Life Sciences Commons^™

Genetic Sequencing For Measuring Biodiversity In Recent And Ancient Marine Sediments, Lauren Judge

Celebration of Learning

Taxonomic biodiversity, measured by counting the number of species present in a given area, is the most common method of capturing ecosystem biodiversity in recent and ancient environments. While this method is widely accepted, it is limited by poor preservation and identification of many individuals, making it impossible to include every species within an ecosystem and resulting in the loss of some diversity information. To address this issue, we measured the genetic biodiversity (in which species are determined based on sequencing of their DNA) of shallow marine ecosystems by extracting and sequencing the 18S ribosomal gene from bulk carbonate sediment …

Sensory Perception, Adrian Rodriguez-Contreras

Open Educational Resources

Different types of sensory systems with their functional modalities will be presented. The biological bases for how these functions are generated and modified will then be described. As vision is the principal means of perception, we will focus in this course most on visual processing. Scientific data will be integrated into the lectures, such that students develop critical skills in analyzing data and proposing hypotheses.

Dna Methods To Understand Genetic Variation Of The Mola Mola Populations In And Near Cape Cod, Jessica Barros

Honors Program Theses and Projects

The ocean sunfish Mola mola is a frequent summer visitor to the waters off of Southeastern Massachusetts and Cape Cod. In late fall, water temperatures drop and some animals strand on area beaches. Stranded animals provide an easily available source of DNA to study the population genetics of this species with the specific goal to learn about genetic variation within and between individuals in this population. This study will continue to identify and characterize microsatellite repeat regions that will be used to study genetic variation. Four new microsatellite regions have been identified and amplified using polymerase chain reaction conditions that …

The Effects Of Meloidogyne Incognita On Jaz1, Jaz12, And Jaz13 Gene Expression In Arabidopsis, Emily Green

Honors Program Theses and Projects

Meloidogyne incognita, a root-knot nematode (RKN), poses a threat to the well-being of the global agricultural industry. These endoparasites rely on plant roots and drain nutrients from crops intended for human or livestock consumption. Root knot nematodes cost the agricultural industry billions of dollars in lost crops each year and threaten efforts to meet the growing demand for food. Though plants are susceptible to dangers, such as these parasites, many have evolved defense and/or repair mechanisms to compensate for this vulnerability. The goal of this research is to study one gene family involved in such defenses. Specifically, I studied the …

A Review Of The Global Commercial Cephalopod Fishery, With A Focus On Apparent Expansion, Changing Environments, And Management, Corey Clark

HCNSO Student Capstones

Cephalopods are both important predators and prey in many marine environments and important fishery resources in many countries. The global fishery has expanded almost continuously from landings of 580,000 metric tonnes in 1950 to over 4 m.t. in 2007. Cephalopods are ecological opportunists with highly plastic biological characteristics and varied population dynamics. Nearly all commercially harvested species are short-lived and can reproduce quickly, enabling them to evolve more rapidly under high selection pressure relative to many fish competitors and predators. As a result, they may have the biological means to be successful under conditions of long-term global climate change. This …

Bringing Science To Life In The Fifth-Grade Classroom Through Hands-On Learning, Kelly Gately

Honors Program Theses and Projects

Science helps provide insight into the unknown and provides an outlet for exploration of living things. Children are innately curious about how thing work, and they are eager to ask questions. Science is the perfect outlook for students to fully engage in their inquisitiveness, but yet, many classrooms are skipping over science lessons or choosing to heavily focus on other subjects, such as reading and writing. Science is often taught as an elective, integrated with other subjects or it is only focused on for a short period of time. Unfortunately, when this subject does receive attention, lessons are heavily text-book …

The Role Of Oxytocin On Social Behavior Associated With The Formation Of A Social Pair-Bond In The Socially Monogamous Convict Cichlid (Amatitlania Nigrofasciata), Christopher Garcia

