Biosecurity Commons^™

Understanding Agricultural Irrigation Practices Along Utah's Wasatch Front Through Farmer-Reported Data, Garland Ledbetter

All Graduate Theses and Dissertations, Fall 2023 to Present

Water is a growing concern in Utah, especially along the Wasatch Front, where cities, farms, and communities all rely on the same limited water supply. Agriculture uses a large portion of the state’s water, so understanding how farms manage irrigation is important for statewide water planning. Utah currently uses a dataset called Water-Related Land Use (WRLU) to estimate agricultural water use across the state. This dataset provides useful information about irrigated land and crop types. However, it does not capture many of the day-to-day decisions farmers make when managing irrigation.

To better understand irrigation practices, this study surveyed 61 farmers …

Towards Improved Stress Resilience, Optimal Growth And Enhanced Biosafety In Transgenic Plants, Xiaotong Chen

All Dissertations

This dissertation investigates biotechnology strategies to improve plant stress resilience, growth, and biosafety in transgenic perennial grasses using creeping bentgrass as a model system. Functional analyses of non-coding RNAs such as miR164 and miR169 showed that regulatory non-coding RNAs influence plant architecture and abiotic stress responses through broad developmental and transcriptional networks, supporting them as valuable engineering targets for complex trait improvement. The dissertation also developed a dual recombinase platform for transgene containment and removal, linking trait engineering with biosafety control. Additionally, the recombinases themselves were examined for their potential impact on heterologous host and were found to reshape plant …

Wake-On-Anomaly Federated Architecture For Privacy-Preserving Poultry Health Early Warning, Mahmoud Aziz Louati

Masters Theses

Highly pathogenic avian influenza outbreaks, respiratory disease, heat stress, and silent equipment failures share one operational reality: they are detected too late because today’s poultry-health workflow is reactive, manual, and dependent on producers volunteering commercially sensitive data. This thesis presents a wake-on-anomaly federated architecture that addresses both the detection-latency problem and the privacy–adoption deadlock that has so far prevented cross-farm collaboration. The architecture is organized in two tiers. Tier 1 is a lightweight LSTM autoencoder that continuously screens four routine telemetry channels (water, feed, house temperature, activity proxy) and emits a per-window reconstruction-error score. A debounced k-of-m trigger with cooldown …

The Impact Staphylococcus Aureus Has On Conventional And Organic Dairy Herds In New Hampshire And New York, Jacqueline Rose Holmes

Honors Theses and Capstones

Staphylococcus aureus is a potentially virulent bacterium that causes mastitis in dairy cattle. The toxins produced from S. aureus impact host immunity, damage the mammary gland, and can adapt to cause antimicrobial resistance. It is important to manage both organic and conventional farms correctly by practicing proper hygiene while milking and providing a clean environment. There is a significant increase of S. aureus cases on organic farms compared to conventional, so there may be ways in which organic management and treatment options could be altered to reduce economic loss and animal suffering. The thesis focuses on the involvement S. aureus …

Improving The Land Trust Model’S Impact On Environmental Conservation In Northern California, Peter Talbot

Master's Projects and Capstones

For years, the land trust sector of California and much of the United States has operated with a dollars and acres mentality that has prioritized fundraising as a result of acreage protected. Within California, nearly 5.8 million acres of land have been protected by 132 land trusts throughout the state. To accommodate for the diverse cross-section of land and the many needs of the population, land trusts take on numerous shapes and sizes. A unique aspect of this diversity is the rich agricultural and natural spaces found throughout the state. This mix of land and variety of land uses has …

Evaluation Of Heat Tolerant Cauliflower Varieties On California’S Central Coast, Lauren Booke

Master of Science in Environmental Sciences and Management Projects

Heat tolerant trials of vegetable crops will help to improve food security when it becomes affected by rising temperatures due to climate change. By having heat tolerant vegetable crops, we can ensure the well-being of individuals in our society—nutritionally, economically, and socially. California is responsible for 90% of the cauliflower production in the United States. This research aims to determine the overall productivity of three heat tolerant cauliflower varieties (Bishop, Mardi, Flame Star) during the summer months (July- September) on California’s central coast. Stomatal conductance and chlorophyll fluorescence were measured throughout the growing cycle to evaluate plant stress and photosynthetic …

Climate Adaptation And Water Conservation Decision-Making In Paso Robles, California Vineyards, Christopher Klier

