Life Sciences Commons^™

Intraspecific Variability Of Rice Root Knot Nematodes Across Diverse Agroecosystems For Sustainable Management, Sandip Mondal, Arnab Purohit, Anjan Hazra, Sampa Das, Manohar Chakrabarti, Matiyar Rahaman Khan, Horacio Lopez-Nicora, Dipankar Chakraborti, Abhishek Mukherjee

School of Integrative Biological & Chemical Sciences Faculty Publications

In the rice agroecosystems of Southeast Asia, rice root knot nematode (Meloidogyne graminicola) significantly impairs yield, representing a major species within the ‘graminis-group’ known for its morphological similarities with other root knot nematodes (RKNs). This study delves into the variations in reproductive potential, morphology, morphometrics, and genetic diversity among thirty RKN populations in rice across three distinct agroecological zones in Jharkhand, India. Despite notable differences in reproductive potential among the populations, morphological and morphometric correlations to reproductive potential were inconclusive. However, male and juvenile morphometrics were crucial for identifying intraspecific variability. Genetic analysis utilizing five molecular markers (ITS, …

Sympathetic Innervation Of Interscapular Brown Adipose Tissue Is Not A Predominant Mediator Of Ot-Elicited Reductions Of Body Weight Gain And Adiposity In Male Diet-Induced Obese Rats, Melise Edwards, Ha Nguyen, Andrew Dodson, Adam Herbertson, Mackenzie Honeycutt, Jared Slattery, June Rambousek, Edison Tsui, Tami Wolden-Hansen, Tomasz Wietecha, James Graham, Geronimo Tapia, Carl Sikkema, Kevin O'Brien, Thomas Mundinger, Elaine Peskind, Vitaly Ryu, Peter Havel, Arshad Khan, Gerald Taborsky, James Blevins

Selected Works Temporary Series

Recent studies indicate that central administration of oxytocin (OT) reduces body weight (BW) in high fat diet-induced obese (DIO) rodents by reducing energy intake and increasing energy expenditure (EE). Previous studies in our lab have shown that administration of OT into the fourth ventricle (4V; hindbrain) elicits weight loss and stimulates interscapular brown adipose tissue temperature (TIBAT) in DIO rats. We hypothesized that OT-elicited stimulation of sympathetic nervous system (SNS) activation of IBAT contributes to its ability to activate BAT and reduce BW in DIO rats. To test this, we determined the effect of disrupting SNS activation of IBAT on …

Smokejumper Obituary: Cook, James Edward "Jim" (North Cascades 1960), National Smokejumper Association

Smokejumper Obituaries

No abstract provided.

The Power Of Plate & Knowledge: Nutrition’S Role In Pcos Management For Asian American Women, Cassandra Camille Diego Curameng

Nursing | Student Research Posters

Polycystic ovarian syndrome (PCOS) is a metabolic endocrine disorder affecting 8–11% of women worldwide, with 70% remaining undiagnosed (WHO, 2023). It presents with symptoms such as irregular menstrual cycles, insulin resistance, high testosterone levels, anxiety, depression, and infertility, significantly impacting quality of life and health (OASH, 2021). The symptoms of PCOS can severely impact women’s quality of life, mental health, and long-term well-being. Insulin resistance contributes to symptom severity and a 50% likelihood of developing diabetes or prediabetes by age 40 (Wang et al., 2011). Women with PCOS face a threefold increased risk of endometrial, ovarian, and breast cancers (Barry …

Role Of Nanoparticles In Mitigating Chromium Toxicity: Implications, Mechanisms, Andfuture Prospects, Muhammad Umair Hassan, Adnan Noor Shah, Muhammad Nawaz, Muhammad Inzamam-Ul-Haq, Tahir Abbas Khan, Mehmood Ali Noor, Fang Luo, Rehab O. Elnour, Mohamed Hashem, Huang Guoqin

Turkish Journal of Agriculture and Forestry

Chromium (Cr) is an extremely toxic metal for all living organisms and its concentration in the environment is constantly increasing due to human activities. Plants quickly absorb the Cr subsequently, it enters the human food chain and poses serious health issues. Chromium toxicity causes a serious reduction in plant growth by inducing oxidative damage and disturbing protein synthesis, enzyme activity, and nutrient uptake. Plants use diverse mechanisms to mitigate the Cr toxicity however, they are inadequate against higher concentrations of Cr. Thus is essential to diminish Cr toxicity and increase the ability of plants to tolerate Cr stress. Nano-particles (NPs) …

