Life Sciences Commons^™

Weed Incursion Of Irrigated Forage–Forb Mixtures Under Mob Grazing Or Mowing In The Mountain West Usa, Jennifer Macadam, Jared Gibbons, Xin Dai

Plants, Soils, and Climate Faculty Publications

Improving the quality of irrigated pastures can increase the profitability of ruminant production systems. Increasing pasture plant biodiversity is beneficial for ruminants, pollinators, and soil health, but it is challenging to manage weed incursion in seeded mixed-species pastures. This study assessed the weed incursion that resulted when forage legumes or grasses were seeded as binary mixtures with one of four non-legume forbs. Defoliation occurred at 6-week intervals as either mowing or mob grazing. Forbs were chicory, plantain, Lewis flax, or small burnet and forages were alfalfa, birdsfoot trefoil, creeping foxtail, intermediate wheatgrass, kura clover, meadow bromegrass, orchardgrass, perennial ryegrass, reed …

Stem Cell Activity-Coupled Suppression Of Endogenous Retrovirus Governs Adult Tissue Regeneration, Ying Lyu, Soo Jin Kim, Ericka S Humphrey, Richa Nayak, Yinglu Guan, Qingnan Liang, Kun Hee Kim, Yukun Tan, Jinzhuang Dou, Huandong Sun, Xingzhi Song, Priyadharsini Nagarajan, Kamryn N Gerner-Mauro, Kevin Jin, Virginia Liu, Rehman H Hassan, Miranda L Johnson, Lisa P Deliu, Yun You, Anurag Sharma, H Amalia Pasolli, Yue Lu, Jianhua Zhang, Vakul Mohanty, Ken Chen, Youn Joo Yang, Taiping Chen, Yejing Ge

Faculty, Staff and Student Publications

Mammalian retrotransposons constitute 40% of the genome. During tissue regeneration, adult stem cells coordinately repress retrotransposons and activate lineage genes, but how this coordination is controlled is poorly understood. Here, we observed that dynamic expression of histone methyltransferase SETDB1 (a retrotransposon repressor) closely mirrors stem cell activities in murine skin. SETDB1 ablation leads to the reactivation of endogenous retroviruses (ERVs, a type of retrotransposon) and the assembly of viral-like particles, resulting in hair loss and stem cell exhaustion that is reversible by antiviral drugs. Mechanistically, at least two molecularly and spatially distinct pathways are responsible: antiviral defense mediated by hair …

Can Animal Consciousness Be Resolved Scientifically?, Yoram Gutfreund

Animal Sentience

Carolyn Ristau's biography of Donald Griffin is a comprehensive work that sheds light on a seminal chapter in the history of ethology—the ambitious attempt to establish a research field dedicated to animal consciousness. Although Donald Griffin's endeavor ultimately fell short of its revolutionary goals, it catalyzed significant progress in understanding evolution and mechanisms of animal cognition.

Beyond Human Perception: The Remarkable Science Of Donald R. Griffin, Gareth Jones

Animal Sentience

Carolyn Ristau shows how Donald Griffin’s revolutionary science sometimes progressed from ridicule, to opposition, to being self-evident. Griffin’s work involved phenomena beyond human perception, making it sometimes difficult for others to fathom. His work on ultrasonic echolocation, navigation and animal cognition has shifted established paradigms. His ‘zoomorphic’ approach provides a realistic framework for understanding how other animals perceive the world.