Graduate Theses

The mechanisms for monogamy have evolved several times throughout history across various taxa in accordance with selective pressures. In vertebrates, monogamy is facilitated by the formation and the maintenance of social pair-bonds between mates. Social pair-bonds are a form of selective attachment that require complex neurobiological pathways in order to develop and continue. These neurobiological pathways are often regulated by neuroendocrine mechanisms, such as the release of the two neuroendocrine nonapeptides, oxytocin and arginine vasopressin, in specific parts of the brain or body. These neuroendocrine peptides play a big role in social and sexual behaviors. In prairie voles (Microtus ochrogaster) …

Bioinformatics Ii, Bio 3352, Course Outline, Eugenia G. Giannopoulou

Open Educational Resources

This course is a continuation of Bioinformatics I. Topics include gene expression, microarrays, next- generation sequencing methods, RNA-seq, large genomic projects, protein structure and stability, protein folding, and computational structure prediction of proteins; proteomics; and protein-nucleic acid interactions. The lab component includes R-based statistical data analysis on large datasets, introduction to big data analysis tools, protein visualization software, internet-based tools and high-level programming languages.

Pyy3-36 Efficacy Is Independent Of Photoperiod But Dependent On Time Of Day, Marissa Maroni

Honors Program Theses and Projects

Approximately 70% of Americans are overweight or obese and studies have shown that poverty-dense American counties are the most prone to obesity (Levine, 2011). Along with diet, the endogenous circadian rhythms have been found to be an important piece of human metabolic health. Circadian disruption in humans, such as jet-lag and shift work, have been linked to metabolic problems such as Type 2 Diabetes Mellitus and Metabolic Syndrome. Since circadian disruption affects many demographics including shift workers and routine business travelers it is imperative to understand the biological mechanism behind the relationship between circadian disruption and weight gain. One potential …

Advanced Cell & Molecular Biology Ii Cmb 502, Michael Cerbo

Library Impact Statements

No abstract provided.

Enhancing The Anti-Tumor Efficacy Of T Cells With Naturally Occurring Plant Stilbenes, Elle Richardson, Andrea Leigh Soles

Undergraduate Publications

Despite advances in treatment options, cancer remains the second leading cause of death in the United States. Many therapies use immune cells, specifically T cells, for cancer therapy. To enhance tumor recognition by T cells, chimeric antigen receptors consisting of signaling domains fused to receptors that recognize tumor antigens can be created and expressed in T cells. One receptor that is a prospective target for a chimeric antigen receptor is PD1 because the ligands for the PD1 receptor are expressed on many cancer types. Our lab has genetically engineered a chimeric PD1 (chPD1) receptor and has shown that chPD1-expressing T …

Advanced Cell And Molecular Biology I Cmb 501, Michael Cerbo

Library Impact Statements

No abstract provided.

Laboratory Rotations In Cell And Molecular Biology, Michael Cerbo

Library Impact Statements

No abstract provided.

Consistency Is Futile!: Selecting Phycoremediators For Consortia, Tori Spencer

BIO 410 Spring 2019 Research Papers

Bioremediation is the process by which organisms remove and transform toxic compounds in a contaminated source. This is a waste management technique currently used to clean up man-made contamination. Many organisms act as natural remediators; in the case of algae, they are called phycoremediators who perform phycoremediaton. The term algae encompasses a variety of taxonomic groups and their diversity is still being realized; there are over 44,000 named species of the 72,000 species that we have identified. Some estimates calculate that there are over 200,000 diatom species alone. This diversity continues to be difficult to organize, which is problematic for …

Investigating The Effects Of Cancer Mutations On The Activity Of P300, Meghan Hall

Spring Showcase for Research and Creative Inquiry

Investigating the effects of cancer mutations on the activity of p300

An Evaluation Of Elemental Composition Of Soils Associated With Ground Nesting Ants In The Family Formicidae In Somerset County, Maine, Haley H. Depner

All Student Scholarship

Ants are keystone organisms and engineers in many ecosystems, playing an important role in nutrient cycling and rearrangement of organic and inorganic materials through foraging, waste management and, in subterranean species, nest construction and maintenance. In this study, I conducted elemental analysis of soils for calcium, copper, iron, potassium, manganese and zinc in and around the colonies of subterranean nesting ants. The two-step analysis used in this study utilizes the efficiency of X-Ray Fluorescence (XRF) Spectrometry to look for overall trends in elemental composition followed by Flame Atomic Absorbance (AA) to achieve higher resolution of select elements of interest as …

