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Full-Text Articles in Agriculture

Effects Of Pyric Herbivory On Prairie-Chicken (Tympanuchus Spp) Habitat, Heath D. Starns, Samuel D. Fuhlendorf, Robert D. Elmore, Dirac Twidwell, Eric T. Thacker, Torre J. Hovick, Barney Luttbeg Jun 2020

Effects Of Pyric Herbivory On Prairie-Chicken (Tympanuchus Spp) Habitat, Heath D. Starns, Samuel D. Fuhlendorf, Robert D. Elmore, Dirac Twidwell, Eric T. Thacker, Torre J. Hovick, Barney Luttbeg

Department of Agronomy and Horticulture: Faculty Publications

The reduction and simplification of grasslands has led to the decline of numerous species of grassland fauna, particularly grassland-obligate birds. Prairie-chickens (Tympanuchus spp.) are an example of obligate grassland birds that have declined throughout most of their distribution and are species of conservation concern. Pyric herbivory has been suggested as a land management strategy for enhancing prairie-chicken habitat and stabilizing declining population trends. We assessed differences in vegetation structure created by pyric herbivory compared to fire-only treatments to determine whether pyric herbivory increased habitat heterogeneity for prairie-chickens, spatially or temporally. Our study was performed at four sites in the southern …


Genomic Prediction Enhanced Sparse Testing For Multi-Environment Trials, Diego Jarquin, Reka Howard, José Crossa, Yoseph Beyene, Manje Gowda, Johannes W.R. Martini, Giovanny Covarrubias Pazaran, Juan Burgueño, Angela Pacheco, Martin Grondona, Valentin Wimmer, Boddupalli M. Prasanna Jun 2020

Genomic Prediction Enhanced Sparse Testing For Multi-Environment Trials, Diego Jarquin, Reka Howard, José Crossa, Yoseph Beyene, Manje Gowda, Johannes W.R. Martini, Giovanny Covarrubias Pazaran, Juan Burgueño, Angela Pacheco, Martin Grondona, Valentin Wimmer, Boddupalli M. Prasanna

Department of Agronomy and Horticulture: Faculty Publications

“Sparse testing” refers to reduced multi-environment breeding trials in which not all genotypes of interest are grown in each environment. Using genomic-enabled prediction and a model embracing genotype · environment interaction (GE), the non-observed genotype-in-environment combinations can be predicted. Consequently, the overall costs can be reduced and the testing capacities can be increased. The accuracy of predicting the unobserved data depends on different factors including (1) how many genotypes overlap between environments, (2) in how many environments each genotype is grown, and (3) which prediction method is used. In this research, we studied the predictive ability obtained when using a …


Irrigation, Carbon Amelioration, Nitrogen, And Stover Removal Effects On Continuous Corn, Marty Schmer, Virginia L. Jin, Richard B. Ferguson, Brian J. Wienhold Jun 2020

Irrigation, Carbon Amelioration, Nitrogen, And Stover Removal Effects On Continuous Corn, Marty Schmer, Virginia L. Jin, Richard B. Ferguson, Brian J. Wienhold

Department of Agronomy and Horticulture: Faculty Publications

Corn (Zea mays L.) residue or stover is harvested as supplemental feed for livestock and is a potential feedstock for cellulosic biofuels. Limited information is available on corn stover removal effects on grain yield under different irrigation rates, nitrogen (N) fertilizer rates, and practices to maintain soil carbon (C) and minimize soil erosion. We evaluated potential interactions between irrigation rate (full or limited), C amelioration practices (cover crop, surface-applied manure, or no amelioration practice), fertilizer N management (125 or 200 kg N ha1), and stover removal (residue removal or no residue removal), on no-till continuous corn …


Production And Selection Of Quality Protein Popcorn Hybrids Using A Novel Ranking System And Combining Ability Estimates, Leandra Parsons, Ying Ren, Abou Yobi, Preston Hurst, Ruthie Angelovici, Oscar Rodriguez, David R. Holding Jun 2020

Production And Selection Of Quality Protein Popcorn Hybrids Using A Novel Ranking System And Combining Ability Estimates, Leandra Parsons, Ying Ren, Abou Yobi, Preston Hurst, Ruthie Angelovici, Oscar Rodriguez, David R. Holding

