Life Sciences Commons^™

A Flora Of Coyote Ridge And Flat, Inyo County, California, Martin Purdy

CGU Theses & Dissertations

California’s Sierra Nevada mountain range contains a disproportionate share of the state’s plant diversity and is one of the most floristically diverse regions of its size in the United States. The high Sierra Nevada, in particular, has been identified as an important center of species richness and endemism within California. Anthropogenic climate warming is expected to disproportionately affect mountain ecosystems, and models have predicted serious habitat contraction and extirpation for many alpine plant taxa. A specimen-based inventory of the vascular and non-vascular plants of Coyote Ridge and Flat was conducted to establish baseline data for one such sensitive alpine and …

Limacella Subtropicana (Amanitaceae, Agaricales), A New Species From Pakistan Based On Morphological And Molecular Phylogenetic Evidences, Aiman Izhar, Abdul Rehman Niazi, Muhammad Asif, Muhammad Haq Nawaz, Hira Bashir, Abdul Nasir Khalid

Turkish Journal of Botany

Basidiomata of a hitherto undescribed Limacella species were collected from the grasslands of Punjab, Pakistan. We describe it as Limacella subtropicana, which is characterized by its viscid, white to creamy pileus, white to the creamy stipe, changing to brown when bruised, subglobose basidiospores measuring 4.0?6.3 × 3.7?5.5 ?m, an ixotrichodermal pileipellis with subcylindric to clavate terminal elements and the common presence of clamp connections in all tissues. Maximum likelihood and Bayesian inference analyses of ITS sequences and LSU sequences of nrDNA confirmed its placement in the genus Limacella. A comprehensive description and a comparison of the new taxon with other …

Manipulating Species Diversity: Environmental Impacts In Row Crop, Livestock, And Grassland Agroecosystems, Alayna A. Jacobs

Theses and Dissertations--Plant and Soil Sciences

The diversity of living species in an agroecosystem affects both natural resources and agricultural production efficiency. The rise of managed plant monocultures has allowed agricultural yields to increase over time. However, simplifying agroecosystems affects the capacity of the system to sustainably provide clean air, water, and productive soils essential for continued food and fiber production. This dissertation manipulates species diversity in row crop and forage agroecosystems prevalent in the Eastern United States and tracks the associated environmental and agricultural production consequences.

In row crop agroecosystems, increasing plant diversity with winter cover crops has been suggested as a strategy to increase …

Shackletonia Backorii - A New Species Of Lichenised Fungus From James Ross Island (Antarctic Peninsula), Mehmet Gökhan Halici, Mi̇that Güllü, Ekrem Bölükbaşi, Merve Kahraman Yi̇ği̇t

Turkish Journal of Botany

The new lichen species Shackletonia backorii Halıcı, Güllü & Kahraman is described from James Ross Island, which is located in the North-East Antarctic Peninsula region. The new species is morphologically most similar to S. insignis (Søchting & Øvstedal) Søchting, Frödén & Arup, which was described from Livingstone Island (North-West Antarctic Peninsula region). These two species have a similar bluish grey to blackish thallus with a microfruticose and coralloid structure and red brown or almost black zeorine apothecia, but S. backorii has rhomboid ascospores and grows on soil whereas S. insignis has ellipsoid ascospores and occurs in sheltered crevices of rocks. …

Environmental Effects On Constructed Wetland Microbial Diversity And Function In The Context Of Wastewater Management, Sandrine Grandmont-Lemire

Cal Poly Humboldt theses and projects

Microbial communities play a crucial role in ecosystems, yet we know little about how microbial diversity influences ecosystem functioning. An important gap in our understanding is how environmental change affects microbial Biodiversity-Ecosystem Function relationships (BEF). These complex interactions between microbial biodiversity and ecosystem function can influence major biogeochemical processes, such as the nitrogen cycle in wetland ecosystems, which play an important role in managing wastewater. To address the effect of biodiversity on function, my study investigates the BEF relationships between microbial diversity and the function in terms of ammonia removal from wastewater at the Arcata Wastewater Treatment Facility (AWTF) both …

