Life Sciences Commons^™

Editorial - Sure Journal Vol 6, Anne M. Friel, Eva Campion, Sinead Loughran

SURE Journal: Science Undergraduate Research Experience Journal

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Design And Evaluation Of A Novel Binder Protein For Sars-Cov-2 Using The Online Game Foldit, Searre H. Abebe

The Journal of Purdue Undergraduate Research

No abstract provided.

Quantifying The Acre Wetland Water Balance, Ryland Barton

The Journal of Purdue Undergraduate Research

No abstract provided.

Identification Of Conserved Eukaryotic Gene Products In Novel Mycobacteriophage, Brandon Mar, Jade Coxon, Lily Esterline, Sydney Clifford, Gabriella Burke, Mallory Motz, Alaina Gartner, Kioni Bush, James Lin, Lizzie Adams, Sophia Palant

The Journal of Purdue Undergraduate Research

Bacteriophage, a type of virus that infects bacteria, was discovered 100 years ago, initially isolated with a plaque assay in the 1940s. A mycobacteriophage is a subtype of bacteriophage that specifically infects mycobacteria. Since the introduction of DNA technologies and efforts to identify a plethora of bacteriophages, over 10,000 bacteriophages have been identified with 1,500 sequenced. Bacteriophage discovery has aided in genetic editing techniques, the development of synthetic biology tools, and disease treatment. However, to be able to expand on these capabilities, there is a need to identify more bacteriophages and sequence the genomes of these viruses, as they outnumber …

Technological Accessibility For Wildlife Telemetry Research, Andrew Danielson

The Journal of Purdue Undergraduate Research

Over the course of two years, I conducted original research into improving accessibility for researchers in the field of wildlife telemetry. Wildlife telemetry is a technique used by biologists to track wildlife in the field, which requires the biologist to attach a small radio transmitter to an animal, usually using a specially designed collar, harness, or another means. These transmitters are battery powered and will emit or transmit a regularly timed radio signal that can be received by radio receivers carried by the researchers. Two issues faced by wildlife telemetry researchers are the cost of wildlife telemetry equipment and the …

Preliminary Checklist Of Amphipod Crustaceans From Sapelo Island, Ga, Abigail Dugger*, Kristine N. White Ph.D.

Georgia Journal of Science

Amphipods belonging to the subphylum Crustacea inhabit many aquatic habitats, and they can often inform scientists and researchers about various environmental conditions, acting as biological indicators, yet documentation of amphipod species is lacking in the state of Georgia. During this study amphipods were collected from around Sapelo Island, GA, imaged, and identified. A preliminary checklist and identification key to Sapelo Island amphipods is provided. This checklist and key will be useful for researchers and citizen scientists alike, for monitoring the health of the environment, surveying biodiversity, and for use in other applied studies.

Scorpions Of The Horn Of Africa (Arachnida: Scorpiones). Part Xxxiv. Four New Species Of Neobuthus From Somaliland (Buthidae), František Kovařík, Hassan Sh A. Elmi, František Šťáhlavský

Euscorpius

New information about taxonomy and distribution of the genus Neobuthus Hirst, 1911 is presented, based on material recently collected in Somaliland. Four new species are described, N. dhobo sp. n., N. opatovae sp. n., N. osoli sp. n., and N. verae sp. n. (Somaliland). An updated distribution map of the genus Neobuthus is provided.

Making A Personal Connection Brings Back The Magic, Don Sessions

Turning Toward Being: The Journal of Ontological Inquiry in Education

In this age of technology with its concerns for efficiency and resources the practice of medicine and the relationship between doctors and patients is under assault. Using the doctor-patient relationship as a model to address this concern the author claims that making a personal connection between doctors and patients at the level of their shared humanity produces synchronous beneficial results. Further, this personal connection can facilitate magic, an experience where a specialized type of language and listening allow for unpredictable and unexpected results.