Coriander (Coriandrum Sativum L.) Diversity Analysis: Insights From Germplasm Resources Leading To Crop Improvement, Amit Baran Sharangi, Solanki Bal, Anirban Maji, Tarun Kumar Upadhyay, Reem Binsuwaidan, Nawaf Alshammari, Nadiyah M. Alabdallah, Adesh Kolapkar, Mohd Saeed

Turkish Journal of Agriculture and Forestry

Coriander, an important herb, is popular throughout the globe essentially as a spice. The current research was conducted at BCKV (Agricultural University), India to study on genetic variability and diversity amongst selected genotypes. A few phenological, morphological, and yield attributing traits viz., days to 50% flowering, plant height, number of basal leaves/plant, number of primary branches/plant, number of secondary branches/plant, number of umbels/plant, number of umbellates/umbel, number of seeds/umbel, test weight and seed yield/plant expressed high heritability and genetic advance as percent of mean. Such traits were least influenced by environment suggesting the role of additive gene action in their …

The Purification, Characterization, And Inhibition Profile Of Some Herbicides Ofglutathione S-Transferase From Broccoli, Hacer Erdem Kiziltunç, Hali̇s Şaki̇roğlu, Mi̇ne Aksoy

Turkish Journal of Agriculture and Forestry

Herbicide selectivity is determined by the variability of herbicide degradation processes in weeds and crops. GlutathioneS-transferases (GSTs) have been widely studied in plants because of their role in herbicide metabolism. GSTs metabolize herbicides bycatalyzing reduced glutathione (GSH) conjugation. The significance of GSTs in herbicide metabolism has been understood by examiningGST in some plants. In this study, a GST enzyme was purified from broccoli using an affinity chromatography (glutathione agarose)method to contribute to the elucidation of plant GSTs. A characterization of the purified broccoli GST enzyme was then carried out.In the last step, the inhibition profiles of some selected types of …

In Silico Analysis Of Three-Amino Acid Loop Extension (Tale) Proteins In Phaseolusvulgaris L. And Investigation Of Their Transcript Levels In Response To Drought Stress, Fatma Nur Avci, Tarik Kirlioğlu, Aybüke Okay, Emi̇ne Sümer Aras, İlker Büyük

Turkish Journal of Agriculture and Forestry

Drought represents a major global threat to the environment, thus leading to food insecurity. Transcription factors (TFs) have a significant role in regulating the expression of stress-related genes. TALE genes, a type of TF, are known to regulate important biological processes like the maintenance of shoot apical meristems and root formation in plants. In this study, 35 TALE genes were identified and they were found to be categorized into KNOX-like homeodomain (KNOX) and BLH/BELL-like subfamilies in Phaseolus vulgaris according to the phylogenetic analysis. The detailed characterization of PvTALE genes using in silico analyzes further showed that segmental duplications predominate in …

Occurrence And Biodiversity Of Cyst Nematodes In Wheat And Barley Cultivation Areas Ofuşak Province, Türkiye, Seli̇n Türkay, Ebubeki̇r Yüksel, Refi̇k Bozbuğa, Di̇lek Di̇nçer, Ati̇lla Öcal, Furkan Ulaş, Muhammad Sameeullah, Abdelfettah Dababat, Mustafa İmren

Turkish Journal of Agriculture and Forestry

Plant parasitic nematodes (PPNs) are one of the major threats to various crops including cereals. In wheat and barleyproduction, the profitability of cultivation heavily depends on the management of cyst nematodes (CNs), especially on Heteroderaavenae, H. filipjevi, and H. latipons. In this study, field surveys were conducted in wheat and barley cultivation systems of Uşak Provinceto reveal the presence and diversity of PPNs. In total, 80 wheat and barley fields were surveyed, and samples (soil and root) wereprocessed for the isolation and identification of PPNs. The PPN genera were identified to the species level based on morphologicaland morphometric characters. CNs …

Maize Root-Soil Microbial Interactions And Their Effects On Soil Health And Yield, Wei Yang, Qiyuan Zhang, Hongyu Cai, Tianhang Bai, Xuejiao Ren