Botanical Assessments Of High-Quality Southern Shrub-Carr And Hardwood Swamp Wetlands In The Undeveloped Lowell Regional Greenspace, Kent County, Michigan, Garrett Crow, Dave Warners, Haley R. Weesies, Jonathon D. Walt, Zachary Hartwig, Carolyn H. Koehn

Faculty and Professional Research

The 2019–2023 Masterplan for Kent County Parks includes the future development of acquired properties that have been designated as the Lowell Regional Greenspace (528 acres), occupying nearly the entirety of Section 22 of Lowell Charter Township in Kent County, Michigan. Four wetlands located in the same drainage basin along Karen Creek in the Lowell Regional Greenspace were inventoried for floristic quality assessments during the summers of 2016, 2018, 2019, and 2021. One of the wetlands was forested and determined to be a southern hardwood swamp community type. The other three wetlands are best classified as shrub-carr communities. In the southern …

Effects Of Dissimilar Silvicultural Techniques On Small Mammal Communities In Michigan's Upper Peninsula, Breanna R. Gusick

Dissertations, Master's Theses and Master's Reports

Small mammal populations, and predators reliant upon them as food resources, are often challenged by conflicting objectives of timber production and maintenance of quality habitat. With over 70% of the landscape forested, and nearly one-third of the land privately owned, Michigan’s Upper Peninsula (UP) is a matrix of independent management strategies. To assess the effects of various silvicultural regeneration methods on small mammal populations in the Upper Peninsula, we trapped small mammals in experimental silviculture plots, whereby treatments varied by regeneration method (amount of residual canopy cover) and site preparation (i.e., control, tip-up, and scarification), and deer exclosures. We used …

Conservation In Ecuador's Sangay-Podocarpus Connectivity Corridor: A Study Of Coproductive Capacities, Gabriel Isaac Oppler

Graduate Student Theses, Dissertations, & Professional Papers

Connectivity conservation, a growing topic across science, policy, and management, is considered an important supplement to protected areas. A diversity of ecological corridors is emerging to restore fragmented landscapes, preserve intact habitats, protect biodiversity, and improve resilience to climate change. Despite increasing expertise and resources for planning corridors, many initiatives face challenges mobilizing science and governance to implement corridors on the ground. In many cases, biophysical science is supplemented with social science to better understand the human elements of connectivity. Similarly, collaboration and partnership are heralded as essential for effective governance of corridors. However, less is known about how these …

A Framework For Near-Real Time Monitoring Of Diversity Patterns Based On Indirect Remote Sensing, With An Application In The Brazilian Atlantic Rainforest, Andrea Paz, Thiago S. Silva, Ana C. Carnaval

Publications and Research

Monitoring biodiversity change is key to effective conservation policy. While it is difficult to establish in situ biodiversity monitoring programs at broad geographical scales, remote sensing advances allow for near-real time Earth observations that may help with this goal. We combine periodical and freely available remote sensing information describing temperature and precipitation with curated biological information from several groups of animals and plants in the Brazilian Atlantic rainforest to design an indirect remote sensing framework that monitors potential loss and gain of biodiversity in near-real time. Using data from biological collections and information from repeated field inventories, we demonstrate that …

Editorial: Fire Regimes In Desert Ecosystems: Drivers, Impacts And Changes, Eddie J. B. Van Etten, Matthew L. Brooks, Aaron C. Greenville, Glenda M. Wardle

Research outputs 2022 to 2026

Although not commonly associated with fire, many desert ecosystems across the globe do occasionally burn, and there is evidence that fire incidences are increasing, leading to altered fire regimes in this biome. The increased prevalence of megafires (wildfires > 10,000 ha in size and typically damaging) in most global biomes is linked to climate change, although those occurring in deserts have received far less attention, from both a research and policy perspective, than that of forested ecosystems (Linley et al., 2022). Understanding the drivers of desert fires, from climate to landscape patterns of hydrology and soil, and how these may be …

Ishtarella Thailandica Martens, New Genus, New Species (Hymenoptera: Braconidae: Aphidiinae) Of Aphid Parasitoid From Thailand, With A Country Checklist Of Aphidiinae, Abigail P. Martens, Matthew L. Buffington, Donald L.J. Quicke, Marisa Raweearamwong, Buntika A. Butcher, Paul J. Johnson

Insecta Mundi

Ishtarella Martens new genus (Hymenoptera: Braconidae: Aphidiinae) and I. thailandica Martens new species are described and illustrated from Doi Phu Kha National Park, Nan Province, Thailand. The genus is assigned to the tribe Aphidiini, subtribe Trioxina. Based on morphology, Ishtarella appears most closely related to Binodoxys Mackauer. An updated checklist of the aphidiine fauna of Thailand, based on published records, is presented.