Profitable Improvement In Rangeland Conditions: Cunyu Station’S Achievement Of Synonymous Objectives In The Highly Variable Southern Rangelands Of Western Australia, Bradley Plunkett, Christophe D'Abbadie

Natural resources research reports

This case examines the objectives and management practices of Cunyu Station in Western Australia from 1990–2017. The owners’ objectives were to apply best practice knowledge augmented with localized management skills to rigorously adjust total grazing pressure (TGP) from all species (cattle, kangaroos, camels, horses, and donkeys) to levels commensurate with improved landscape conditions, minimized operating costs, and stable cash flows. A combination of infrastructure investment, feral herbivore control, use of the native apex predator (dingo) for kangaroo control, creation, and maintenance of around 18 months of ‘buffer’ pasture, and finishing 30-month-old steers on the Station were key management practices for …

Models Of Classroom Assessment For Course-Based Research Experiences, Howard Hughes Medical Institute

School of Biological Sciences: Faculty Publications

Course-based research pedagogy involves positioning students as contributors to authentic research projects as part of an engaging educational experience that promotes their learning and persistence in science. To develop a model for assessing and grading students engaged in this type of learning experience, the assessment aims and practices of a community of experienced course-based research instructors were collected and analyzed. This approach defines four aims of course-based research assessment – 1) Assessing Laboratory Work and Scientific Thinking; 2) Evaluating Mastery of Concepts, Quantitative Thinking and Skills; 3) Appraising Forms of Scientific Communication; and 4) Metacognition of Learning – along with …

Next Generation Sequencing Based Profiling Of Genes In Patients With Syndromic Forms Of Retinitis Pigmentosa, Harshavardhini G

Theses and Dissertations

India is one of the largest populations in the world and is estimated to have a high prevalence of Retinitis Pigmentosa (RP). RP is clinically and genetically heterogenous, characterized initially as night blindness, leading to complete vision loss due to retinal degeneration. RP can occur in non-syndromic or syndromic forms, affecting other organs as observed in Bardet Biedl Syndrome (BBS) and Usher syndrome (USH).

BBS is characterized by RP, polydactyly, obesity, renal anomalies and learning difficulties. USH is characterized by RP and sensorineural hearing loss (SNHL), with variable presence of vestibular dysfunction. Nextgeneration sequencing (NGS) has become a cost-effective technology …

Colored Sweet Bell And Tapered Pepper Cultivar Evaluation For High Tunnel Production In West-Central Indiana, 2024, Petrus Langenhoven, Lizeth Sofia Catucuamba Tuquerrez

Midwest Vegetable Trial Reports

Currently, comprehensive pepper variety performance data specific to Indiana has been limited. Recognizing this gap, we have initiated a systematic evaluation process. To date, we have conducted thorough assessments of 35 different pepper varieties, with each variety being carefully studied through two distinct production cycles. This research paper presents findings from five sweet bell pepper varieties and five tapered pepper varieties, which were grown and evaluated at the Purdue Student Farm in West Lafayette, Indiana.

Pediatric Flecainide Pharmacogenomics: A Roadmap To Delivering Precision-Based Care To Pediatrics Arrhythmias., Ronald Palmen, Mollie Walton, Jonathan B. Wagner

Manuscripts, Articles, Book Chapters and Other Papers

Flecainide acetate is a Class 1c anti-arrhythmic with a potent sodium voltage gated channel blockade which is utilized for the second-line treatment of tachyarrhythmias in children and adults. Given its narrow therapeutic index, the individualization of drug therapy is of utmost importance for clinicians. Despite efforts to improve anti-arrhythmic drug therapy, there remain knowledge gaps regarding the impact of variation in the genes relevant to flecainide's disposition and response. This variability is compounded in developing children whose drug disposition and response pathways may remain immature. The purpose of this comprehensive review is to outline flecainide's disposition and response pathways while …

Improving Health And Well-Being Through Shared Family Meals, Halle Larson, Savannah Daines, Stacy Bevan, Palak Gupta, Mateja R. Savoie-Roskos

All Current Publications

Shared family meals provide numerous benefits for children, adolescents, and parents, including improved diet quality, healthier weight, better academic performance, stronger family bonds, and enhanced mental health. Regular family meals help children develop healthier eating habits, reduce risky behaviors, and foster communication skills. Despite challenges such as busy schedules and differing dietary preferences, families can overcome obstacles by starting small, keeping meals simple, involving everyone in meal prep, and minimizing distractions like screens. Creating a positive, flexible mealtime routine can help integrate these valuable moments into family life.