Department of Agronomy and Horticulture: Faculty Publications

Popcorn varieties are agronomically sub-optimal and genetically limited compared to other maize subspecies. To increase genetic diversity and improve popcorn agronomics, dent germplasm has been introduced to popcorn with limited success and generally, major loss of popping. Between 2013 and 2018, 12 Quality Protein Popcorn (QPP) inbreds containing Quality Protein Maize (QPM) and popcorn germplasm were produced that maintained popping while carrying the opaque-2 allele conferring elevated kernel lysine. This is an opportune trait in the growing market for healthier snacks and a model for mining QPM traits into popcorn. We crossed QPP inbreds to explore the effects of heterosis …


Weed Control Efficacy Of Bio-Based Sprayable Mulch Films In Specialty Crop Systems, Eliott Gloeb Jun 2020

Weed Control Efficacy Of Bio-Based Sprayable Mulch Films In Specialty Crop Systems, Eliott Gloeb

Department of Agronomy and Horticulture: Dissertations, Theses, and Student Research

A sprayable bio-based mulch film (biofilm) could present a more sustainable weed management tool for specialty crop producers than conventional plastic mulch films while also offering flexibility in application patterns and timing. From 2017 to 2019, six greenhouse trials and four field trials were conducted at the University of Nebraska-Lincoln to study the effects of biofilm application on weed suppression and crop yields. Multiple application rates (0.81 L/m2 - 9.78 L/m2) and application times (prior to weed emergence and post weed emergence) were tested. Corn starch, glycerol, keratin hydrolysate, corn gluten meal, corn zein, and isolated soy …


Characterizing Variation In Nitrogen Use Efficiency In Wheat Genotypes Using Proximal Canopy Sensing For Sustainable Wheat Production, Mohammed A. Naser, Raj Khosla, Louis Longchamps, Subash Dahal May 2020

Characterizing Variation In Nitrogen Use Efficiency In Wheat Genotypes Using Proximal Canopy Sensing For Sustainable Wheat Production, Mohammed A. Naser, Raj Khosla, Louis Longchamps, Subash Dahal

Department of Agronomy and Horticulture: Faculty Publications

Global nitrogen use efficiency (NUE) for cereal production is marginal and is estimated to be about 33%. Remote sensing tools have tremendous potential for improving NUE in crops through efficient nitrogen management as well as the identification of high-NUE genotypes. The objectives of this study were (i) to identify and quantify the variation in NUE across 24 winter wheat genotypes (Triticum aestivum L.) and (ii) to determine if the normalized difference vegetation index (NDVI) could characterize the variability in NUE across wheat genotypes. This study was conducted in 2010 and 2011 in the semi-arid climate of Northeastern Colorado across dryland …


Genome Wide Association Study Reveals Plant Loci Controlling Heritability Of The Rhizosphere Microbiome, Siwen Deng, Daniel F. Caddell, Gen Xu, Lindsay Dahlen, Lorenzo Washington, Jinliang Yang, Devin Coleman-Derr May 2020

Genome Wide Association Study Reveals Plant Loci Controlling Heritability Of The Rhizosphere Microbiome, Siwen Deng, Daniel F. Caddell, Gen Xu, Lindsay Dahlen, Lorenzo Washington, Jinliang Yang, Devin Coleman-Derr

Department of Agronomy and Horticulture: Faculty Publications

Host genetics has recently been shown to be a driver of plant microbiome composition. However, identifying the underlying genetic loci controlling microbial selection remains challenging. Genome-wide association studies (GWAS) represent a potentially powerful, unbiased method to identify microbes sensitive to the host genotype and to connect them with the genetic loci that influence their colonization. Here, we conducted a population-level microbiome analysis of the rhizospheres of 200 sorghum genotypes. Using 16S rRNA amplicon sequencing, we identify rhizosphere-associated bacteria exhibiting heritable associations with plant genotype, and identify significant overlap between these lineages and heritable taxa recently identified in maize. Furthermore, we …


Assessing Approaches For Stratifying Producer Fields Based On Biophysical Attributes For Regional Yield-Gap Analysis, Spyridon Mourtzinis, Patricio Grassini, Juan I. Rattalino Edreira, José F. Andrade, Peter M. Kyveryga, Shawn P. Conley May 2020

