Agriculture Commons^™

Synthetic-Chicken-Fillets, Chirantan Sen Mukherjee, Seung-Chul Yoon, William J. Beksi

Agriculture

This Synthetic-Chicken-Fillets dataset contains 1,000 synthetic 3D meshes designed to capture the natural variance and size diversity of real broiler fillets. The collection was developed to test automated woody breast detection algorithms within a physics-based simulation environment. We utilized a seed dataset of 2D depth maps derived from 40 real-world RGBD point cloud scans. These real depth maps were fed into a few-shot transfer learning pipeline using a generative adversarial network architecture. The resulting generated depth maps were reconstructed back into 3D meshes. The length and thickness of each mesh were randomly scaled based on physical measurements of real broiler …

3dcotton, Md Ahmed Al Muzaddid, William J. Beksi

Agriculture - Archive

3DCotton is an image dataset consisting of 8 cotton plants recorded at the Texas A&M University Research Farm. The images were captured using an Apple iPhone at a resolution of 1040x1920 pixels. Approximately 150 images per plant were taken from a distance of 1 m by recording multiple viewpoints. These images can be utilized for developing 3D reconstruction methods.

Applied Reproductive Science: Technology, Ethics, And Management In Modern Animal Systems, Hagan Beach

Publications

This creative component course development project includes five (5) supplementary lessons focused on animal welfare concerns in livestock reproduction, biological foundations of ethical animal reproduction, responsible use of reproductive technology, ethical reproductive management, and ethical breeding decisions in livestock genetics. This resource also includes a teacher guide, supplementary instructional materials, assessment materials, implementation guidance, and reflection sections.

Together, these components give teachers a usable set of lessons and support materials for bringing ethical decision-making into animal science instruction. Although each lesson can stand on its own, the sequence was arranged to move from foundational reproductive science into more applied questions …

National-Scale Open Cattle Feedlot Detection Using Deep Learning And High-Resolution Aerial Images: Spatial Distribution And Animal Welfare Analysis, Uilson Ricardo Venancio Aires, Vitor Souza Martins, Dakota Hester, Thainara Lima, Lucas Borges Ferreira

Research Data

Open cattle feedlots are a major form of beef production infrastructure in the United States, characterized by outdoor confinement, high animal densities, and regulated feeding practices. Despite their economic importance, a comprehensive and spatially consistent national database of these facilities remains limited. This dataset provides labeled training data, trained deep learning models, and geospatial detection outputs developed to support automated identification of open cattle feedlots from aerial imagery. The dataset includes a manually curated shapefile of 11,746 open cattle feedlot facilities identified through visual interpretation of high-resolution aerial imagery in highly productive counties of Nebraska, Kansas, and Texas. These labels …

Dataset Supporting The Manuscript Promoting Awareness And Adoption Of Biochar As A Soil Amendment: Effect Of Message Framing, Tong Wang, David Wiltse, Filip Viskupic, Akinsola Oyebanji

South Dakota Farm Survey

A farmer survey was conducted from February 22nd to March 9th, 2025 to test the impact of message framing on farmers’ learning and adoption decisions of biochar. The survey targeted operators of farms in Eastern South Dakota where the production of corn requires chemical fertilizer is intensively used as a crucial input. Biochar as a soil amendment has the potential to serve as a partial substitute for chemical fertilizer in our studied region. A sample of 10,000 South Dakota farming operations east of the Missouri River (where climate favors row crop production) was randomly drawn from those who participated in …

Weed Incursion Of Irrigated Forage–Forb Mixtures Under Mob Grazing Or Mowing In The Mountain West Usa, Jennifer Macadam, Jared Gibbons, Xin Dai

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Improving the quality of irrigated pastures can increase the profitability of ruminant production systems. Increasing pasture plant biodiversity is beneficial for ruminants, pollinators, and soil health, but it is challenging to manage weed incursion in seeded mixed-species pastures. This study assessed the weed incursion that resulted when forage legumes or grasses were seeded as binary mixtures with one of four non-legume forbs. Defoliation occurred at 6-week intervals as either mowing or mob grazing. Forbs were chicory, plantain, Lewis flax, or small burnet and forages were alfalfa, birdsfoot trefoil, creeping foxtail, intermediate wheatgrass, kura clover, meadow bromegrass, orchardgrass, perennial ryegrass, reed …

Pesticide Runoff From Conventional, Minimum, And No-Tillage Cropping Systems: Meta-Analysis Of Published North American Data, Daniel Fleming, Dave Spencer, Chicot Irrigation