Enhanced Glucose Production In Norepinephrine And Palmitate Stimulated Hepatocytes Following Endurance Training, Ken D. Sumida, Vera M. Lordan, Casey M. Donovan

Health Sciences and Kinesiology Faculty Articles

Enhanced hepatic gluconeogenesis plays an important role in exercise glucose homeostasis when hepatic glycogen stores are depleted. Livers from trained animals demonstrate greater rates of gluconeogenesis in the presence of elevated substrate with and without hormonal stimulation. Training has been reported to have a particularly profound impact on norepinephrine-stimulated gluconeogenesis, but this was only demonstrated in the presence of other gluconeogenic hormones. Here we reexamine the impact of endurance training on norepinephrine-stimulated gluconeogenesis in the absence of any other hormones. Isolated hepatocytes from trained and untrained rats were incubated in 6 mM lactate with various concentrations of norepinephrine (0 nM–20 …

Detecting Multiple Paternity In Mule Deer Using Kinship Values, Madeline K. Martin, Brock Mcmillan, Paul Frandsen, Sydney Lamb, Randy Larsen

Undergraduate Honors Theses

Multiple paternity is an ecological phenomenon that plays an important role in reproductive dynamics and population genetics; the presence and rate of multiple paternity can shed light on reproductive behavior and the potential genetic effects of human management. Previous methods have estimated multiple paternity using genetic markers such as microsatellites, and require DNA from both parents and their offspring. However, evolving genomic technology promotes use of alternative genomic methods and acquiring paternal DNA from free-ranging animals is often difficult or impossible. We propose kinship values derived from single-nucleotide polymorphisms (SNPs) as a tool to predict multiple paternity. Calculating kinship values …

Blinatumomab Maintenance After Allogeneic Hematopoietic Cell Transplantation For B-Lineage Acute Lymphoblastic Leukemia, Yuanxin Wang, Merve Dede, Vakul Mohanty, Jinzhuang Dou, Ziyi Li, Ken Chen

Faculty, Staff and Student Publications

Decoding cellular state transitions is crucial for understanding complex biological processes in development and disease. While recent advancements in single-cell RNA sequencing (scRNA-seq) offer insights into cellular trajectories, existing tools primarily study expressional rather than regulatory state shifts. We present CellTran, a statistical approach utilizing paired-gene expression correlations to detect transition cells from scRNA-seq data without explicitly resolving gene regulatory networks. Applying our approach to various contexts, including tissue regeneration, embryonic development, preinvasive lesions, and humoral responses post-vaccination, reveals transition cells and their distinct gene expression profiles. Our study sheds light on the underlying molecular mechanisms driving cellular state transitions, …

Detection Of Kmt2a Partial Tandem Duplication By Optical Genome Mapping In Myeloid Neoplasms: Associated Cytogenetics, Gene Mutations, Treatment Responses, And Patient Outcomes, Qing Wei, Shimin Hu, Jie Xu, Sanam Loghavi, Naval Daver, Gokce A Toruner, Wei Wang, L Jeffrey Medeiros, Guilin Tang

Faculty, Staff and Student Publications

KMT2A partial tandem duplication (PTD) involves intragenic KMT2A duplications and has been associated with poorer prognosis. In this study, we evaluated KMT2A PTD in 1277 patients with hematological malignancies using optical genome mapping (OGM). KMT2A PTD was detected in 35 patients with acute myeloid leukemia (AML) (7%), 5 patients with myelodysplastic syndrome (MDS) (2.2%), and 5 patients with chronic myelomonocytic leukemia (CMML) (7.1%). The PTDs varied in size, region, and copy number. An Archer RNA fusion assay confirmed KMT2A PTD in all 25 patients tested: 15 spanning exons 2 to 8 and 10 spanning exons 2 to 10. Most patients …