Function Over Form: The Benefits Of Aspen As Surrogate Brood-Rearing Habitat For Greater Sage-Grouse, Michel T. Kohl, Charles P. Sandford, Paul C. Rogers, Renee Chi, Terry A. Messmer, David K. Dahlgren

Aspen Bibliography

Species of conservation concern are often habitat specialists, posing significant risk to those species when specific plant communities are threatened. As a result, practitioners habitually focus conservation efforts on these communities while ignoring ecological mechanisms that explain the wildlife–plant relationships. In doing so, practitioners may overlook alternative vegetation communities that could maintain wildlife populations under alternative conditions (e.g., climate change). Here, we term these areas surrogate habitat, defined as vegetation communities or resource sites that provide similar critical resources as conventional sites, and assess their potential for conservation using a case study of greater sage-grouse (Centrocercus urophasianus) on …

Microbial Diversity And Biogeochemical Interactions In The Seismically Active And Co2-Rich Eger Rift Ecosystem, Daniel Lipus, Zeyu Jia, Megan Sondermann, Robert Bussert, Alexander Bartholomäus, Sizhong Yang, Dirk Wagner, Jens Kallmeyer

College of Life Sciences Faculty Papers

The Eger Rift subsurface is characterized by frequent seismic activity and consistently high CO2 concentrations, making it a unique deep biosphere ecosystem and a suitable site to study the interactions between volcanism, tectonics, and microbiological activity. Pulses of geogenic H2 during earthquakes may provide substrates for methanogenic and chemolithoautotrophic processes, but very little is currently known about the role of subsurface microorganisms and their cellular processes in this type of environment. To assess the impact of geologic activity on microbial life, we analyzed the geological, geochemical, and microbiological composition of rock and sediment samples from a 238 m deep drill …

High Peripheral T Cell Diversity Is Associated With Lower Risk Of Toxicity And Superior Response To Dual Immune Checkpoint Inhibitor Therapy In Patients With Metastatic Nsclc, Mehmet Altan, Ruoxing Li, Ziyi Li, Runzhe Chen, Ajay Sheshadri, Hai T Tran, Latasha Little, Joshua Baguley, Jefferson Sinson, Natalie Vokes, Saumil Gandhi, Mara B Antonoff, Stephen G Swisher, Greg Lizee, Alexandre Reuben, John V Heymach, Jianjun Zhang

Faculty, Staff and Student Publications

INTRODUCTION: Despite significant successes, immune checkpoint blockade fails to achieve clinical responses in a significant proportion of patients, predictive markers for responses are imperfect and immune-related adverse events (irAEs) are unpredictable. We used T-cell receptor (TCR) sequencing to systematically analyze prospectively collected patient blood samples from a randomized clinical trial of dual immune checkpoint inhibitor therapy to evaluate changes in the T-cell repertoire and their association with response and irAEs.

METHODS: Patients with immunotherapy-naïve metastatic non-small cell lung cancer (NSCLC) were treated with ipilimumab and nivolumab according to trial protocol (LONESTAR, NCT03391869). Blood samples were systematically obtained at baseline (n=107), …

Mechanistic Insights Into Plant Community Responses To Environmental Variables: Genome Size, Cellular Nutrient Investments, And Metabolic Tradeoffs, Erika Hersch-Green, Philip A. Fay, Hailee B. Hass, Nicholas G. Smith

Michigan Tech Publications

Affecting biodiversity, plants with larger genome sizes (GS) may be restricted in nutrient-poor conditions. This pattern has been attributed to their greater cellular nitrogen (N) and phosphorus (P) investments and hypothesized nutrient–investment tradeoffs between cell synthesis and physiological attributes associated with growth. However, the influence of GS on cell size and functioning may also contribute to GS-dependent growth responses to nutrients. To test whether and how GS is associated with cellular nutrient, stomata, and/or physiological attributes, we examined > 500 forbs and grasses from seven grassland sites conducting a long-term N and P fertilization experiment. Larger GS plants had increased cellular …

Changes In Climate And Their Implications For Cattle Nutrition And Management, Bashiri Iddy Muzzo, R. Douglas Ramsey, Juan J. Villalba