Assessing Approaches For Stratifying Producer Fields Based On Biophysical Attributes For Regional Yield-Gap Analysis, Spyridon Mourtzinis, Patricio Grassini, Juan I. Rattalino Edreira, José F. Andrade, Peter M. Kyveryga, Shawn P. Conley

Department of Agronomy and Horticulture: Faculty Publications

Large databases containing producer field-level yield and management records can be used to identify causes of yield gaps. A relevant question is how to account for the diverse biophysical background (i.e., climate and soil) across fields and years, which can confound the effect of a given management practice on yield. Here we evaluated two approaches to group producer fields based on biophysical attributes: (i) a technology extrapolation domain spatial framework (‘TEDs’) that delineates regions with similar (long-term average) annual weather and soil water storage capacity and (ii) clusters based on field-specific soil properties and weather during each crop …


Resilience To Large, “Catastrophic” Wildfires In North America's Grassland Biome, Victoria M. Donovan, Dirac Twidwell, Daniel R. Uden, Tsegaye Tadesse, Brian D. Wardlow, Christine H. Bielski, Matthew O. Jones, Brady W. Allred, David E. Naugle, Craig R. Allen May 2020

Resilience To Large, “Catastrophic” Wildfires In North America's Grassland Biome, Victoria M. Donovan, Dirac Twidwell, Daniel R. Uden, Tsegaye Tadesse, Brian D. Wardlow, Christine H. Bielski, Matthew O. Jones, Brady W. Allred, David E. Naugle, Craig R. Allen

Department of Agronomy and Horticulture: Faculty Publications

Wildfires are ecosystem‐level drivers of structure and function in many vegetated biomes. While numerous studies have emphasized the benefits of fire to ecosystems, large wildfires have also been associated with the loss of ecosystem services and shifts in vegetation abundance. The size and number of wildfires are increasing across a number of regions, and yet the outcomes of large wildfire on vegetation at large‐scales are still largely unknown. We introduce an exhaustive analysis of wildfire‐scale vegetation response to large wildfires across North America's grassland biome. We use 18 years of a newly released vegetation data set combined with 1,390 geospatial …


Control Of Volunteer Corn In Enlist Corn And Economics Of Herbicide Programs For Weed Control In Conventional And Multiple Herbicide-Resistant Soybean Across Nebraska, Adam M. Striegel May 2020

Control Of Volunteer Corn In Enlist Corn And Economics Of Herbicide Programs For Weed Control In Conventional And Multiple Herbicide-Resistant Soybean Across Nebraska, Adam M. Striegel

Department of Agronomy and Horticulture: Dissertations, Theses, and Student Research

With commercialization of multiple herbicide-resistant corn and soybean cultivars, producers have new management options for controlling herbicide-resistant weeds and volunteer corn. Corn-on-corn production systems are common in irrigated fields in southcentral Nebraska which can create issues with volunteer corn management in corn fields. Enlist corn contains a new multiple herbicide-resistant trait providing resistance to 2,4-D choline, glyphosate, and the aryloxyphenoxypropionate (FOPs). Field experiments were conducted in 2018 and 2019 at South Central Agricultural Laboratory near Clay Center, Nebraska with the objective to evaluate ACCase-inhibiting herbicides and herbicide application timing on volunteer corn control, Enlist corn injury, and yield. Glyphosate/glufosinate-resistant corn …


Buffalograss Diversity Assessment, Collin Marshall Apr 2020

Buffalograss Diversity Assessment, Collin Marshall

Department of Agronomy and Horticulture: Dissertations, Theses, and Student Research

Buffalograss [Buchloë dactylodes (Nutt.) Engelm. syn. Bouteloua dactyloides (Nutt.) Columbus] is a low input alternative turfgrass for the Great Plains region. Buffalograss is a dioecious stoloniferous warm season grass with wide variation of valuable traits and is well adapted for use in minimal maintenance landscapes. The obligate outcrossing nature of the species and wide variation of potentially valuable traits make buffalograss a prime candidate for cultivar improvement and genetic study. Limited information is available regarding buffalograss genetics. In effort to expand genetic resources around buffalograss, we developed buffalograss derived simple sequence repeat markers from previously available transcriptomes of buffalograss …