Ability Of Flavonoids To Mimic The Estrogen Receptor To Drive Myeloid Derived Suppressor Cell Differentiation, Megan Bland, Cecilie Elliott, Kathryn Kosiorek

Spring Showcase for Research and Creative Inquiry

Flavonoids are natural compounds found in dietary elements such as soy, grains, and vegetables that have the potential to bind to the estrogen receptor. Activation of the estrogen receptor drives myeloid derived suppressor cell (MDSC) accumulation, cells that increase during cancer, inflammation, and infection. In this study, we are investigating specific flavonoids, such as epigallocatechin-3-gallate (EGCG), kaempferol, naringenin, daidzein, and genistein, for their ability to mimic estrogen. After examination, we expect that MDSC differentiation will decrease upon treatment of the chosen flavonoids, leading to reduced carcinogenic effects.

The Use Hela Derived Telomerase On Nk Cells In The Treatment Of Ovarian Cancer, Juwairyah Gunter

Spring Showcase for Research and Creative Inquiry

A research proposal for a novel immunotherapy for treating ovarian cancer.

Study Guides And Videos For Openstax Biology, Chapters 5-7 (Egsc), Martiana Sega, David Chevalier

Biological Sciences Ancillary Materials

This set of videos and study guides for OpenStax Biology was created under an ALG Mini-Grant for Ancillary Materials Creation and Revision. Two videos on energy coupling and osmosis are included, along with study guides for chapters 5-8:

• Plasma Membrane
• Metabolism
• Cellular Respiration

All files are included in one .zip folder.

Zero Textbook Cost Syllabus For Env 3009/4900 (Conservation Biology And Sustainable Development), Stephen Gosnell

Open Educational Resources

Conservation biology is an interdisciplinary topic that explores how we can protect and maintain natural areas. Due to the resources we take and impacts we have on natural environments, this field is directly related to restoration ecology (restoring natural areas) and sustainable development/natural resource management. We will explore the basis for these related fields from an ecological, social, legal, and cultural perspective, as all conservation and management projects take place in the larger human landscape. We will consider how we measure biodiversity, why it matters, why is it is threatened, and how we can manage (protect, restore, maintain, use) it …

High Expression Of Osm And Il-6 Are Associated With Decreased Breast Cancer Survival: Synergistic Induction Of Il-6 Secretion By Osm And Il-1Β, Ken Tawara, Hannah Scott, Jacqueline Emathinger, Cody Wolf, Dollie Lajoie, Danielle Hedeen, Laura Bond, Cheryl Jorcyk

Biomedical Research Institute Publications and Presentations

Chronic inflammation has been recognized as a risk factor for the development and maintenance of malignant disease. Cytokines such as interleukin-6 (IL-6), oncostatin M (OSM), and interleukin-1 beta (IL-1β) promote the development of both acute and chronic inflammation while promoting in vitro metrics of breast cancer metastasis. However, anti-IL-6 and anti-IL-1β therapeutics have not yielded significant results against solid tumors in clinical trials. Here we show that these three cytokines are interrelated in expression. Using the Curtis TCGA™ dataset, we have determined that there is a correlation between expression levels of OSM, IL-6, and IL-1β and reduced breast cancer patient …

H/L Ratio As A Measurement Of Immune Function In Terrapene Ornata Species, Vesa Govori

Honors Program: Senior Projects (Public)

White blood cells are a key part of the immune system, and changes in white cell count can reveal the overall state of health and the immune systems functional ability of a species. White blood such as heterophils and lymphocytes are essential for being able to fight off infections. Analyzing different cell ratios has been commonly done before as a way to observe immune function in bird species as well as other species. Understanding that there are different functions between the different white blood cells provides an extra interesting perspective to what could be happening in the immune system function …