WRRI Publications

Pesticide applications may soon be regulated by laws predicated on the presupposition that reducing tillage, and thereby increasing soil surface crop residue cover, decreases sorbed and soluble agrochemical losses in surface runoff and erosion. This analysis was conducted to determine whether pesticide transport via surface runoff and erosion could be manipulated by tillage practices. Estimates of the amounts of crop residue cover within each tillage practice were averaged from data reported in the original articles. Response ratios of the paired means of runoff, erosion, and pesticide losses and concentrations from the effects of tillage practices were meta-analyzed as paired t-tests …

Tree Rings Reveal Mixtures Of Aspen And Spruce Exhibit Greater Drought Resilience In A Planted Field Experiment, Jéssica Chaves Cardoso, Linhao Wu, Marcel Schneider, Charles A. Nock

Aspen Bibliography

Boreal forests provide a wealth of ecosystem services, many of which are linked to forest productivity. Climate change is expected to increase the frequency, duration, and severity of drought, and undermine the productivity of western boreal forests. Favouring species mixtures has emerged as a potential strategy to increase forest resilience to drought. To test the hypothesis that mixtures of trembling aspen and white spruce were more productive than pure stands because they were more resistant and resilient to drought, we analyzed community and species responses to drought utilizing measurements of annual growth obtained from stem disc samples from a planted …

Citdet, Jordan A. James, Heather K. Manching, Matthew R. Mattia, Kim D. Bowman, Amanda M. Hulse-Kemp, William J. Beksi

Computer Science and Engineering Datasets - Archive

The CitDet dataset is composed of images captured at the USDA Agricultural Research Service Subtropical Insects and Horticulture Research Unit in Fort Pierce, FL, USA. Data was collected between October 2021 and October 2022. 579 images were captured from different sections of the orchard using the open-source application Field Book on Android tablets. While collecting images, we faced the camera in a portrait orientation directly centered on the tree of interest. All images were taken at the edge of the soil in the tree row to simulate a ground-based robot imaging the tree while moving between two rows of trees. …

Texcot22, Md Ahmed Al Muzaddid, William J. Beksi

Computer Science and Engineering Datasets - Archive

The TexCot22 dataset is a set of cotton crop video sequences for training and testing multi-object tracking methods. Each tracking sequence is 10 to 20 seconds in length. The dataset contains of a total of 30 sequences of which 17 are for training and the remaining 13 are for testing. Among the training sequences, 2 of them consist of roughly 5,000 annotated images, which can be used to train a cotton boll detection model. The video sequences were captured at 4K resolution and at distinct frame rates (e.g., 10, 15, 30). There are typically 2 to 10 cotton bolls per …

A Bayesian Approach To The Analysis Of Dose-Response Data: Estimating Natural Survivorship Without Abbott’S Correction And Inclusion Of Overdispersion Estimates, Michael A. Caprio, Jose B. Malaquias, Dominic Reisig

CALS Publications

We assessed the utility of a Bayesian analysis of dose-mortality curves using probit analysis. A Bayesian equivalent of a conventional single population probit analysis using Abbott’s correction demonstrated the ability of the Bayesian model to recover parameters from generative data. We then developed a model that removed Abbott’s correction and estimated natural survivorship as part of the overall model fitting process. Based on WAIC (information content) scores, this model was selected over the model using Abbott’s corrected data in 196 out of 200 randomly generated datasets. This suggests that considerable information on control survivorship exists in the response to treated …

Laurentian Great Lakes Warming Threatens Northern Fruit Belt Refugia, Robert Warren

Biology Faculty Datasets

Climate refugia are anomalous ‘pockets’ of spatially or temporally disjunct environmental conditions that buffer distinct flora and fauna against prevailing climatic conditions. Physiographic landscape features, such as large water bodies, can create these micro-to-macro-scale terrestrial habitats, such as the prevailing westerly winds across the Laurentian Great Lakes that create relatively cooler leeward conditions in spring and relatively warmer leeward conditions in autumn. The leeward Great Lakes climate effects create a refugia (popularly known as a ‘fruit belt’) favorable for fruit-bearing trees and shrubs. This fruit belt refugia owes its existence to seasonal inversions whereby spring cooling prevents early flower budding …