Reaction Of Tepary Beans To Eight Virulent Races Of The Rust Pathogen That Overcomes All Known Common Bean Rust Resistance Genes, Santos Barrera Lemus, Prabin Tamang, Carlos A. Urrea, Marcial A. Pastor-Corrales Apr 2020

Reaction Of Tepary Beans To Eight Virulent Races Of The Rust Pathogen That Overcomes All Known Common Bean Rust Resistance Genes, Santos Barrera Lemus, Prabin Tamang, Carlos A. Urrea, Marcial A. Pastor-Corrales

Department of Agronomy and Horticulture: Dissertations, Theses, and Student Research

Bean rust, caused by Uromyces appendiculatus, is a major disease of common and snap bean (Phaseolus vulgaris) worldwide (Stavely, 1984). Although host resistance is an important component of rust management (Mmbaga et al., 1996), populations of the rust pathogen comprise an extensive and shifting virulence diversity that could render susceptible all known rust resistance genes in common bean. Conversely, it has been suggested that certain tepary bean (Phaseolus acutifolius) accessions are broadly resistant to bean rust (Miklas & Stavely, 1998). The objectives of this study were to verify if tepary beans are resistant to …


Extreme Fire As A Management Tool To Combat Regime Shifts In The Range Of The Endangered American Burying Beetle, Alison K. Ludwig, Daniel R. Uden, Dirac Twidwell Apr 2020

Extreme Fire As A Management Tool To Combat Regime Shifts In The Range Of The Endangered American Burying Beetle, Alison K. Ludwig, Daniel R. Uden, Dirac Twidwell

Department of Agronomy and Horticulture: Dissertations, Theses, and Student Research

This study is focused on the population of federally-endangered American burying beetles in south-central Nebraska. It is focused on changes in land cover over time and at several levels of spatial scale, and how management efforts are impacting both the beetle and a changing landscape. Our findings are applicable to a large portion of the Great Plains, which is undergoing the same shift from grassland to woodland, and to areas where the beetle is still found.


Variance Heterogeneity Genome-Wide Mapping For Cadmium In Bread Wheat Reveals Novel Genomic Loci And Epistatic Interactions, Waseem Hussain, Malachy T. Campbell, Diego Jarquin, Harkamal Walia, Gota Morota Apr 2020

Variance Heterogeneity Genome-Wide Mapping For Cadmium In Bread Wheat Reveals Novel Genomic Loci And Epistatic Interactions, Waseem Hussain, Malachy T. Campbell, Diego Jarquin, Harkamal Walia, Gota Morota

Department of Agronomy and Horticulture: Faculty Publications

Genome-wide association mapping identifies quantitative trait loci (QTL) that influence the mean differences between the marker genotypes for a given trait. While most loci influence the mean value of a trait, certain loci, known as variance heterogeneity QTL (vQTL) determine the variability of the trait instead of the mean trait value (mQTL). In the present study, we performed a variance heterogeneity genome-wide association study (vGWAS) for grain cadmium (Cd) concentration in bread wheat. We used double generalized linear model and hierarchical generalized linear model to identify vQTL associated with grain Cd. We identified novel vQTL regions on chromosomes 2A and …


A Global Perspective On Sustainable Intensification Research, Kenneth Cassman, Patricio Grassini Apr 2020

A Global Perspective On Sustainable Intensification Research, Kenneth Cassman, Patricio Grassini

Department of Agronomy and Horticulture: Faculty Publications

Despite general agreement that meeting food demand without further loss of natural ecosystems requires sustainable intensification, there is little dialogue about the research agenda needed to achieve it. To that end, we evaluate current trajectories towards sustainable intensification, review published research on the topic, identify missing links, and propose a prioritization framework to fill gaps. Although progress towards sustainable intensification is behind schedule, we are optimistic that current trends can get back on course assuming a well-prioritized and adequately funded research portfolio and appropriate policies and institutions to support it.