Wildland Resources Faculty Publications

Climate change is a global challenge that impacts rangeland and pastureland landscapes by inducing shifts in temperature variability, precipitation patterns, and extreme weather events. These changes alter soil and plant conditions, reducing forage availability and chemical composition and leading to nutritional stress in cattle. This stress occurs when animals lack adequate water and feed sources or when these resources are insufficient in quantity, composition, or nutrient balance. Several strategies are essential to address these impacts. Genetic selection, epigenetic biomarkers, and exploration of epigenetic memories present promising avenues for enhancing the resilience of cattle populations and improving adaptation to environmental stresses. …

An Ontology-Based Approach For Understanding Appendicectomy Processes And Associated Resources, Nadeesha Pathiraja Rathnayaka Hitige, Ting Song, Steven J Craig, Kimberley J Davis, Xubing Hao, Licong Cui, Ping Yu

Faculty, Staff and Student Publications

Background: Traditional methods for analysing surgical processes often fall short in capturing the intricate interconnectedness between clinical procedures, their execution sequences, and associated resources such as hospital infrastructure, staff, and protocols.

Aim: This study addresses this gap by developing an ontology for appendicectomy, a computational model that comprehensively represents appendicectomy processes and their resource dependencies to support informed decision making and optimise appendicectomy healthcare delivery.

Methods: The ontology was developed using the NeON methodology, drawing knowledge from existing ontologies, scholarly literature, and de-identified patient data from local hospitals.

Results: The resulting ontology comprises 108 classes, including 11 top-level classes and …

Determination Of The Kinetic Parameters Of Cholesterol Oxidation Using Cholesterol Oxidase From Streptomyces Sp., Meka Saima Perdani, Heri Hermansyah, Muhamad Sahlan, Dwini Normayulisa Putri, Teguh Pambudi, Anggi Khairina Hanum Hasibuan

Makara Journal of Technology

Cholesterol oxidase (CO) was successfully produced from Streptomyces sp. via the submerged fermentation method, and 69 U/mL enzyme activity was obtained. This study aimed to determine cholesterol oxidation kinetics and the production of CO as a catalyst. The enzyme was diluted to 0.15, 0.075, and 0.00375 U/mL for the oxidation reaction. The substrate was also prepared in three concentrations: 3.23, 6.46, and 12.93 mM. The optimization of conditions for enzymatic cholesterol oxidation was investigated through measurement of the effect of initial cholesterol and enzyme concentrations. Cholesterol concentration was rapidly measured via high-performance liquid chromatography (HPLC). The kinetics of CO were …

From The Ocean To Our Kitchen Table: Anthropogenic Particles In The Edible Tissue Of U.S.. West Coast Seafood Species, Summer D. Traylor, Elise F. Granek, Marilyn Duncan, Susanne Brander

Environmental Science and Management Faculty Publications and Presentations

Microplastics (MPs) and other anthropogenic particles (APs) are pervasive environmental contaminants found throughout marine and aquatic environments. We quantified APs in the edible tissue of black rockfish, lingcod, Chinook salmon, Pacific herring, Pacific lamprey, and pink shrimp, comparing AP burdens across trophic levels and between vessel-retrieved and retail-purchased individuals. Edible tissue was digested and analyzed under a microscope, and a subset of suspected APs was identified using spectroscopy (μFTIR). Anthropogenic particles were found in 180 of 182 individuals. Finfish contained 0.02–1.08 AP/g of muscle tissue. In pink shrimp (Pandalus jordani), the average AP/g was 10.68 for vessel-retrieved and …

Targeted Degradation Of Oncogenic Krasg12v Triggers Antitumor Immunity In Lung Cancer Models, Dezhi Li, Ke Geng, Yuan Hao, Jiajia Gu, Saurav Kumar, Annabel T Olson, Christina C Kuismi, Hye Mi Kim, Yuanwang Pan, Fiona Sherman, Asia M Williams, Yiting Li, Fei Li, Ting Chen, Cassandra Thakurdin, Michela Ranieri, Mary Meynardie, Daniel S Levin, Janaye Stephens, Alison Chafitz, Joy Chen, Mia S Donald-Paladino, Jaylen M Powell, Ze-Yan Zhang, Wei Chen, Magdalena Ploszaj, Han Han, Shengqing Stan Gu, Tinghu Zhang, Baoli Hu, Benjamin A Nacev, Medard Ernest Kaiza, Alice H Berger, Xuerui Wang, Jing Li, Xuejiao Sun, Yang Liu, Xiaoyang Zhang, Tullia C Bruno, Nathanael S Gray, Behnam Nabet, Kwok-Kin Wong, Hua Zhang