Data From: Yellow Air Day Advisory Study, Arthur J. Caplan

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Using a dataset consisting of daily vehicle trips, PM2.5 concentrations, along with a host of climactic control variables, we test the hypothesis that “yellow air day” advisories provided by the Utah Division of Air Quality resulted in subsequent reductions in vehicle trips taken during northern Utah’s winter-inversion seasons in the early 2000s. Winter inversions occur in northern Utah when climactic conditions are such that PM2.5 concentrations (derived mainly from vehicle emissions) become trapped in the lower atmosphere, leading to unhealthy air quality (concentrations of at least 35 µg/m3) over a span of what are called “red air days”. When concentrations …

The Intersection Of Past And Present, Hannah Welzbacker

Graduate Student Portfolios, Professional Papers, and Capstone Projects

Science often faces a crossroad between the past and present. Ever changing technology allows us to make new discoveries while at the same time, elements from past cultures need preserving. The three stories in this portfolio all highlight the intersection of past and present and how they can coexist. The first story focuses on a technological breakthrough that allows local researchers to better understand nocturnal migrations using acoustic monitoring. The second story explains the controversial Mayan Train project moving through South America and the implications for the economy, environment and culture. The final piece captures how members of the Blackfeet …

Data For Farmland Preservation Study, Arthur J. Caplan, Brent C. Chamberlain

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This study fills a gap in cultural ecosystem service (CES) assessment of prime farmland located in peri-urban areas by presenting results from a choice experiment recently conducted in Utah’s Wasatch Front region. The choice experiment was designed to account for heterogeneous effects associated with a wide array of socio-demographic and attitudinal characteristics on household preferences for farmland preservation, including farmland used for the joint production of solar power and agricultural products. We apply a mixed-logit model to our data that controls for preference heterogeneity among Wasatch Front households along two dimensions – at the individual household level and according to …

Supporting Data - Recycling Of Nitrate And Organic Matter By Plants In The Vadose Zone Of A Saturated Riparian Buffer, Patience Bosompemaa, Eric Wade Peterson, William Perry, Wondwosen M. Seyoum

Faculty Publications - Geography, Geology, and the Environment

Data from the analysis of nitrate as nitrogen in the soil and soil pore water within the vadose zone of a saturated riparian buffer (SRB). Additional properties measured include: Organic matter (as %), bulk density, moisture content, and porosity. Soil samples were collected pre-growing season (n=57) and post-growing season from two plots (n=29): vegetated plots and barren plots. Statistical comparison of among the treatments, Pre-growing season, plot with plants, and barren plot, and among the different depths, 30 cm, 60 cm, and 90 cm identified significantly different soil NO₃^--N concentrations. Plots with plants experienced a reduction in …

Incorporating Drones In My Classroom: Survey Data From High School Teachers, Tyson Sorensen, Kelsey Hall, Olivia Horning, Joshua Dallin, David Francis

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Survey data collected from 69 High School and middle school teachers. Survey gauges intentions of integrating drone curriculum concepts into the classroom. Dataset includes summary data, raw data and survey instrument.

Data From: Wildfire, National Park Visitation, And Changes In Regional Economic Activity, Man-Keun Kim, Paul M. Jakus

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Data from the associated paper. Abstract from paper below:

The visibility, safety, and health effects of seasonal wildfires may affect recreational visits to national parks (NPs), even if fires occur outside of park boundaries. This study statistically quantifies the effect of nearby wildfire on tourist flows to each of Utah's five NPs (Arches, Bryce Canyon, Canyonlands, Capitol Reef, and Zion). Using monthly data from May 1993 to December 2015, we empirically link wildfire activities (measured as monthly area burned within 80 km, 160 km, and 320 km radii) to monthly visits to each national park. Results show that …

Wasatch Front Preventative Capital Study, Arthur Caplan, Ramjee Acharya

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We address the issue of optimal investment in “preventative capital” to mitigate episodic, mobile-source air pollution events in Utah’s Wasatch Front region. We calibrate Berry et al.'s (2015) endogenous-risk model using a unique dataset related to the region’s "red air day" episodes occurring over the past decade. Our analysis demonstrates that, under a wide range of circumstances, the optimal steady-state level of preventative capital stock – raised through the issuance of a municipal “clean air bond” that can be used to fund more aggressive mitigation efforts – meets the standard for PM2.5 concentrations with positive social net benefits. We estimate …

Evaluation And Enhancement Of Carbon Sequestration Potential Of Existing Vegetation Along Roadsides, Vikram Kapoor, Jeffrey Hutchinson, Samer Dessouky

Data

Corresponding data set for Tran-SET Project No. 18HSTSA01. Abstract of the final report is stated below for reference:

"The objectives of this study were to evaluate the vegetative composition and carbon sequestration potential of vegetation along a major roadway in Texas. Soil and vegetation were evaluated along IH-35 within Bexar County for composition and carbon content. Three 20 m transects were placed at each site and percent vegetative cover was estimated and above ground plant biomass, and soil was collected from three 0.25 m2 subplots along each transect. Plant and soil samples were analyzed for carbon content. Two non-native grasses, …

Effects Of Sowing Methods On Plant Survival, Michaela Hathaway

Scholars Week

No abstract provided.