Turkish Journal of Agriculture and Forestry

In agroecosystems, interactions between maize root systems and soil microbes have significant effects on soil health and plant yield. In order to quantitatively assess the impact of this mutualism, the study used field experiments and soil analysis methods to analyze the effects of different sludge applications on soil physicochemical properties and microbial activity. The experiments were studied in a controlled trial with different sludge treatment gradients. The results showed that the sludge-applied soil exhibited positive changes in structure and biological activity compared to the control. The mass fraction of soil macro-aggregates increased after sludge treatment, from 48.9% to 51.1% after …

Glutathione Alleviates Boron Toxicity By Modulating Nitrogen Metabolism And Boronuptake In Rice Seedlings, Lei Zhang, Lizhu Suo, Yan Shan, Bo Wang

Turkish Journal of Agriculture and Forestry

Boron (B) toxicity is an abiotic stressor in plants due to the narrow threshold range between B deficiency and B toxicity.Glutathione (GSH) has been reported to reduce abiotic stress in plants, but its effect on B toxicity alleviation, particularly in riceseedlings, is not clear. Therefore, the present research yields information on the antioxidant mechanism, nitrogen metabolism, cell wallcomponents, and B concentrations that allow rice seedlings to withstand the adverse effects of B toxicity by GSH application. The resultssuggest that B toxicity suppressed the growth traits of rice. However, GSH treatment exhibited a positive influence on the growth ofrice seedlings. GSH …

Morphological And Physiological Root Traits And Expression Of The Gene Relationship Withnitrogen Uptake In Wheat (Triticum Aestivum L.), Hafeez Noor, Pengcheng Ding, Farhana Kausar, Fida Noor, Zhai Wenbo, Min Sun, Zhiqiang Gao, Sajid Faiz, Kotb A. Attia, Latifa Alhusnain

Turkish Journal of Agriculture and Forestry

Wheat (Triticum aestivum L.) is considered important cereal crops worldwide, ensuring food security post green revolution. Our study results displayed an elevation of 10.6% in root weight density, 15.0 % of root volume density during flowering stage, respectively. The highly significant values for root weight density, root length density and root bulk density were recorded under nitrogen application of 180 kh ha-1 both at flowering and maturity stage. Moreover, delayed senescence and increase in photosynthetic rate were observed during middle and late stages of flowering enhancing light energy interception and improvement in its utilization. The cultivar Yunhan-20410 exhibited a significant …

Advances In Hyperspectral Remote Sensing For Precision Fertilization Decision-Making: A Comprehensive Overview, Jing Nie, Ke Wu, Yang Li, Jingbin Li, Bohan Hou

Turkish Journal of Agriculture and Forestry

With the rapid development of Internet of Things (IOT), big data analysis, artificial intelligence and other technologies, precision agriculture is receiving more and more attention and emphasis worldwide. Precision agriculture (PA), also known as fine agriculture and precision agriculture, refers to an agricultural method that obtains spatial and temporal variability information on crop yields and environmental factors (e.g., soil structure, topography, plant nutrients, water content, pests and diseases, etc.) in farm plots through high-tech to achieve positioning, timing, and quantification of the implementation of modern farming operation techniques and management.And fertilizer application plays an indispensable role in agricultural production. Reasonable …

D101n: A Unique And Ill-Understood Familial Als-Related Sod1 Mutant, Analisa Lott

Honors Program Theses and Research Projects

Background: Amyotrophic Lateral Sclerosis (ALS) is a fatal neurodegenerative disease, with 90% of documented cases considered sporadic and about 10% showing a hereditary link; such cases are deemed as familial ALS (fALS). Superoxide dismutase (SOD), a copper-zinc binding enzyme that protects cells from damaging free radicals, has been linked to fALS with certain toxic gain of function mutations, such as the D101N mutant. The human SOD1 D101N mutant has been shown to be associated with rapidly progressing neurodegeneration yet is less prone to aggregation than similar mutants, but its deviation from wild-type (WT) SOD1 remains misunderstood.