Faculty, Staff and Student Publications

Kirsten rat sarcoma viral oncogene homolog (KRAS) is the most frequently mutated oncogene in lung adenocarcinoma, with G12C and G12V being the most predominant forms. Recent breakthroughs in KRASG12C inhibitors have transformed the clinical management of patients with the G12C mutation and advanced our understanding of the function of this mutation. However, little is known about the targeted disruption of KRASG12V, partly due to a lack of specific inhibitors. Here, we leverage the degradation tag (dTAG) system to develop a KRASG12V-transgenic mouse model. We explored the therapeutic potential of KRASG12V degradation and characterized its effect on the tumor microenvironment (TME). …

Increasing Youth Engagement In Community Heritage And Social Justice Through Implementation Of A Youth Participatory Empowerment Model, Jancarlos Wagner-Romero, Mary Gillis, Lindsay Clemens, Amanda J. Dworak Rowland, Curlinda Mitchell-Blacksheep, Melanie Canaday-Talley

Journal of Multicultural Affairs

Youth in traditionally marginalized communities are often the target of policies and practices without the opportunity to provide input. This article highlights effective strategies to empower youth to become active participants in their communities. Using a Youth Participatory Empowerment Model (YPEM), youth participants from six demographically distinct communities engaged in YPEM-supported activities and strategies to identify and address a need within their community. To gain insight into successful strategies, qualitative data from pre and post implementation focus group interviews and observational field notes informed the conclusions. The participant youth represent tribal, undocumented, rural, suburban, and urban youth from underserved populations. …

Farrowing Performance And Piglet Characteristics Of Highly Prolific Sows In A Tropical Environment, Yosua Kristian Adi, Roy N. Kirkwood, Padet Tummaruk

The Thai Journal of Veterinary Medicine

The swine industry has witnessed a remarkable increase in average litter size in recent decades, driven by genetic advancements and breeding programs aimed at enhancing prolificacy. This rise in hyperprolificacy has presented both opportunities and challenges, particularly in tropical environments where factors such as ambient temperature and humidity can influence reproductive performance. This review synthesizes current knowledge on farrowing performance and piglet characteristics of highly prolific sows in tropical settings. Studies have reported a consistent increase in litter size globally, leading to challenges in farrowing management and piglet survival. Factors such as elevated ambient temperatures and extended farrowing durations have …

Thriving Hives: Cleaning And Sterilizing Beekeeping Equipment, Brynn Meredith, Bailey Parkinson, Andree' Walker Bravo

All Current Publications

Honeybees are susceptible to many types of diseases and parasites, most of which can spread easily through equipment. Your hives' health and safety depend on your attention to detail and efforts to keep your equipment clean and sterile. This fact sheet lists several methods for sterilizing beekeeping equipment. The list is not exhaustive but includes some of the most cost-effective options.