Parasitoid wasps in the subfamily Aphidiinae (Hymenoptera: Braconidae) comprise about 60 genera and more than 650 species worldwide (Yu et al. 2016). The Aphidiinae of Thailand were all but unknown prior to a Thai­land Inventory Group for Entomological …

Biodiversity Of The Blattopteran Fauna In The Chelia Cedar Forest (The Aures - Eastern Algeria), Nadia Aberkane, Sarra Habbachi, Wafa Habbachi, Nora Belkhiri, Naama Frah

Journal of Bioresource Management

The cedar forests in Algeria represent a model of forests very rich in entomological fauna and especially dictyopterans, notably blattopterans. In the cedar forest of Chelia in the Aurès Mountains, we chose three different sites according to altitude (2020 m, 1920 m, 1820 m) in order to collect existing cockroaches using the sight-hunting method (twice a month). The inventory allowed us to capture more than 1220 cockroaches and we were able to identify three genus (Dziriblatta, Phyllodromica ,Loboptera) and seven species: Dziriblatta stenoptera, Dziriblatta nigrivintris, Phyllodromica zebra, Pyllodromica trivittata, Phyllodromica sp, Loboptera angulata, Loboptera alluaudi, of which …

The Effects Of Grazing Management And Fertilization On Grassland Diversity And Productivity, Warren Mcg. King, David R. Kemp

IGC Proceedings (1977-2023)

The effects of management practices on plant species diversity and productivity within a naturalised grassland was studied as part of a large-scale experiment designed to investigate issues of sustainability in temperate Australia. Fertiliser increased the production but reduced the diversity of the sward. The main decline was in exotic weed species. Strategic grazing resulted in a small increase in pasture diversity but a reduction in productivity. There was a consistent decline in diversity as productivity increased, across all treatments.

Pasture Dynamics After Sodseeding Cool Season Species With Or Without Glyphosate In Subtropical Natural Grasslands, Luciana M. Rizo, E. L. Moojen, Fernando L. F. De Quadros, F. E. Schlick, F. L. Correa

IGC Proceedings (1977-2023)

This trial was conducted to evaluate vegetation dynamics of natural grasslands fertilized and sodseeded with the cool season species Italian ryegrass (Lolium multiflorum), white clover (Trifolium repens) and birdsfoot trefoil (Lotus corniculatus) with or without glyphosate. Treatments that included herbicide spraying on natural vegetation caused a substitution of perennial grasses by undesirable species, and did not show a significant contribution of introduced species. Andropogon lateralis, Paspalum notatum, Paspalum dilatatum and Paspalum plicatulum almost disappeared, and were replaced by Chaptalia nutans and Apium spp, among others.

Core Collection Approaches And Genetic Diversity In Flemingia Macrophylla, R. Schultze‐Kraft, M. Peters

IGC Proceedings (1977-2023)

Core collections are a useful means to optimise the management, including conservation, of forage germplasm collections. Such optimisation is warranted in view of increasingly limited research resources. As there are several potential options to create core collections, a project is presented in which three approaches are compared: (i) based on germplasm origin information; (ii) genetic diversity assessment by agronomic characterisation/evaluation; and (iii) DNA markers. As example-species for the project, the tropical legume shrub Flemingia macrophylla is selected because of its particular multiple-use potential in smallholder production systems. An important diversity descriptor is the content of tannins influencing feed and litter …

Managing Grassy Woodlands: Balancing Production And Conservation Of Resources, John G. Mcivor, Neil D. Macleod, S. Mcintyre

IGC Proceedings (1977-2023)

Eastern Australian eucalypt woodlands are important agricultural areas that have been widely modified during two centuries of European-style use. Despite this they contain important natural resources including significant biodiversity. Long term sustainability of production depends on maintaining resources and management must be for both production and conservation. A research program on four properties in south east Queensland showed the properties were in generally good condition although all had some problems, and has highlighted a number of significant costs and barriers to adopting a more balanced approach to production and conservation.