Objective: Although the D101N …

Sustainable Carbon Footprint Growth Mechanism In Forest Systems Under Patterns Ofglobal Climate Change, Wenbo Zhang, Guangxu Liu

Turkish Journal of Agriculture and Forestry

Forests play a crucial role in regulating the global carbon cycle, but there are few existing studies on measuring the carbonfootprint of forest systems and analyzing the driving factors for sustained growth. This study investigated the carbon footprint of forestsystems, examined the driving factors behind their sustained growth under patterns of global climate change, and developed a researchmethodology to understand this sustained growth mechanism. To determine the carbon footprint and carbon-carrying capacity offorest systems, this study began with the impact of cities on forest systems and constructed a carbon footprint account for forest systems.Based on a relative growth model and …

Determination Of Turfgrass Varieties With High Green Area Performance And Winterhardiness For High-Altitude Regions, Abdullah Yazici, Mustafa Tan

Turkish Journal of Agriculture and Forestry

This study was conducted to determine the best turfgrass varieties to create green areas under long and cold winter conditionsin high-altitude regions. In 2018, 14 varieties of Lolium perenne, Festuca arundinacea, Poa pratensis, Festuca rubra, and Agrostis tenuiswere planted. In 2018 and 2019, the results of the turf quality parameters were evaluated. The research was carried out in a randomizedcomplete blocks experimental design with three replications at the Plant Production and Application Center of Atatürk Universityin Erzurum. Emergence speed, ground cover speed, the start date of growth in spring, the date of dormancy in autumn, the winterhardiness, the regeneration power …

Characterization Of Purple Basil (Ocimum Basilicum L.) Leave And Sherbet (A Traditional Beverage): Physico-Chemical And Volatile Compositions, And Sensory Properties, İsra Yi̇ği̇tvar, Ali̇ Adnan Hayaloğlu

Turkish Journal of Agriculture and Forestry

Sherbet is one of the most popular traditional beverages in Türkiye and it has existed since the early times of the Ottoman Empire. The production of sherbet consists of the dilution of mixed syrups made from various plants, flowers, fruits, roots, barks, or seeds. In this study, purple basil (Ocimum basilicum L.) sherbet was produced, and the physical changes, phenolic content, volatile profile and sensory properties were evaluated. Comparison of analytical results of fresh basil and sherbet samples showed that the colour values of fresh basil increased after sherbet production. The total polyphenol contents were 4.85 and 15.53 mg GAE …

Mechanistic Understanding Of Hormone Regulation Of Abiotic Stresses In Horticultural Plants: A Review, Faisal Hayat, Ummara Khan, Muhammad Zeeshan, Qurban Ali, Muhammad Azher Nawaz, Nazir Ahmed, Sezai̇ Erci̇şli̇, Karthishwaran Kandhan, Wasef Al-Zayadneh, Saad Sulieman, Mohamed S. Sheteiwy, Mohammed Alyafei

Turkish Journal of Agriculture and Forestry

Plants encounter considerable challenges due to environmental changes induced by anthropogenic activities or abrupt seasonal patterns. As sessile organisms, plants are continuously subjected to various abiotic stresses that adversely affect growth and productivity. Researchers have been studying for years to understand how plants develop resilience and respond to these environmental stressors. The application of phytohormones is widely recognized as a practical approach to mitigate the adverse effects of abiotic stresses on horticultural plants. Phytohormones play a crucial role in enhancing plant resilience by modulating key physiological functions such as seed germination, seedling growth, root formation, and photosynthetic efficiency. They also …

Physicochemical, Bioactive, Microbial, And Sensory Characteristics Of Homemade Vinegar Produced With A Local Apple Variety Using A Traditional Method, Hasan Kiliçgün, Fi̇li̇z Yangilar

Turkish Journal of Agriculture and Forestry

Apple is one of the most widely grown fruits in the world and can be found fresh in the market throughout the whole yeardue to its excellent storage ability. In addition to fresh consumption, apples are processed into a variety of products including fruitjuice, vinegar, jams, and pies. In this study, the bioactive contents and microbial, physicochemical, and sensory properties of sevenvinegars traditionally produced using a local apple variety, Kara Sakı, with different yeast materials (Saccharomyces cerevisiae, chickpea,buckwheat, barley, whey, natural home apple vinegar, and commercial apple cider vinegar) were assessed. The results indicated significantdifferences among vinegar samples for dry …