Diversity, Function And Regulation Of Cell Surface And Intracellular Immune Receptors In Solanaceae, Jong Hum Kim, Christian Castroverde Apr 2020

Diversity, Function And Regulation Of Cell Surface And Intracellular Immune Receptors In Solanaceae, Jong Hum Kim, Christian Castroverde

Biology Faculty Publications

The first layer of the plant immune system comprises plasma membrane-localized receptor proteins and intracellular receptors of the nucleotide-binding leucine-rich repeat protein superfamily. Together, these immune receptors act as a network of surveillance machines in recognizing extracellular and intracellular pathogen invasion-derived molecules, ranging from conserved structural epitopes to virulence-promoting effectors. Successful pathogen recognition leads to physiological and molecular changes in the host plants, which are critical for counteracting and defending against biotic attack. A breadth of significant insights and conceptual advances have been derived from decades of research in various model plant species regarding the structural complexity, functional diversity and …


Spring Meadow Management Practices: What’S A Rancher To Do?, Tara M. Harms, Jerry D. Volesky, Mitchell B. Stephenson Apr 2020

Spring Meadow Management Practices: What’S A Rancher To Do?, Tara M. Harms, Jerry D. Volesky, Mitchell B. Stephenson

Department of Agronomy and Horticulture: Dissertations, Theses, and Student Research

• Subirrigated meadows are a valuable forage resource to ranching operations in the Nebraska Sandhills, being used for both hay production and livestock grazing. • The water table of these meadows is within one meter of the soil surface during the growing season. • In some years, wet conditions hinder meadow utilization, resulting in a buildup of standing dead and litter plant material which can lower forage production.

• Investigate if burning and mowing are effective strategies to remove dead plant material from meadows • Determine if burning or mowing interact with grazing to influence end of season forage production …


Herbicide Injury From Dicamba And 2,4-D: How Much Is Too Much In Lettuce?, Xinzheng Chen, Amit J. Jhala, Stevan Z. Knezevic, Samuel E. Wortman Apr 2020

Herbicide Injury From Dicamba And 2,4-D: How Much Is Too Much In Lettuce?, Xinzheng Chen, Amit J. Jhala, Stevan Z. Knezevic, Samuel E. Wortman

Department of Agronomy and Horticulture: Dissertations, Theses, and Student Research

Off-target herbicide injury from dicamba and 2,4-D is an increasingly common problem for specialty crop growers in the Midwest U.S. Lettuce (Lactuca sativa L.) is a common specialty crops grown in Nebraska, but proximity to corn and soybean production leaves growers vulnerable to crop injury and significant economic loss. The goal of this study was to quantify crop injury and yield loss in greenhouse grown lettuce after exposure to simulated sub-lethal drift rates of 2,4-D and dicamba. Sublethal doses were determined based on a percentage of the maximum labeled rate and ranged from 25% to 0.01%. Tested lettuce cultivars …


Optimum Rates Of Surface-Applied Coal Char Decreased Soil Ammonia Volatilization Loss, Dinesh Panday, Maysoon M. Mikha, Harold P. Collins, Virginia L. Jin, Michael Kaiser, Jennifer Cooper, Arindam Malakar, Bijesh Maharjan Mar 2020

Optimum Rates Of Surface-Applied Coal Char Decreased Soil Ammonia Volatilization Loss, Dinesh Panday, Maysoon M. Mikha, Harold P. Collins, Virginia L. Jin, Michael Kaiser, Jennifer Cooper, Arindam Malakar, Bijesh Maharjan

Department of Agronomy and Horticulture: Faculty Publications

Fertilizer N losses from agricultural systems have economic and environmental implications. Soil amendment with high C materials, such as coal char, may mitigate N losses. Char, a coal combustion residue, obtained from a sugar factory in Scottsbluff, NE, contained 29% C by weight. A 30-d laboratory study was conducted to evaluate the effects of char addition on N losses via nitrous oxide (N2O) emission, ammonia (NH3) volatilization, and nitrate (NO3–N) leaching from fertilized loam and sandy loam soils. Char was applied at five different rates (0, 6.7, 10.1, 13.4, and 26.8 Mg C ha …


Using Ndvi To Differentiate Wheat Genotypes Productivity Under Dryland And Irrigated Conditions, Mohammed A. Naser, Raj Khosla, Louis Longchamps, Subash Dahal Mar 2020

Using Ndvi To Differentiate Wheat Genotypes Productivity Under Dryland And Irrigated Conditions, Mohammed A. Naser, Raj Khosla, Louis Longchamps, Subash Dahal