A Statistical Approach For Systematic Identification Of Transition Cells From Scrna-Seq Data, Yuanxin Wang, Merve Dede, Vakul Mohanty, Jinzhuang Dou, Ziyi Li, Ken Chen

Faculty, Staff and Student Publications

Decoding cellular state transitions is crucial for understanding complex biological processes in development and disease. While recent advancements in single-cell RNA sequencing (scRNA-seq) offer insights into cellular trajectories, existing tools primarily study expressional rather than regulatory state shifts. We present CellTran, a statistical approach utilizing paired-gene expression correlations to detect transition cells from scRNA-seq data without explicitly resolving gene regulatory networks. Applying our approach to various contexts, including tissue regeneration, embryonic development, preinvasive lesions, and humoral responses post-vaccination, reveals transition cells and their distinct gene expression profiles. Our study sheds light on the underlying molecular mechanisms driving cellular state transitions, …

Phosphorus Buffering Determines How Soil Properties And Rainfall Influence Wheat (Triticum Aestivum) Yield Response To Phosphorus Fertiliser, Craig Scanlan, Raj Malik, Gustavo Boitt, Mark Gherardi, James Easton, Zed Rengel

Grain and Other Field Crops Research Articles

Context

Current decision support systems (DSS) for phosphorus (P) fertiliser were developed using data from historical cropping systems. An understanding of how soil properties and rainfall influence wheat (Triticum aestivum) response to P fertiliser in current systems is required to optimise P management. Aims

The aims of this study were to: (1) assess the soil properties that have the greatest influence on relative yield; (2) examine how rainfall conditions influence relative yield; and (3) examine whether there were interactive effects between rainfall and soil properties on relative yield. Methods

Forty P rate-response field experiments were completed in Western …

Coastal Marine Heatwaves In The Santa Barbara Channel: Decadal Trends And Ecological Implications, Kit Yu Karen Chan, L. Kui, A. M. Mcdonald, A. L. Ritger, G. E. Hofmann

Biology Faculty Works

Marine heatwaves (MHWs) are of increasing concern due to the emerging ecological and socioeconomic impacts on coastal ecosystems. Leveraging the data of the Santa Barbara Coastal Long-Term Ecological Research project, we analyzed the MHW event metrics observed in the kelp forest ecosystem and across Santa Barbara Channel, CA, USA. Not only was there a significant positive trend in the number of MHWs recorded, their duration and intensity were also increasing over time. MHWs were detected year-round, suggesting that marine organisms have exposure risks regardless of their phenology. Exposure at one life history stage could have a legacy effect on the …

Investigating Tumor Growth And Regulation In Supratentorial Ependymomas; The Impact Of Dlk1 And Egr1 Knockout, Om Sinojia

Honors Scholar Theses

Ependymomas (EPNs) are primary brain tumors that often arise from radial glial cells lining the ventricular system. Supratentorial ependymomas (ST-EPNs) are particularly aggressive, and understanding the molecular factors driving their growth is critical for developing targeted therapies. This study investigates the roles of DLK1 and EGR1, key regulators in cellular differentiation and tumorigenesis, in the development of ST-EPNs. We utilized genetically engineered mouse models to induce postnatal knockouts of DLK1 and EGR1 and evaluated tumor growth using histological and imaging techniques. Tumor area was quantified across multiple brain sections from both male and female mice. DLK1 knockout brains exhibited consistent …

Zeolite 13x Particles With Porous Tio2 Coating And Ag2o Nanoparticles As Multi-Functional Filler Materials For Face Masks, Wei Su, Kaiying Wang, Han Yu, Fateme Fayyazbakhsh, Jeremy Watts, Yue-Wern Huang, Jee-Ching Wang, Xinhua Liang

Geosciences and Geological and Petroleum Engineering Faculty Research & Creative Works

Adsorbent components in face masks are crucial for protecting individuals exposed to dangerous situations. In this study, one porous TiO₂ layer was deposited on zeolite 13X particles by coating hybrid organic/inorganic titanium alkoxide film via molecular layer deposition (MLD), followed by heat treatment to remove organic components in the MLD film. Various concentrations of Ag₂O nanoparticles were impregnated on the TiO₂-coated 13X particles, offering a wide range of antibacterial, antifungal, and antiviral characteristics. The obtained composite particles were characterized using X-ray photoelectron spectroscopy and thermal gravimetric analysis to study the composition and mass loading of …