Master of Science in Environmental Sciences and Management Projects

This paper examines vineyard perceptions and adoption of climate change adaptation and water conservation measures in the Paso Robles American Viticultural Area (AVA). A survey was distributed to all 220 vineyards and vineyard management companies that operate in the AVA, with a 53.64% response rate. The objective of the survey was to determine vineyard manager and owner attitudes towards climate change and adaptation, as well as their perceptions of how these threats would impact their operation. A second objective was to document the current level of water conservation and climate adaptation while identifying the barriers and opportunities for further adoption …

Incidence And Prevalence Of Francisella Noatunensis Subsp. Orientalis (Fno) Pathogenic Infections In Feral Hawaiian Tilapia, Daquille Peppers

Biology Theses

Aquaculture has become a major food source for many countries and continues to grow each year. However, many of the fishes that are farmed are susceptible to pathogenic infections such as Francisellosis, a bacterial infection that contributes to disease and high mortality rate in many populations of farmed and wild fish around the world. In 1994, feral and farmed populations of tilapia (e.g. Oreochromis mossambicus) on Oahu, Hawaii were found to be infected with a novel Francisellosis strain, Francisella noatunensis subsp. orientalis (Fno). To prevent the spread of this pathogen, the Hawaii Department of Aquaculture (HDOA) initiated …

Effectiveness Of Windrow Composting Methodology In Killing A Thermo-Tolerant Species Of Salmonella During Mortality Composting, Spencer Gabriel Myers

Master's Theses

In a large agricultural operation, such as the one at Cal Poly San Luis Obispo, disposal of deceased animals is an immense issue. The cost of transporting and rendering every dead animal is inhibitory to the general function of the agricultural operations and their thin budget. Therefore, we propose that composting mortalities could be an economical alternative. Composting is a recognized method for taking animal waste products along with carbon waste and turning it into a pathogen-free, nutrient-rich topsoil. Carcass composting is in fact performed in other countries and states to varying degrees of success. However, the California EPA limits …

Radical Social Ecology As Deep Pragmatism: A Call To The Abolition Of Systemic Dissonance And The Minimization Of Entropic Chaos, Arielle Brender

Student Theses 2015-Present

This paper aims to shed light on the dissonance caused by the superimposition of Dominant Human Systems on Natural Systems. I highlight the synthetic nature of Dominant Human Systems as egoic and linguistic phenomenon manufactured by a mere portion of the human population, which renders them inherently oppressive unto peoples and landscapes whose wisdom were barred from the design process. In pursuing a radical pragmatic approach to mending the simultaneous oppression and destruction of the human being and the earth, I highlight the necessity of minimizing entropic chaos caused by excess energy expenditure, an essential feature of systems that aim …

Effect Of Increasing Levels Of Monosilicic Acid On Arsenic And Phosphorus Sorption In Soil, Flávia Bastos Agostinho

LSU Doctoral Dissertations

Arsenic (As) accumulation in rice (Oryza sativa) grains has increased human’s daily intake. Studies have shown that arsenite is taken up through known silicon (Si) transporters in rice. Moreover, the availability of As in soil is affected by chemically similar ligands that have high affinity to oxides surfaces, such as Si and phosphorus (P). Studies were conducted to: (I) investigate the role of elevated levels of Si on the concentration of different As fractions in soil and on As uptake by rice; (II) evaluate the effect of increasing monosilicic acidconcentrations on As sorption and kinetics in soil; and …

Sustainability At Sit: A Look At The Past, A Plan For The Future, Taliesin Haugh

Capstone Collection

Climate change threatens our world and way of life. Intelligent development and investment could mitigate the worst threats of climate change, while simultaneously providing continuous growth for the global economy. The New Climate Economy proposes efforts to combat this ecological collapse that would result in $30 trillion in new annual economic growth by 2030. Stockholm Resilience Center agrees, giving a framework based on global ecological systems that calls for five critical tasks that can bring growth and stability: Renewable energy

Sustainable local food production

New development models, based on what has worked globally

Reduction of wealth inequity

Education, health, and …

"Squeezed Between The Gunshots And The Gentrifiers”: Urban Agriculture In Philadelphia's Kensington Neighborhood, Arianna Hall-Reinhard

Graduate Theses, Dissertations, and Problem Reports (ETD)