Grafting Success And Quality Of Hazelnut Plants: Impact Of Grafting Methods, Clones And Bonding Materials, Sava Džankić, Sandra Bijelić, Borivoje Bogdanović, Goran Jaćimović, Hülya Ünver

Turkish Journal of Agriculture and Forestry

Despite favourable agro-ecological conditions, there is a significant gap between the real demand for hazelnut fruits and the state of production in the Republic of Serbia. However, over the past few decades, hazelnut production has been significantly enhanced through establishing orchards with grafted seedlings. As hazelnut grafting has predominantly relied on the whip and tongue method until recently, there has been a need to explore other grafting methods of Corylus avellana L. on generative rootstocks of Corylus colurna L. The aim of this study was to comparatively investigate the grafting of three clones of C. avellana using four grafting methods, …

Sympathetic Innervation Of Interscapular Brown Adipose Tissue Is Not A Predominant Mediator Of Ot-Elicited Reductions Of Body Weight Gain And Adiposity In Male Diet-Induced Obese Rats, Edwards, Ha Nguyen, Andrew Dodson, Adam Herbertson, Mackenzie Honeycutt, Jared Slattery, June Rambousek, Edison Tsui, Tami Wolden-Hansen, Tomasz Wietecha, James Graham, Geronimo Tapia, Carl Sikkema, Kevin O'Brien, Thomas Mundinger, Elaine Peskind, Vitaly Ryu, Peter Havel, Arshad Khan, Gerald Taborsky, James Blevins

Departmental Papers (Biology)

Recent studies indicate that central administration of oxytocin (OT) reduces body weight (BW) in high fat diet-induced obese (DIO) rodents by reducing energy intake and increasing energy expenditure (EE). Previous studies in our lab have shown that  administration of OT into the fourth ventricle (4V; hindbrain) elicits weight loss and stimulates interscapular brown adipose tissue temperature (TIBAT) in DIO rats. We hypothesized that OT-elicited stimulation of sympathetic nervous system (SNS) activation of IBAT contributes to its ability to activate BAT and reduce BW in DIO rats. To test this, we determined the effect of disrupting SNS activation of IBAT on …

Comparing Metabolism And Hypoxia Tolerance Of Native And Non-Native Florida Freshwater Fishes In Climate Change Scenarios, Benjamin A. Share

All HCAS Student Capstones, Theses, and Dissertations

As climate change brings rising water temperatures and lower dissolved oxygen (DO) concentrations to freshwater bodies, it has become increasingly important to understand how this will affect ecosystems with established non-native or invasive species. Fishes of the family Cichlidae are the most pervasive non-native fishes in the Everglades and may increase their range further north under a changing climate. To better understand potential invasibility and competition with native fishes, the metabolism and hypoxia tolerance of non-native Blue Tilapia Oreochromis aureus was compared to native Bluegill Lepomis macrochirus when acclimated across a range of seasonal and projected temperatures. Intermittent-flow respirometry was …

Oregon State Rank Assessment For Wolverine (Gulo Gulo), Misty Nelson, Eleanor P. Gaines

Institute for Natural Resources Publications

Oregon state conservation status assessment for wolverine (Gulo gulo) using NatureServe methodology, 2024.

Influence Of Nitrate Levels On Plant Growth And Carbon And Nitrogen Metabolismin Cucumber (Cucumis Sativus L.) Under Low Light Stress, Syed Aizaz Ali Shah, Yuzi Shi, Jing Nie, Xuehui Yao, Yicong Guo, Muhammad Ahmad, Syed Atizaz Ali Shah, Faisal Hayat, Yasmin Niamat, Hali̇l İbrahim Öztürk, Xiaolei Sui

Turkish Journal of Agriculture and Forestry

Photosynthesis is critically dependent on both adequate light and nitrogen availability. In controlled agricultural environmentswith limited natural light, cucumber faces substantial challenges, including reduced photosynthetic efficiency and biomass accumulation.Nitrogen (N) is a vital component for the synthesis of various macromolecules, metabolites, and signaling molecules in plants. This studyassessed the impact of different nitrate levels (LL-N, LL-1/2N, and LL-2N) on the physiological, biochemical, and metabolic responsesof cucumber under low light conditions (80–100 μmol m–2 s–1 photosynthetic photon flux density) in comparison to standard light(400–500 μmol m–2 s–1 photosynthetic photon flux density) and unchanged nitrate. We observed that increasing nitrate levels to …