Department of Agronomy and Horticulture: Faculty Publications

Crop breeders are looking for tools to facilitate the screening of genotypes in field trials. Remote sensing-based indices such as normalized difference vegetative index (NDVI) are sensitive to biomass and nitrogen (N) variability in crop canopies. The objectives of this study were (i) to determine if proximal sensor-based NDVI readings can differentiate the yield of winter wheat (Triticum aestivum L.) genotypes and (ii) to determine if NDVI readings can be used to classify wheat genotypes into grain yield productivity classes. This study was conducted in northeastern Colorado in 2010 and 2011. The NDVI readings were acquired weekly from March to …


The State Of Sustainable Agriculture And Agroecology Research And Impacts: A Survey Of U.S. Scientists, Marcia Delonge, Tali Robbins, Andrea Basche, Lindsey Haynes-Maslow Feb 2020

The State Of Sustainable Agriculture And Agroecology Research And Impacts: A Survey Of U.S. Scientists, Marcia Delonge, Tali Robbins, Andrea Basche, Lindsey Haynes-Maslow

Department of Agronomy and Horticulture: Faculty Publications

A growing body of research suggests that although sustainable agriculture, particularly agroecology, can address challenges such as those related to climate change, ecosystem services, food insecurity, and farmer livelihoods, the transition to such systems remains limited. To gain insight into the state of U.S. sustainable agriculture and agroecology, we developed a 28-question mixed-method survey that was administered to scientists in these fields. Respondents (N=168) represented diverse locations, institutions, and career stages. They offered varied definitions of sustainable agriculture, with 40% considering economic and social well-being to be core components. Respondents identified the amount and duration of public research funding as …


Restoring The Fire–Grazing Interaction Promotes Tree–Grass Coexistence By Controlling Woody Encroachment, Jane F. Capozzelli, James R. Miller, Diane M. Debinski, Walter H. Schacht Feb 2020

Restoring The Fire–Grazing Interaction Promotes Tree–Grass Coexistence By Controlling Woody Encroachment, Jane F. Capozzelli, James R. Miller, Diane M. Debinski, Walter H. Schacht

Department of Agronomy and Horticulture: Faculty Publications

Woody encroachment can convert grasslands and savannas to shrublands and woodlands, so understanding the processes which regulate woody encroachment is necessary to conserve or restore these ecosystems.We hypothesized that recreating the fire–grazing interaction would limit woody encroachment because focal grazing increases fuel accumulation on unburned areas and increases browsing on emergent woody plants in burned areas. This study was conducted in the Grand River Grasslands of Iowa and Missouri (USA) on 11 sites (15.4–35.0 ha). Each site was assigned to one treatment: patch-burn-graze (n = 4), with spatially discrete prescribed fires and free access by cattle (the fire–grazing interaction); graze-andburn …


Combination Of Biological And Chemical Soil Tests Best Predict Maize Nitrogen Response, M. D. Mcdaniel, Daniel T. Walters, L. G. Bundy, Xiaofei Li, Rhae A. Drijber, John E. Sawyer, Michael J. Castellano, C. A.M. Laboski, Peter C. Scharf Feb 2020

Combination Of Biological And Chemical Soil Tests Best Predict Maize Nitrogen Response, M. D. Mcdaniel, Daniel T. Walters, L. G. Bundy, Xiaofei Li, Rhae A. Drijber, John E. Sawyer, Michael J. Castellano, C. A.M. Laboski, Peter C. Scharf

Department of Agronomy and Horticulture: Faculty Publications

Soil tests can help optimize nitrogen (N) fertilizer rates, thereby improving farmer profitability and environmental performance. In US Midwest maize (Zea mays) production, however, most soil N tests have limited accuracy to predict N fertilizer requirements. Here we tested the individual and combined ability of 30 soil tests (12 rapid N extractions, seven biological carbon or N tests, six long-term incubation kinetic parameters, and five other routine soil tests), as well as environmental and management data, to predict maize response to N fertilizer across 56 site-years in the US Midwest. Out of 30 soil tests, and across all …


Soybean Response To Water: Trait Identification And Prediction, Shawn Jenkins Feb 2020

Soybean Response To Water: Trait Identification And Prediction, Shawn Jenkins

Department of Agronomy and Horticulture: Dissertations, Theses, and Student Research