Using Motion-Activated Trail Cameras To Study Diet And Productivity Of Cliff-Nesting Golden Eagles, Jordan T. Harrison, Michael N. Kochert, Benjamin P. Pauli, Julie A. Heath

Raptor Research Center Publications and Presentations

Studies of cliff-nesting raptors can be challenging because direct observations of nest contents are difficult. Our goals were to develop a protocol for installing motion-activated trail cameras at Golden Eagle (Aquila chrysaetos) nests to record diet information and productivity, and to estimate prey detection probability using different diet study methods. In 2014 and 2015, we installed cameras at 12 Golden Eagle nests with 18–42-d-old nestlings. Following installation, we monitored adult behavior using direct observation and post-installation image review. At two nests, adult eagles did not return to nests or exhibited behaviors suggesting avoidance of the cameras, but returned …

Student Perceptions Of Reasons For Lecture And Active Learning, Calan Koch

Honors Program: Senior Projects (Public)

With perceived student resistance to active learning in the classroom, instructors are hesitant to implement such methods into their classroom structure despite how effective they may be. This research seeks to understand student perceptions related to the transition to higher prevalence of active learning techniques. We aimed to find answers to how students perceive the ideal classroom to be structured, what reasons they perceive for lecture and active learning components, and possible explanations to concerns of groupwork during class time. We analyzed 64 interviews with undergraduate biology students at the University of Nebraska- Lincoln, developed coding rubrics from commonly found …

Investigating The Role Of Free Radicals In Huntington's Disease Using Drosophila Melanogaster, Jennifer Libov

Honors Program: Senior Projects (Public)

During normal cell metabolism, reactive oxygen species (ROS) are produced as a byproduct of oxidative phosphorylation. ROS are utilized in the cell as a signaling molecule and can be maintained at healthy levels by cellular antioxidants. However, when the cell experiences oxidative stress due to environmental or genetic conditions, levels of ROS can exceed healthy levels and inhibit necessary life functions by damaging biomolecules and cellular structures. This loss of function can lead to physiological decline and neurodegeneration, such as in diseases like Alzheimer’s, amyotrophic lateral sclerosis (ALS), and, potentially, Huntington’s disease. The following experiments use the model genetic organism …

Intertidal Ecology Bio 416, Michael Cerbo

Library Impact Statements

No abstract provided.

Student-Faculty Collaborative Research Grant Report, Megan Bestwick

Post-Grant Reports

Mitochondria are essential organelles in most eukaryotic cells because of their role in metabolism and the production of ATP by the oxidative phosphorylation (OXPHOS) pathway, as well as other key cellular processes. Metal cofactors, such as copper (Cu) and iron (Fe), are incorporated into OXPHOS protein complexes of yeast located within the inner membrane of the mitochondria. Misincorporation or modulation of these available metals in mitochondrial enzymes leads to the production of reactive oxygen species (ROS). ROS are reactive molecules containing oxygen such as peroxides, superoxide, and hydroxyl radicals. Yeast are a good model for studying aging and the effect …

Coral Reef Ecology Bio 465x, Michael Cerbo

Library Impact Statements

No abstract provided.

The Social Construction Of Life: Critical Thinking About Biology In Society, Peter J. Taylor

Working Papers on Science in a Changing World

This book aims to expand the boundaries of the influences that readers consider when interpreting the practices and products of the life sciences ("biology") and their impact on society. The chapter topics include: Interpreting Ideas of Nature; The structure of origin stories; Multiple layers in influencing an audience: The case of Darwin's On the Origin of Species; Metaphors of coordination and development; What causes a disease?—the consequences of hereditarianism in the case of pellagra; How changeable are IQ test scores?; Social negotiations around genetic screening; Intersecting processes involving genes and environment.

Each chapter consists of 5 parts:

1. Introduce simple …

Life Line - February 2019, Otterbein Biology And Earth Science Department

Life Line - The Biology Department Newsletter

Curricular Changes, Dr. Young's Sabbatical, Coal, Gas & Oil - Geology trip to eastern Ohio, Rebekah Perry is engaging the community in natural history, Student Research, Fem in STEM, Zoo students on Belize Trip, Scientific Art