Latitudinal Clines In An Ectothermic Vertebrate: Patterns In Body Size, Growth Rate, And Reproductive Effort Suggest Countergradient Responses In The Prairie Lizard, Travis R. Robbins, Tiffany Hegdahl

Biology Faculty Publications

Although we have evidence that many organisms are exhibiting declines in body size in response to climate warming, we have little knowledge of underlying mechanisms or how associated phenotypic suites may coevolve. The better we understand coadaptations among physiology, morphology, and life history, the more accurate our predictions will be of organismal response to changing thermal environments. This is especially salient for ectotherms because they comprise 99% of species worldwide and are key to functioning ecosystems. Here, we assess body size, growth rates, and reproductive traits of a vertebrate ectotherm, the prairie lizard, Sceloporus consobrinus, for multiple populations along …

Highway Crossing Rates Of Wild Felids Before, During, And After Wildlife Crossing Structure Installation, Sarah E. Lehnen, Mitch Sternberg, Hilary M. Swarts, John H. Young Jr., Victoria Hanley, Richard J. Kline

School of Earth, Environmental, & Marine Sciences Faculty Publications

In an environment increasingly dominated by roads, wildlife crossing structures (WCS) have been installed to decrease wildlife mortality and improve habitat linkages. In South Texas, vehicle collisions have been a major mortality source for the endangered ocelot ( Leopardus pardalis ). To mitigate threats to this species, eight WCS, along with associated fencing, were strategically placed along Farm‐to‐Market Road 106 (FM106), which passes through ocelot habitat. We assessed the rate of on‐roadway crossings and WCS use by GPS‐collared animals before, during, and after WCS installation using camera traps to verify WCS use. Because of the rarity of ocelots in this …

Quantitative Approaches To Unravel The Mechanobiology Of Cortical Folding, Ramin Balouchzadeh

McKelvey School of Engineering Graduate Student Theses & Dissertations

Quantitative Approaches to Unravel the Mechanobiology of Cortical Folding by Ramin Balouchzadeh Doctor of Philosophy in Mechanical Engineering Washington University in St. Louis, 2024 Professor Philip V. Bayly, Chair Professor Kara E. Garcia, Co-Chair Brain development is a highly complex process driven by mechanical forces and material properties that shape the cerebral cortex’s characteristic gyri and sulci. Abnormalities in this folding pro?cess are associated with neurodevelopmental disorders such as autism and schizophrenia. Despite significant advancements, the underlying mechanical principles governing brain morphogenesis remain incompletely understood. This body of work investigates three key aspects of brain de?velopment: stress-dependent growth, evolving tissue …

Scorpiops Reini Sp. N. From Yunnan, China (Scorpiones: Scorpiopidae), Victoria Tang

Euscorpius

Scorpiops reini sp. n. is described from Yingjiang County (Dehong Prefecture, Yunnan Province) based on an adult pair. It can be readily discriminated from all of its congeneric geographic neighbors in Yunnan, namely S. jendeki Kovařík, 1994, S. shidian (Zhu et al., 2005), S. tongtongi Tang, 2022, and S. zhangshuyuani (Ythier, 2019). Within Yunnan, it resembles S. validus (Di et al., 2010) and S. yangi (Zhu et al., 2007) most, but can be identified by its large median ocelli (relative to the width of ocular subislet), pedipalp chelal finger morphology and pectinal tooth count. Beyond Yunnan, it shows the highest …

Co2 In Flowing Freshwaters: Macro Scale Database Compilation, Addressing Ph Bias In Co2 Estimates, And Quantifying Cross-Scale Interactions, Timothy R. Toavs

LSU Doctoral Dissertations

This dissertation focuses on carbon dioxide (CO₂) dynamics in flowing freshwaters, contributing to the growing body of knowledge about inland water carbon cycles. The research is structured into three main chapters, each progressing towards the objective of utilizing variability in flowing freshwaters to further understand carbon dynamics, anthropogenic land cover impacts, and potential impacts from a changing climate. Chapter one compiles a 30-year dataset of pCO₂ measurements from flowing freshwater systems across the contiguous United States. This dataset, referred to as CDFLOW, includes over 750,000 pCO₂ estimates from more than 35,000 locations. It serves …

Regulation And Function Of Mec-2 Alternative Splicing In Single Cells, Canyon Calovich-Benne