The rising demand for soybean [Glycine Max (L.) Merrill] taken in consideration with current climatic trends accentuates the importance of improving soybean seed yield response per unit water (WP). To further our understanding of the quantitative WP trait, a multi-omic approach was implemented for improved trait identification and predictive modeling opportunities. Through the evaluation of two recombinant inbred line populations jointly totaling 439 lines subjected to contrasting irrigation treatments, informative agronomic, phenomic, and genomic associations were identified. Across both populations, relationships were identified between lodging at maturity (r = -0.58, H = 0.86), canopy to air temperature differential …


Enhancing Hybrid Prediction In Pearl Millet Using Genomic And/Or Multi- Environment Phenotypic Information Of Inbreds, Diego Jarquin, Reka Howard, Zhikai Liang, Shashi K. Gupta, James C. Schnable, Jose Crossa Jan 2020

Enhancing Hybrid Prediction In Pearl Millet Using Genomic And/Or Multi- Environment Phenotypic Information Of Inbreds, Diego Jarquin, Reka Howard, Zhikai Liang, Shashi K. Gupta, James C. Schnable, Jose Crossa

Department of Agronomy and Horticulture: Faculty Publications

Genomic selection (GS) is an emerging methodology that helps select superior lines among experimental cultivars in plant breeding programs. It offers the opportunity to increase the productivity of cultivars by delivering increased genetic gains and reducing the breeding cycles. This methodology requires inexpensive and sufficiently dense marker information to be successful, and with whole genome sequencing, it has become an important tool in many crops. The recent assembly of the pearl millet genome has made it possible to employ GS models to improve the selection procedure in pearl millet breeding programs. Here, three GS models were implemented and compared using …


Long-Term Ecological Research In Southern Brazil Grasslands: Effects Of Grazing Exclusion And Deferred Grazing On Plant And Arthropod Communities, Pedro M.A. Ferreira, Bianca O. Andrade, Luciana R. Podgaiski, Amanda C. Dias, Valerio D. Pillar, Gerhard E. Overbeck, Milton De S. Mendonca Jr., Ilsi I. Boldrini Jan 2020

Long-Term Ecological Research In Southern Brazil Grasslands: Effects Of Grazing Exclusion And Deferred Grazing On Plant And Arthropod Communities, Pedro M.A. Ferreira, Bianca O. Andrade, Luciana R. Podgaiski, Amanda C. Dias, Valerio D. Pillar, Gerhard E. Overbeck, Milton De S. Mendonca Jr., Ilsi I. Boldrini

Department of Agronomy and Horticulture: Faculty Publications

Grazing exclusion may lead to biodiversity loss and homogenization of naturally heterogeneous and species-rich grassland ecosystems, and these effects may cascade to higher trophic levels and ecosystem properties. Although grazing exclusion has been studied elsewhere, the consequences of alleviating the disturbance regime in grassland ecosystems remain unclear. In this paper, we present results of the first five years of an experiment in native grasslands of southern Brazil. Using a randomized block experimental design, we examined the effects of three grazing treatments on plant and arthropod communities: (i) deferred grazing (i.e., intermittent grazing), (ii) grazing exclusion and (iii) a control under …


Editorial: New Insights Into Mechanisms Of Epigenetic Modifiers In Plant Growth And Development, Ming Luo, Gabino Ríos, Tomasz Jacek Sarnowski, Shoudong Zhang, Nitin Mantri, Jean-Benoit Charron, Marc Libault Jan 2020

Editorial: New Insights Into Mechanisms Of Epigenetic Modifiers In Plant Growth And Development, Ming Luo, Gabino Ríos, Tomasz Jacek Sarnowski, Shoudong Zhang, Nitin Mantri, Jean-Benoit Charron, Marc Libault

Department of Agronomy and Horticulture: Faculty Publications

In eukaryotic cells, chromatin, a highly dynamic nucleoprotein complex, plays a critical role in controlling gene expression notably by regulating the interaction between transcription factors and regulatory elements. The structure of the chromatin is determined by epigenetic mechanisms, including DNA methylation, histone modifications, and chromatin remodeling. A growing body of evidence indicates that epigenetic regulations are involved in plant adaptation to environmental stresses, and in plant development, including flowering control, fruit and root development, as well as seed maturation and germination. Furthermore, epigenetic mechanisms have the potential to stabilize cell identity and maintain tissue organization. Hence, epigenetic diversity is now …