Urban agriculture (UA) is part of the broader alternative food movement and a potential avenue through which to “do” food justice work. UA projects in the urban Global North are frequently motivated by social and food justice goals. Despite these guiding ideals, UA projects in America are rife with internal contradictions, including those related to racial inequalities, complex gentrification dynamics, and funding realities. In this paper, I employ the conceptual frameworks of food justice and urban political ecology to consider how gentrification and UA project funding structures affect five specific UA projects in Philadelphia’s Kensington neighborhood. While the loss of …

Evaluation Of Different Probiotic Strains Supplemented In Commercial Broiler Rations And Their Influences On Performance, Yield, And Intestinal Microbiota., Justin M. Glasscock

Electronic Theses and Dissertations

The objective of this study was to evaluate Bacillus megaterium, Bacillus licheniformis, and Bacillus subtilis, as probiotic strains compared to Bacitracin Methylene Disalicylate (BMD) 50 as the antibiotic growth promotor, supplemented in commercial broiler rations and their influences on performance, yield, and intestinal microbiota. This trial was completed as a randomized-block design with 4,800 birds split into 96, 5’x10’ pens, and randomly assigned to one of eight treatment groups. The birds were placed at a stocking density of 1.00 ft²/bird, (50 birds/pen), and reared on used pine shaving for 55 days. Throughout the study, bird …

Adaptive Strategies In A Slow-Motion Apocalypse, Allana Ross

Graduate School of Art Theses

Nature is a construct inherited from Enlightenment thought. Our culture of nature—the way we construct, teach, communicate and perpetuate our concept of nature—has furthered the false dichotomy of an untamed nature versus a resource-consuming culture. This dualistic thinking has facilitated the current environmental crisis. We thus need a new culture of nature and a system of re-education that enables a symbiotic relationship between ourselves and our environment. A re-negotiation of this relationship is imperative to our continued survival on this planet; thus a reformation of the culture of nature can be viewed as an adaptive strategy. Systems-focused ecological art practice …

Exploration Of Chemical And Biological Management Strategies For Diaphorina Citri The Primary Vector Of Candidatus Liberibacter Asiaticus, Gretta Marie Sharp

Biology Theses

Diaphorina citri (Hemipteran: Psyllidae), the Asian citrus psyllid, is a phloem-feeding, invasive species endemic to southern Asia that was first identified in the United States in Florida in 1998. Since introduction, D. citri has spread across the major citrus growing regions of the United States. This is of great concern to the citrus industry because D. citri is the primary vector of Candidatus Liberibacter asiaticus the causal agent of Haunglongbing (HLB). Haunglongbing is the most economically devastating disease of citrus causing an estimated 8.92 billion dollars lost in revenue and 4.62 billion dollars lost in gross domestic product between 2006-2007 …

Design And Testing Of Novel Anthrax Vaccines Utilizing A Tobacco Mosaic Virus Expression System, Ryan C. Mccomb

KGI Theses and Dissertations

Anthrax is a potentially fatal disease caused by the bacteria Bacillus anthracis. Infection and disease occur after spores gain entry into the body, germinate into vegetative bacteria, and produce toxin. Bacillus anthracis spores have been engineered as bioweapons and have been used repeatedly in warfare and terrorism to inflict casualties in military and civilian populations. Currently, only one vaccine has been approved for prevention of anthrax in the United States. This vaccine is an undefined product that is difficult to produce, requires a long vaccination schedule, and is reactogenic. Efforts to make an improved anthrax vaccine are being pursued. …

Food Apocalypse Now: An Epistemological Understanding Of The Coming Food Crisis, Alexander Sk Parker 15

Honor Scholar Theses

No abstract provided.

Alfalfa Weevil, Hypera Postica (Gyllenhal), (Coleoptera: Curculionidae) Response To Environmental Factors In Alfalfa Fields In Northern Utah, Larry Edward Jech

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Economic damage to forage alfalfa by the alfalfa weevil occurs frequently enough in northern Utah to warrant applications of an insecticide in some years but not all. Currently a five to ten day period is available to recognize injurious populations then make applications.

Sticky boards, pitfall traps, Berlese funnels sweep samples, stem bouquets, climatic variation and marking techniques were evaluated for alfalfa weevil population predictions. The prevailing climate was the most important factor controlling early adult activities. Early adult feeding and sexual development was the key to forecasting later larval populations. Regional surveys were not adequate for local control recommendations. …