Biodiversity And Fire In Shortgrass Steppe, Paulette L. Ford

IGC Proceedings (1977-2023)

Effects of fire at two levels of intensity on beetle diversity in shortgrass steppe were examined. The experimental design was completely randomized, with 3 treatments and 4 replicates per treatment. Treatments were two levels of fire 1) dormant-season fire (relatively hot), and 2) growing-season fire (relatively cool), and unburned plots. The response variables were arthropod species richness and abundance. The intermediate disturbance hypothesis predicts that maximum species richness occurs at intermediate levels of disturbance. Data obtained in this study support that prediction. Species richness was higher on plots of intermediate fire intensity than the more intensely burned plots, and almost …

Global Patterns Of Potential Future Plant Diversity Hidden In Soil Seed Banks, Xuejun Yang, Carol C. Baskin, Jerry M. Baskin, Robin J. Pakeman, Zhenying Huang, Ruiru Gao, Johannes H. C. Cornelissen

Biology Faculty Publications

Soil seed banks represent a critical but hidden stock for potential future plant diversity on Earth. Here we compiled and analyzed a global dataset consisting of 15,698 records of species diversity and density for soil seed banks in natural plant communities worldwide to quantify their environmental determinants and global patterns. Random forest models showed that absolute latitude was an important predictor for diversity of soil seed banks. Further, climate and soil were the major determinants of seed bank diversity, while net primary productivity and soil characteristics were the main predictors of seed bank density. Moreover, global mapping revealed clear spatial …

Diversity Of The Fanged-Frog Complex, Limnonectes Kuhlii (Anura: Dicroglossidae) On The Mountainous Regions Of Java And Sumatra, Indonesia, Thornton Robert Larson

Biology Dissertations - Archive

The cryptic species complex, Limnonectes kuhlii, previously was considered to have a large range across Southeast Asia. Recent works have started to identify species within the complex using primarily genetic methodologies. The largest absence in elucidating these relationships comes down to sampling. Traditionally sampling across Southeast Asia has been challenging, limiting sampling across the entirety of a species range. Nowhere is this more apparent than in Indonesia. Indonesia has been highlighted as a biogeographical hotspot for species despite limited sampling on any of the main or smaller islands across the archipelago. Countries such as Malaysia and Papua New Guinea that …

Preliminary Results Of Measurements Of Potentially Cancerogenic 1,4-Dioxane In Surface Water Of Twin Lakes Preserve, Wantagh, Ny, Lijo Jose Varghese

Legacy Theses & Dissertations (2009 - 2024)

1,4-dioxane is a volatile organic compound categorized by the United States Environmental Protection agency (EPA, 2017) as a possible human carcinogen potent to cause tumors in humans. Even though this compound poses significant environmental danger when it contaminates water sources, it is surprisingly less studied, and how it behaves in surface water is less understood. The biggest 1,4-dioxane plume in the United States is located in Long Island region of New York. The purpose of this study was to investigate the presence of 1,4-dioxane in surface water and document the influence of existing 1,4-dioxane plume to Twin Lakes Preserve. To …

Opposing Community Assembly Patterns For Dominant And Nondominant Plant Species In Herbaceous Ecosystems Globally, Carlos Alberto Arnillas, Elizabeth T. Borer, Eric W. Seabloom, Juan Alberti, Selene Baez, Jonathan D. Bakker, Elizabeth H. Boughton, Yvonne M. Buckley, Miguel Nuno Bugalho, Ian Donohue, John Dwyer, Jennifer Firn, Riley Gridzak, Nicole Hagenah, Yann Hautier, Aveliina Helm, Anke Jentsch, Johannes M. H. Knops, Kimberly J. Komatsu, Lauri Laanisto, Rebecca L. Mcculley

