental Science (UMCES) partnered to assess critical habitat for recovering the Chesapeake Bay Atlantic sturgeon (Acipenser oxyrinchus oxyrinchus) distinct population segment. The primary objectives were to assess reproductive habitat in the James River, nursery habitat in the James and York Rivers and the degree of dependence of those populations to habitat in the Chesapeake Bay.

Extensions And Applications Of Mean Length Mortality Estimators For Assessment Of Data-Limited Fisheries, Quang C. Huynh

Dissertations, Theses, and Masters Projects

For data-limited fisheries, length-based mortality estimators are attractive as alternatives to age-structured models due to the simpler data requirements and ease of use of the former. This dissertation develops new extensions of mean length-based mortality estimators and applies them to federally-managed stocks in the southeastern U.S. and U.S. Caribbean.

Chapter 1 presents a review of length-based methods from the literature. Common themes regarding the methodology, assumptions, and diagnostics in these length-based methods are discussed. In Chapter 2, a simulation study evaluates the performance of the length-converted catch curve (LCCC), Beverton-Holt equation (BHE), and Length Based-Spawner Potential Ratio (LB-SPR) over a …

The Status Of Virginia's Public Oyster Resource 2016, Melissa Southworth, Roger L. Mann

Reports

This report summarizes data collected during 2016 in the Virginia portion of the Chesapeake Bay. The report is composed of two parts, part one, oyster recruitment (shell string) in Virginia and part two, dredge survey of selected oyster bars in Virginia.

Assessing Ecological And Economic Effects Of Derelict Fishing Gear: A Guiding Framework, Christopher F.G. Jeffrey, Kirk J. Havens, H. Ward Slacum Jr., Donna Marie Bilkovic, Danielle Zaveta, Andrew M. Scheld, Sean Willard, John D. Evans

Reports

Developing standardized protocols to assess the ecological and socio-economic effects of marine debris – especially, derelict fishing gear – is critical for the protection of natural resources and for evaluating policies and programs designed to reduce and remove debris. This document outlines a Derelict Fishing Gear Assessment Framework to guide the development and implementation of derelict gear assessment, management and mitigation. The framework draws from techniques and protocols developed to assess derelict crab traps effects in the Chesapeake Bay and on past derelict gear assessments either conducted by or known to the framework authors. However, this framework is generalized and …

Ecological And Economic Effects Of Derelict Fishing Gear In The Chesapeake Bay 2015/2016 Final Assessment Report, Donna M. Bilkovic, H. Ward Slacum Jr., Kirk J. Havens, Danielle Zaveta, Christopher F.G. Jeffrey, Andrew M. Scheld, David Stanhope, Kory Angstadt, John D. Evans

Reports

Derelict fishing gear represents a major challenge to marine resource management: whether through deliberate abandonment or through accidental loss, derelict traps in particular have significant negative effects both economic (e.g., reduced fishery harvest from ghost fishing and gear competition that leads to the reduced efficiency of active gear) and ecological (e.g., degraded habitats and marine food webs and crab and bycatch mortality). Throughout the Chesapeake Bay, commercial harvest of hard-shelled blue crabs is a major fishing activity: every year sees the deployment of several hundred thousand blue crab traps (known locally as crab “pots”) across the Bay, of which an …

Integrated Assessment Of Oyster Reef Ecosystem Services: Macrofauna Utilization Of Restored Oyster Reefs, M. Lisa Kellogg, Kennedy T. Paynter, Paige G. Ross, Jennifer C. Dreyer, Cate Turner, Manisha Pant, Alan Birch, Edward Smith

Reports

Within the Harris Creek Oyster Sanctuary in the Maryland portion of Chesapeake Bay, we evaluated relationships between basic oyster reef characteristics and the abundance and biomass of macrofauna. The eight sites selected for these studies included five restored oyster reef sites and three sites suitable for restoration that had not been restored. These sites encompassed a range of oyster biomass density and were spread throughout the sanctuary area. At each site one month prior to each of four sampling periods, divers filled four wire mesh baskets (0.1m2 surface area x 15 cm depth) with material from the site and embedded …

Virginia Game Fish Tagging Program Annual Report 2015, Susanna Musick, Lewis Gillingham

Reports

Through 2015, the Virginia Game Fish Tagging Program has maintained a 20-year database of records for tagged and recaptured fish. The program is a cooperative project of the Virginia Saltwater Fishing Tournament (under the Virginia Marine Resources Commission-VMRC) and the Virginia Institute of Marine Science (VIMS) of the College of William and Mary (under the VIMS Marine Advisory Program).