Biological Sciences Theses and Dissertations

One mechanism for generating diversity at the single cell level is selective expression of a unique set of transcription factors (TFs) and RNA binding proteins (RBPs). These regulatory factors contribute to functions of cells by controlling cell fate, turning genes on and off, and processing of transcripts either co- or post-transcriptionally. Many genes, especially neuronal genes, have multiple different splicing events, promoters, and/or polyadenylation sites. Post-transcriptional coordination is in the infancy of being studied and the functional consequences of this coupling at the single cell level has yet to be explored. Here we show, mec-2 coordination of alternative transcription start …

Bat Cutaneous Microbial Assemblage Functional Redundancy Across A Host-Mediated Disturbance, Matthew Grisnik, Donald M. Walker

Biology

Understanding the processes and factors that influence the structure of host-associated microbial assemblages has been a major area of research as these assemblages play a role in host defense against pathogens. Previous work has found that bacterial taxa within bat cutaneous microbial assemblages have antifungal capabilities against the emerging fungal pathogen, Pseudogymnoascus destructans. However, our understanding of natural fluctuations in these cutaneous microbial assemblages over time due to shifts in host habitat is lacking. The objective of this work was to understand how the taxonomic and functional bat cutaneous microbial assemblage responds to seasonal shifts in host habitat. We hypothesized …

Microwell Fabrication For Impedance And Ac Measurements Of Isolated Ventricular Cardiomyocytes, Fallon Wenck

Multidisciplinary Studies Theses and Dissertations

Electrophysiological behavior of human hearts have been extensively studied for hundreds of years. Even with elucidation of not just biological function, but also time and frequency-dependent current flow, the sheer intricacy of in vivo cardiac tissue function remains somewhat enigmatic. All while heart disease has been the leading cause of death in the United States for over a century, with its rates of occurrence still increasing annually [1]. Thus, new research techniques and tools to quantify cardiac function are still being pursued at smaller and smaller scales to decrease research/innovation time, cost, and diagnostic ambiguity. In fact, it remains incredibly …

Inhibition Of Microrna-660-5p Decreases Breast Cancer Progression Through Direct Targeting Of Tmem41b, Valeria Villarreal-García, José Roberto Estupiñan-Jiménez, Vianey Gonzalez-Villasana, Pablo E Vivas-Mejía, Marienid Flores-Colón, Irma Estefanía Ancira-Moreno, Patricio Adrián Zapata-Morín, Claudia Altamirano-Torres, José Manuel Vázquez-Guillen, Cristina Rodríguez-Padilla, Recep Bayraktar, Mohamed H Rashed, Cristina Ivan, Gabriel Lopez-Berestein, Diana Reséndez-Pérez

Faculty, Staff and Student Publications

Background: Breast cancer is the most prevalent cancer among women worldwide. Most breast cancer-related deaths result from metastasis and drug resistance. Novel therapies are imperative for targeting metastatic and drug-resistant breast cancer cells. Accumulating evidence suggests that dysregulated microRNAs (miRNAs) promote breast cancer progression, metastasis, and drug resistance. Compared with healthy breast tissue, miR-660-5p is notably overexpressed in breast cancer tumor tissues. However, the downstream effectors of miR-660-5p in breast cancer cells have not been fully elucidated. Our aim was to investigate the role of miR-660-5p in breast cancer cell proliferation, migration, invasion, and angiogenesis and to identify its potential …

Optimization Of The Starch Chitosan-Based Flocculant Crosslinked By Ethylene Glycol Dimethacrylate On Removing Dypro 19 Textile Dye From Wastewater, Asep Nurohmat Majalis, Putri Ramadhani, Hendris Hendarsyah Kurniawan, Axel Dimaz Sanusi Pasaribu, Hafiizh Prasetia, Fitri Yuliani, Andreas Andreas, Hartati Hartati