Plant and Soil Sciences Faculty Publications

Biotic and abiotic factors interact with dominant plants—the locally most frequent or with the largest coverage—and nondominant plants differently, partially because dominant plants modify the environment where nondominant plants grow. For instance, if dominant plants compete strongly, they will deplete most resources, forcing nondominant plants into a narrower niche space. Conversely, if dominant plants are constrained by the environment, they might not exhaust available resources but instead may ameliorate environmental stressors that usually limit nondominants. Hence, the nature of interactions among nondominant species could be modified by dominant species. Furthermore, these differences could translate into a disparity in the phylogenetic …

Tropical Forage Genetic Resources -- Will Any Be Left For Future Generations?, B. L. Maass, B. C. Pengelly

IGC Proceedings (1977-2023)

After very active years of pasture and forage research at major institutes, interest in tropical forage genetic resources has drastically declined. Apparently, the early phases of collecting and evaluation were much more valued than conserving and keeping the germplasm available for future generations. Accumulated data are not easily accessible and, therefore, the knowledge of tropical forage genetic resources is progressively being lost. This worldwide decrease in activity and loss of knowledge is due to declining resources. It is suggested that a global database on tropical forage genetic resources should be established and also that finances be made available to at …

First Ecological Characterization Of Whip Black Coral Assemblages (Hexacorallia: Antipatharia) In The Easter Island Ecoregion, Southeastern Pacific, Jan M. Tapia-Guerra, Cynthia M. Asorey, Erin E. Easton, Daniel Wagner, Matthias Gorny, Javier Sellanes

School of Earth, Environmental, & Marine Sciences Faculty Publications

One of the main priorities of marine scientific research is to provide practical information and guidance for biodiversity conservation and management. In this context, the identification of key and fragile habitat-forming species is particularly important. Despite their ecological importance, whip corals in the order Antipatharia remain poorly studied around the world, and especially in the South Pacific. During recent expeditions to explore mesophotic and deep benthic habitats around Rapa Nui (Easter Island), dense assemblages of whip black corals were observed in situ. We here report the first detailed description of the distribution and abundance of these black coral assemblages …

Two New Species Of Hermeuptychia From North America And Three Neotype Designations (Nymphalidae: Satyrinae), Qian Cong, Eduardo P. Barbosa, Mario A. Marín, André V. L. Freitas, Gerardo Lamas, Nick V. Grishin

The Taxonomic Report of the International Lepidoptera Survey

Abstract

Two new species of Hermeuptychia Forster, 1964 are described. Hermeuptychia sinuosa Grishin, sp. n. (type locality Guatemala: El Progreso, Morazán) is an isolated member of the genus that does not readily fit into known species groups, as suggested by its distinct male and female genitalia and COI DNA barcode sequences. It is distinguished from its congeners by prominently wavy submarginal lines, rounder wings and distinctive genitalia, and can typically be identified by a white dot, instead of an eyespot, near the ventral hindwing apex. Hermeuptychia occidentalis Grishin, sp. n. (type locality Mexico: Guerrero, Acapulco) belongs to the Hermeuptychia sosybius …

Implications Of Community-Based Management Of Marine Reserves In The Philippines For Reef Fish Communities And Biodiversity, Sara E. Marriott, Courtney Cox, Rizaller C. Amolo, Dean Apistar, Roquelito H. Mancao, Kim De Mutsert

Faculty Publications

Overfishing and destructive fishing practices are major threats to marine biodiversity in the Philippines, where over 1.9 million small-scale fishers are supported by these biodiverse marine communities. Nearly 50% of all marine fish capture in the Philippines is from artisanal fisheries, with much of it not reported or under-reported. Marine reserves, where fishing is prohibited have been created in many local government units to help restore and preserve this biodiversity. The success of these marine reserves is still under serious debate with effective management still representing a significant challenge. The lack of a governance system to centrally managed marine reserves …

A Systematic Review Of Ecological And Production Outcomes Under Rest-Grazing Systems, S. E. Mcdonald, R. Lawrence, R. Rader

IGC Proceedings (1977-2023)