Usu Careers In Agriculture, Forestry, Natural Resources, Grades 9-12, Tyson Sorensen, Olivia Horning, Joshua Dallin

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These are brochures (three currently have been completed) that were developed as part of this grant to promote AFNR careers among high school-aged students. These brochures were developed with a focus on careers related to Genetic Engineering and Biotechnology. The brochures were distributed to participants of the workshop and with invitations for them to also distribute the brochures to their school's career/guidance counselors. The goal of the brochures is to help students learn about and see the pathway to get to their agriculture, forestry, or natural resources career of interest.

Brochure titles:

Animal, Dairy and Veterinary Sciences (BS): Biotechnology Emphasis …

Curriculum: Careers In Urban Agriculture (Grades 7-12), Tyson Sorensen, Kelsey Hall, David Francis, Joshua Dallin

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Materials were created for school-based agricultural educators (7th-12 grade) to use for students in Utah. This curriculum covers multiple days of instruction but 3-5 (50-minute sessions) days is what it is intended for. Includes a unit plan for the instructor, presentation slides (PPT and PFD), worksheets, and other materials. This curriculum focuses on careers in urban agriculture.

Survey Data From Utah Urban Agricultural Workshop, Tyson Sorensen, Kelsey Hall, David Francis, Joshua Dallin

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Forty-two teachers who attended the Urban Agriculture Workshop were surveyed after the workshop to assess the value of various aspects of the workshop and to measure pre-post gains in knowledge, ability, and importance. Also to measure attitudes, subjective norms, perceived behavioral controls, and behavioral intention. Demographics were also collected. Data show the results. Survey Instrument is attached. Scaling varies (see instrument).

Survey Data From Ecochallenge Workshop, Tyson Sorensen, Kelsey Hall, David Francis, Joshua Dallin

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The Borich calculator analyzed the data from the EcoChallenge (Explore) workshop to determine professional development needs of educators for future workshop planning. The calculator takes into account IMPORTANCE and PERCEIVED COMPETENCE of each item and calculates Mean Weighted Discrepancy Scores (MWDS). Those are then ranked and the data shows those results. The survey instrument is attached. The workshop was student-centered but allowed for educational professionals to engage with the materials (Exploring careers in AFNR).

Curriculum: Alternative Animals In Agriculture (Grades 7-12), Tyson Sorensen, Kelsey Hall, David Francis, Joshua Dallin

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Materials were created for school-based agricultural educators (7th-12 grade) to use for students in Utah. This curriculum covers multiple days of instruction but 3-5 (50-minute sessions) days is what it is intended for. Includes a unit plan for an instructor, presentation slides (PPT and PFD), worksheets, and other materials.

High And Dry: Post-Fire Tree Seedlingestablishment In Subalpine Forestsdecreases With Post-Fire Drought Andlarge Stand-Replacing Burn Patches, Brian J. Harvey, Daniel C. Donato, Monica G. Turner

Aspen Bibliography

Aim: Climate warming and increased wildfire activity are hypothesized to catalyse biogeographical shifts, reducing the resilience of fire-prone forests world-wide. Two key mechanisms underpinning hypotheses are: (1) reduced seed availability in large stand-replacing burn patches, and (2) reduced seedling establishment/survival after post-fire drought. We tested for regional evidence consistent with these mechanisms in an extensive fire-prone forest biome by assessing post-fire tree seedling establishment, a key indicator of forest resilience.

Location: Subalpine forests, US Rocky Mountains.

Methods: We analysed post-fire tree seedling establishment from 184 field plots where stand-replacing forest fires were followed by varying post-fire climate conditions. Generalized linear …

Spreadsheets For Agricultural Economics, David L. Debertin

Agricultural Economics Textbook Gallery

Available here are spreadsheets made available by Dr. David Debertin.

Utilizing Non-Fat Dried Milk In Sheep, C. Kim Chapman

All Current Publications

No abstract provided.

Prevented Planting, Unknown Unknown

All Current Publications

No abstract provided.