Yield And Quality In Purple-Grained Wheat Isogenic Lines, Alexey Morgounov, Yasar Karaduman, Beyhan Akin, Sinan Aydogan, Peter Stephen Baenziger, Madhav Bhatta, Vladimir Chudinov, Susanne Dreisigacker, Velu Govindan, Safure Güler, Carlos Guzman, Ajit Nehe, Rachana Poudel, Devin J. Rose, Elena Gordeeva, Vladimir Shamanin, Kemal Subasi, Yuriy Zelenskiy, Elena Khlestkina Jan 2020

Yield And Quality In Purple-Grained Wheat Isogenic Lines, Alexey Morgounov, Yasar Karaduman, Beyhan Akin, Sinan Aydogan, Peter Stephen Baenziger, Madhav Bhatta, Vladimir Chudinov, Susanne Dreisigacker, Velu Govindan, Safure Güler, Carlos Guzman, Ajit Nehe, Rachana Poudel, Devin J. Rose, Elena Gordeeva, Vladimir Shamanin, Kemal Subasi, Yuriy Zelenskiy, Elena Khlestkina

Department of Agronomy and Horticulture: Faculty Publications

Breeding programs for purple wheat are underway in many countries but there is a lack of information on the effects of Pp (purple pericarp) genes on agronomic and quality traits in variable environments and along the product chain (grain-flour-bread). This study was based on unique material: two pairs of isogenic lines in a spring wheat cv. Saratovskaya-29 (S29) background differing only in Pp genes and grain color. In 2017, seven experiments were conducted in Kazakhstan, Russia, and Turkey with a focus on genotype and environment interaction and, in 2018, one experiment in Turkey with a focus on grain, flour, and …


The Land Variational Ensemble Data Assimilation Framework: Lavendar V1.0.0, Ewan Pinnington, Tristan Quaife, Amos Lawless, Karina Williams, Tim Arkebauer, David Scoby Jan 2020

The Land Variational Ensemble Data Assimilation Framework: Lavendar V1.0.0, Ewan Pinnington, Tristan Quaife, Amos Lawless, Karina Williams, Tim Arkebauer, David Scoby

Department of Agronomy and Horticulture: Faculty Publications

The Land Variational Ensemble Data Assimilation Framework (LAVENDAR) implements the method of fourdimensional ensemble variational (4D-En-Var) data assimilation (DA) for land surface models. Four-dimensional ensemble variational data assimilation negates the often costly calculation of a model adjoint required by traditional variational techniques (such as 4D-Var) for optimizing parameters or state variables over a time window of observations. In this paper we present the first application of LAVENDAR, implementing the framework with the Joint UK Land Environment Simulator (JULES) land surface model. We show that the system can recover seven parameters controlling crop behaviour in a set of twin experiments. We …


Adaptive Capacity In Ecosystems, David G. Angeler, Hannah Fried-Petersen, Craig R. Allen, Ahjond Garmestani, Dirac L. Twidwell Jr, H.E. Birgé, W. Chuang, V. M. Donovan, T. Eason, C.P. Roberts, S.M. Sundstrom, C.L. Wonkka Jan 2020

Adaptive Capacity In Ecosystems, David G. Angeler, Hannah Fried-Petersen, Craig R. Allen, Ahjond Garmestani, Dirac L. Twidwell Jr, H.E. Birgé, W. Chuang, V. M. Donovan, T. Eason, C.P. Roberts, S.M. Sundstrom, C.L. Wonkka

Department of Agronomy and Horticulture: Faculty Publications

Understanding the adaptive capacity of ecosystems to cope with change is crucial to management. However, unclear and often confusing definitions of adaptive capacity make application of this concept difficult. In this paper, we revisit definitions of adaptive capacity and operationalize the concept. We define adaptive capacity as the latent potential of an ecosystem to alter resilience in response to change. We present testable hypotheses to evaluate complementary attributes of adaptive capacity that may help further clarify the components and relevance of the concept. Adaptive sampling, inference and modeling can reduce key uncertainties incrementally over time and increase learning about adaptive …