With increasing pressure on grazing lands throughout the world, there is a growing need to balance sustainable management of livestock to meet food production and environmental impacts. Grazing management practices that incorporate periods of planned rest between grazing events (RG) may achieve both ecological and production goals simultaneously. We conducted a systematic review of global literature that compared ecological and production outcomes of RG systems with either continuously grazed (CG) or ungrazed (UG) areas. In addition, we evaluated the extent to which ecological and livestock production outcomes have been assessed simultaneously in these studies and identified future research needs. A …

Counteracting Green Alder Shrub Expansion By Low-Input Grazing, M. K. Schneider, T. Zehnder, J. Berard, C. Pauler, M. Staudinger, Michael Kreuzer, A. Lüscher

IGC Proceedings (1977-2023)

In the past decades, the decline of traditional agriculture has caused an abandonment of marginal pastures in many mountain areas of Europe. In the Swiss Alps, green alder (Alnus viridis) is the most abundant successional shrub. A survey of 24 pasture-shrub gradients showed that the encroachment by green alder, in contrast to other shrubs, is associated with a substantial decline in plant species richness. The understorey of alder is primarily populated by very few, broad-leaved herbaceous species benefitting from the atmospheric nitrogen fixed by actinomycetes in symbiosis with green alder. However, the understory vegetation also provides an underestimated …

Algal Biodiversity Survey Of The Middle Chattahoochee River Using Dna Metabarcoding, Amanda Howell

Theses and Dissertations

Aquatic plants play vital roles in water systems by providing ecological services, and one group that is understudied is algae. Algae play a crucial role in water systems as bioindicators and primary producers. They can be challenging to identify with the naked eye, so researchers have been using DNA metabarcoding, where DNA belonging to specific taxa can be isolated and identified from water samples. The objective of this study was to conduct an algal biodiversity survey on the middle Chattahoochee River system in Georgia. Water samples (1L) were filtered and sent to RTL Genomics for sequencing and processing; the data …

Assemblages Of Acari In Shallow Burials: Mites As Markers Of The Burial Environment, Of The Stage Of Decay And Of Body‑Cadaver Regions, Jas K. Rai, Brian J. Pickles, M. Alejandra Perotti

Harold W. Manter Laboratory of Parasitology: Library Materials

The burial of a cadaver results in reduced arthropod activity and disruptions in colonisation patterns. Here, the distribution and diversity of mite taxa was studied across decomposition stages of shallowly buried pig carcasses (Sus scrofa domesticus). In total 300 mites (88 species) were collected from three pig shallow graves compared to 129 mites (46 species) from control (bare) soil samples at the same depth. A successional pattern of Acari higher taxa and families was observed, and species richness and biodiversity fluctuated throughout decomposition, whereas active decay showed the greatest biodiversity. Mesostigmata mites were the most abundant in ‘cadaver …

Megafauna Of The German Exploration Licence Area For Seafloor Massive Sulphides Along The Central And South East Indian Ridge (Indian Ocean), Klaas Gerdes, Terue Cristina Kihara, Pedro Martínez Arbizu, Thomas Kuhn, Ulrich Schwarz-Schampera, Christopher L. Mah, Jon L. Norenburg, Thomas D. Linley, Kate Shalaeva, Enrique Macpherson, Dennis Gordon, Sabine Stöhr, Charles G. Messing, Simon Bober, Theresa Guggolz, Magdalini Christodoulou, Andrey Gebruk, Antonina Kremenetskaia, Andreas Kroh, Karen Sanamyan, Kathrin Bolstad, Leon Hoffman, Andrew J. Gooday, Tina Molodtsova

Marine & Environmental Sciences Faculty Articles

Background

The growing interest in mineral resources of the deep sea, such as seafloor massive sulphide deposits, has led to an increasing number of exploration licences issued by the International Seabed Authority. In the Indian Ocean, four licence areas exist, resulting in an increasing number of new hydrothermal vent fields and the discovery of new species. Most studies focus on active venting areas including their ecology, but the non-vent megafauna of the Central Indian Ridge and South East Indian Ridge remains poorly known.

In the framework of the Indian Ocean Exploration project in the German license area for seafloor massive …