Different Irrigation Strategies Affect Proximate Composition And Fatty Acid Profiles Of Grape Seeds Under Semi-Arid Conditions, Mehmet İlhan Odabaşioğlu

Turkish Journal of Agriculture and Forestry

Grapevine (Vitis vinifera) is one of the most widely cultivated horticultural plants with high socioeconomic value, and itis extensively appreciated for its colorful berries and the wines made from its berries. Variations in the phytochemical compoundsof different tissues of grape berries under different cultural practices have been explored in numerous studies in recent years. In thisstudy, variations in the physical, proximate, and fatty acid compositions of grape (Vitis vinifera L. ‘Red Globe’) seeds under differentpartial root-zone drying and deficit irrigation treatments were investigated. The results showed that different irrigation treatments andirrigation levels affected the vitality, moisture, and oil contents of …

Control Of Mango Anthracnose (Colletotrichum Gloeosporioides) By Essential Oil Mixture, Chau Trung Duong, Huynh Thi Phuong Thao, Doan Minh Khang, Nguyen Thi Nhu Y, Tran Chi Nhan, Bui Thi Cam Huong, Nguyen Trong Tuan, Nguyen Thi Ngoc Truc, Dương Minh Tuệ, Luu Thai Danh

Turkish Journal of Agriculture and Forestry

Mixing two or more essential oils (EOs) may increase effectiveness of mango anthracnose control. In this study, EOs from a wide range of plant materials were hydro-distilled and chemically characterized. EOs were tested against in vitro growth of Colletotrichum gloeosporioides. EOs with the highest antifungal toxicity were selected for the interactive experiments. The results showed that orange had the highest extraction yield (4.94%), followed by lemon, pomelo, citronella, turmeric, ginger, lemongrass (LG), cinnamon bark (CB), cinnamon leaf (CL) and basil. Trans-cinnamaldehyde was the most abundant compound of CB (91.3%) and CL (94.1%) EO. Limonene was principle constituent of orange (97%), …

Combined Physiological And Biochemical Analysis And Molecular Biotechnology For Atrazine Residue Reduction In Soybeans, Fenglan Hu, Yan Ding

Turkish Journal of Agriculture and Forestry

To address the problem of atrazine residue in soybeans affecting the ecological environment and human health, in the presentstudy it is proposed to combine the bioorganic fertilizer DNBF10 and the highly efficient degrading bacterial strain AT-b3 with themagnetic biochar carrier MBC to form a novel DMBC-P bioremediation technology. The results indicated that the DMBC-P technologycould effectively reduce the residual amount of atrazine in soybeans and significantly enhance their growth and physiological indexes bypromoting atrazine degradation and phosphorus utilization and reducing oxidative stress. At the physiological and biochemical levels,DNBF10 significantly alleviated atrazine-induced oxidative stress, reducing the IBRv2 values to 1.84 and …

Bioethanol Yield Of The Sorghum × Sudangrass Hybrid Under Arid And Semiaridconditions: Nitrogen Dose Effects, Orthogonal Comparisons, And Component Analyses, Hali̇t Tutar

Turkish Journal of Agriculture and Forestry

The sorghum x sudangrass hybrid is highly significant as a biofuel crop due to its high biomass production, drought tolerance, ability to adapt to various climatic conditions, and high sugar content in its stems. This research aimed to determine the effects of six different nitrogen dose treatments on ethanol yield, yield parameters, and fertilizer use relationships in sorghum x sudangrass hybrid plants at two locations in 2021 and 2022. The experiment was established according to the randomized block design with three replicates. Nitrogen treatments were applied as N0 (0 kg da-1), N5 (5 kg da-1), N10 (10 kg da-1), N15 …

Oregon State Rank Assessment For Camas Pocket Gopher (Thomomys Bulbivorus), Eleanor P. Gaines

Institute for Natural Resources Publications

Oregon state conservation status assessment for Camas pocket gopher (Thomomys bulbiforus) using NatureServe methodology, 2024.

Teaching Matters In Formula Preparation-A Measure Of Equity And Nutritional Safety, Matthew D. Di Guglielmo

Department of Pediatrics Faculty Papers

No abstract provided.