Monitoring Relative Abundance Of American Shad And River Herring In Virginia Rivers 2015 Annual Report, Eric J. Hilton, Robert Latour, Patrick E. Mcgrath, Brian Watkins, Ashleigh Magee

Reports

Concern about the decline in landings of American shad (Alosa sapidissima) along the Atlantic coast prompted the development of an interstate fisheries management plan (FMP) under the auspices of the Atlantic States Marine Fisheries Management Program (ASMFC 1999). Legislation enables imposition of federal sanctions on fishing in those states that fail to comply with the FMP. To be in compliance, coastal states are required to implement and maintain fishery-dependent and fishery-independent monitoring programs as specified by the FMP. For Virginia, these requirements include spawning stock assessments, the collection of biological data on the spawning run (e.g., age-structure, sex ratio, and …

Integrated Assessment Of Oyster Reef Ecosystem Services: Fish And Crustacean Utilization And Trophic Linkages, M. Lisa Kellogg, Paige G. Ross, Mark Luckenbach, Jennifer C. Dreyer, Manisha Pant, Alan Birch, Sean Fate, Edward Smith, Kennedy Paynter

Reports

Using a regression design that encompassed the continuum of oyster reef biomass density in Harris Creek, MD, from unrestored reefs to those restored reefs with the greatest oyster biomass, we examined finfish and crustacean utilization of these habitats. Of the eight sites studied, three had not been subject to any restoration activities and five had been planted in 2012 with juvenile oysters set on oyster shell. All sites were sampled in April, June, August, and October 2015. During each sampling period, we assessed abundance, total length and biomass of finfish and examined gut contents to assess the diets of selected …

Virginia Shellfish Aquaculture Situation And Outlook Report : Results Of The 2015 Virginia Shellfish Aquaculture Crop Reporting Survey, Karen Hudson, Thomas J. Murrary

Reports

The hatchery-based shellfish aquaculture industry in Virginia continues to grow adding significant value to the Commonwealth’s seafood marketplace. Today, watermen harvest both hard clams and oysters from the Commonwealth’s public resources, albeit at rates diminished from historic levels. At the same time, Virginia’s watermen-farmers, utilizing production from a land-based hatchery, are providing additional quantities of quality shellfish to consumers. This survey, in its 10th year, is intended to continue annual assessments with which to gauge growth and inputs in Virginia’s hatchery-based shellfish aquaculture industry. This report is based upon an industry survey completed during the first quarter of 2016. While …

A Sonic Net Excludes Birds From An Airfield: Implications For Reducing Bird Strike And Crop Losses, John P. Swaddle, Dana L. Moseley, Mark H. Hinders, Elizabeth P. Smith

Arts & Sciences Articles

Collisions between birds and aircraft cause billions of dollars of damages annually to civil, commercial, and military aviation. Yet technology to reduce bird strike is not generally effective, especially over longer time periods. Previous information from our lab indicated that filling an area with acoustic noise, which masks important communication channels for birds, can displace European Starlings (Sturnus vulgaris) from food sources. Here we deployed a spatially controlled noise (termed a “sonic net”), designed to overlap with the frequency range of bird vocalizations, at an airfield. By conducting point counts, we monitored the presence of birds for four …

The Dilemma Of Derelict Gear: Datasets, Andrew M. Scheld, Donna M. Bilkovic, Kirk J. Havens

Data

No abstract provided.

Influence Of Structural Complexity And Location On The Habitat Value Of Restored Oyster Reefs, Melissa Ann Karp

Dissertations, Theses, and Masters Projects

In the Chesapeake Bay, < 1% of the historic oyster population remains, and efforts have been increasing to restore oysters and the services they provide. Building reefs that successfully provide ecosystem services–especially habitat and foraging grounds–may require different restoration techniques than those previously used, and success may depend on reef morphology (complexity), location, and environmental conditions. Salinity and habitat complexity are two important factors that may interact to effect benthic communities and predator-prey interactions on restored reefs. The goals of this project were: (1) Characterize the benthic communities on restored oyster reefs in lower Chesapeake Bay, and (2) examine the effects of structural complexity and salinity on benthic communities and predator-prey interactions. A two-year field survey of restored reefs was carried out in four rivers in lower Chesapeake Bay to characterize faunal communities on restored reefs and to quantify the effect of reef complexity on faunal communities. A laboratory mesocosm experiment was conducted to examine the effect of reef complexity on predator foraging. In total, 61 macrofaunal species were identified among all samples, and restored reefs supported on average, 6,169 org/m2 and 67.88 g-AFDW/m2. There were significant differences in the community composition and diversity among the rivers, and salinity was the environmental factor that best explained the observed differences in species composition across the rivers. Salinity and rugosity (i.e., structural complexity) both positively affected diversity, while salinity negatively affected macrofaunal abundance and biomass. Oyster density and rugosity positively affected macrofaunal biomass, and oyster density positively affected mud crab, polychaete, and mussel densities. In the mesocosm experiment, predator foraging, measured by proportion and number of prey consumed, was significantly reduced in the presence of oyster shell structure. However, predators were able to consume more prey when prey density was increased, even in the presence of oyster shell structure. These results combine to enhance our understanding of the benefits of increased habitat complexity for both prey and predators on restored oyster reefs. Increasing complexity worked to increase the abundance, biomass, and diversity of organisms inhabiting restored reefs, and even though predator consumption was reduced in the presence of structure compared to non-structured habitat, predators were able to consume more prey individuals when prey density was increased. Therefore, increasing the structure of oyster reef habitat may benefit prey species by providing refuge habitat, and benefit predators by providing an increased abundance of available prey items.