Karbala International Journal of Modern Science

Dyes used in industry, especially textile dyes, are one of the water pollutants that receive much attention because they are potentially toxic, carcinogenic, mutagenic, and generally challenging to decompose naturally. Textile dyes from wastewater can be removed through coagulation-flocculation. However, conventional coagulation-flocculation based on Fe and Al salts and synthetic polymers often leaves residual pollution. In this research, the performance of the new biopolymer-based flocculant, namely starch-ethylene glycol dimetacrylate-chitosan (SEC), which can act as coagulants and flocculants in solid-liquid separation of textile dyes, has been optimized using response surface methodology (RSM) approach. The influences of several independent variables, such …

Breast Cancer Area Identification In Mammograms Using Expectation Maximization Gaussian Mixture Model, Rizki Khoirun Nisa, Dian Kurniasari, Favorisen R. Lumbanraja, Warsono Warsono

Karbala International Journal of Modern Science

Breast cancer accounts for 25% of all cancer diagnoses and 16% of cancer-related deaths among women globally, with high mortality rates due to late diagnosis. Early detection relies on imaging techniques such as mammography, histopathology, and breast ultrasound, with mammography being the gold standard due to its proven to detect breast cancer, thus it is effective for breast cancer treatment. However, mammogram images often produce noise and artefacts, complicating early-stage cancer detection and emphasizing the need for advanced image processing. Clustering algorithms such as K-means and Expectation Maximization - Gaussian Mixture Model (EM-GMM) have shown potential in image segmentation. This …

First‑Year Post‑Fire Alterations Of Scots Pine Forest: Composition, Relationships, Ecological Consequences, Olena Blinkova, Liudmyla Raichuk, Iryna Mcdonald

Agriculture Faculty Publications

Context Forest fires are key ecological factors affecting pine forests globally. Understanding impacts of varying fire intensities on forest ecosystem components is crucial for predicting recovery and informing management. Objectives This study aimed to assess effects of different surface fire intensities on structural components of pine forests, including tree canopy, herbaceous layer, and surface soil horizons, and identify relationships between fire intensity and ecosystem parameters. Methods The study examined three areas with different fire intensities (severe, moderate, mild) 1 year after a surface fire in Ukraine’s Volyn-Polissia region,

using vegetation surveys, soil analyses, and statistical methods. Results Fire intensity significantly …

Survival Analysis Of Clear Cell Renal Cell Carcinoma Based On Radiomics And Deep Learning Features From Ct Images, Zhennan Lu, Sijia Wu, Dan Ni, Meng Zhou, Tao Wang, Xiaobo Zhou, Liyu Huang, Yu Yan

Faculty, Staff and Student Publications

Purpose: To create a nomogram for accurate prognosis of patients with clear cell renal cell carcinoma (ccRCC) based on computed tomography images.

Methods: Eight hundred twenty-two ccRCC patients with contrast-enhanced computed tomography images involved in this study were collected. A rectangular region of interest surrounding the tumor was used to extract quantitative radiomics and deep-learning features, which were filtered by Cox proportional hazard regression model and least absolute shrinkage and selection operator. Then the selected features formed a fusion signature, which was assessed by Cox proportional hazard regression model method, Kaplan-Meier analysis, receiver operating characteristic curves, and concordance index (C-index) …

Interactions Of The Sars-Cov-2 Viral Genome 3’-Untranslated Region With Viral And Host Rnas, Caleb Frye, Mihaela Rita Mihailescu

Electronic Theses and Dissertations

This dissertation focuses on the characterization of RNA-RNA interactions within the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) genome and with host microRNAs. As the causative agent of coronavirus disease 2019 (COVID-19), SARS-CoV-2 has evolved rapidly since its appearance. This has warranted prompt characterization of the virus particularly of its single stranded RNA (ssRNA) genome. By using a combination of bioinformatics, biophysics, and/or biological assays, we analyzed the SARS-CoV-2 viral genomic RNA and uncovered interactions of genomic RNA with host RNAs, highlighting an underutilized method of targeting RNA viruses. We showed here that the conserved elements in the viral genomic …