Influence Of Perkinsus Marinus Infection And Oyster Health On Levels Of Human-Pathogenic Vibrios In Oysters, Lydia M. Bienlien

Dissertations, Theses, and Masters Projects

The eastern oyster Crassostrea virginica is an ecologically and commercially important species whose natural populations have been devastated by overharvesting, habitat destruction, and disease, but the rapid growth of oyster aquaculture has shown potential to restore the economic significance of this species. A key threat to the growth and sustainability of oyster aquaculture is the association of human-pathogenic Vibrio bacteria with product marketed for raw consumption. Two Vibrio species, Vibrio vulnificus and Vibrio parahaemolyticus, are the causes of the highest rates of seafood consumption-related mortality and gastrointestinal illness, respectively. Identification of the factors influencing V. vulnificus and V. parahaemolyticus prevalence …

The Effects Of Drifting Fish Aggregating Devices On Bycatch In The Tropical Tuna Purse Seine Fisheries In The Atlantic And Indian Oceans, Julia Snouck-Hurgronje

Dissertations, Theses, and Masters Projects

Thousands of floating objects, known as drifting fish aggregating devices (dFADs), are released every year by commercial tropical tuna purse seine vessels in the three equatorial oceans to aggregate tuna and increase catch. The escalation in the number of dFADs deployed over the last three decades has caused changes in fishing effort that are poorly reflected in traditional indices of purse seine effort and catch per unit of effort (CPUE). In addition, concerns have been raised regarding the impacts of such high numbers of dFADs being deployed on both catch and bycatch species. I studied two aspects of dFAD deployments …

The Status Of Virginia's Public Oyster Resource 2015, Melissa Southworth, Roger L. Mann

Reports

This report summarizes data collected during 2015 in the Virginia portion of the Chesapeake Bay. The report is composed of two parts, part one, oyster recruitment (shell string) in Virginia and part two, dredge survey of selected oyster bars in Virginia.

Evaluating Recruitment Of American Eel, Anguilla Rostrata, In The Potomac River (Spring 2016), Troy D. Tuckey, Mary C. Fabrizio

Reports

American Eel (Anguilla rostrata) is a valuable commercial species along the Atlantic coast of North America from New Brunswick to Florida. Landings from Chesapeake Bay typically represent 60% of the annual United States commercial harvest (ASMFC 2012). American Eel is also important to the recreational fishery as it is often used live as bait for Striped Bass (Morone saxatilis) and Cobia (Rachycentron canadum). In 2012, Chesapeake Bay commercial landings of American Eel (771,536 lbs) were 72% of the U.S. landings (personal communication from the National Marine Fisheries Service, Fisheries Statistics Division). Since the 1980s, harvest along the U.S. Atlantic Coast …

Re-Emergence Of The Harmful Algal Bloom Species Alexandrium Monilatum In The Chesapeake Bay: Assessing Bloom Dynamics And Potential Health Impacts, Sarah K.D. Pease, Kimberly S. Reece, Wolfgang K. Vogelbein

Presentations

Effective management of harmful algal blooms (HABs) within a region requires an understanding of species-specific HAB spatial and temporal distributions, bloom dynamics, as well as potential health impacts. In 2007, the southern Chesapeake Bay witnessed its first blooms of the HAB species Alexandrium monilatum. Since then, A. monilatum has bloomed in the region almost annually. A. monilatum produces the toxin ‘goniodomin A’ and is suspected in local mass mortalities of oyster larvae (Crassostrea virginica) grown for aquaculture and restoration projects. Representatives from Virginia’s multimillion dollar oyster aquaculture industry recently expressed great concern over A. monilatum impacts to their businesses; field …