Testing Vivo-Morpholino Mediated Gene Knockdown Of Stat6, Spi1b, And Hnf4Α In Adult Threespine Stickleback, Stella Dipippo

Honors Scholar Theses

The fibrotic immune response to the cestode parasite, Schistocephalus solidus, varies among threespine stickleback populations. Fibrosis suppresses parasite growth but has costly effects on the fish. Previous genomic studies in stickleback have suggested potential roles of Spi1b, STAT6, and HNF4α in modulating fibrosis severity, but there is presently no evidence for this in-vivo. We used antisense vivo-morpholino oligonucleotides (MOs) to attempt to knockdown the expression of each gene in the liver, spleen, and intestine of adult stickleback. Vivo-MOs have been proven effective in other species of teleost fish, as well as in mice and humans, but …

The Role Of Nutrient Solutions On Phosphate-Solubilizing Bacteria Population, Phosphorus Availability, Phosphorus Uptake, Growth And Yield Of Red Chili (Capsicum Annuum L.), Betty Natalie Fitriatin, Raden Faqih Hilmiy Ghifari, Emma Trinurani Sofyan, Fitri Widiantini, Hanif Fakhrurroja, Tualar Simarmata

Jurnal Kultivasi

Red chili consumption in Indonesia has increased every year. However, with large chili production to meet large consumption, land conversion for various purposes has reduced the harvested area. The efforts to increase the harvested area of chili using Inceptisols soil by providing nutrient solutions to overcome the infertility of the soil using its nutrients. This experiment aims to determine the effect of nutrient solution application on the population of phosphate-solubilizing bacteria, phosphorus availability, phosphorus uptake, growth, and yield of Red Chili (Capsicum annuum L.) in Inceptisols. The experiment was conducted from August 2023 to February 2024 at Ciparanje Experimental Field, …

Impacts Of Gibberellin Application On Citrus: An Overview From Seed Germination To Fruit Quality Enhancement, Siti Auliya Rahma, Rahmat Budiarto, Syariful Mubarok, Supatida Abdullakasim

Jurnal Kultivasi

Gibberellins are key plant hormones, and their application in citrus plants is frequently reported. This review aims to provide an overview of the application of gibberellic acid (GA3) in citrus cultivation, emphasizing their effects on growth, flowering, fruit quality, and ripening. Citrus fruits often face challenges like irregular fruit set, size inconsistency, and environmental stress, impacting yield and profitability, with exogenous gibberellin application as a potential solution. Applying gibberellins can accelerate citrus seed germination and seedling growth, enhance vegetative growth, inhibit flowering, delay fruit ripening, and improve fruit quality. However, the efficacy of gibberellins varies across species and conditions, highlighting …

The American Cancer Society National Lung Cancer Roundtable Strategic Plan: Methods For Improving Turnaround Time Of Comprehensive Biomarker Testing In Non-Small Cell Lung Cancer, Sinchita Roy-Chowdhuri, Haresh Mani, Adam H Fox, Anne Tsao, Lynette M Sholl, Farhood Farjah, Bruce E Johnson, Raymond U Osarogiagbon, M Patricia Rivera, Gerard A Silvestri, Robert A Smith, Ignacio I Wistuba

Faculty, Staff and Student Publications

Comprehensive biomarker testing for patients with non-small cell lung cancer is critical for selecting appropriate targeted therapy or immunotherapy. Ensuring timely ordering, processing, and reporting is key to optimizing patient outcomes. However, various factors can prevent or delay patients from being offered the option of treatment selection based on comprehensive biomarker testing. These factors include problems with access to testing, tissue adequacy, turnaround time, and health insurance coverage and billing practices. Turnaround time depends on several logistical and tissue handling factors, which involve institutional policies, processes, resources, testing methodology, and testing algorithms that vary across different practices. In this article, …

Farmers’ Decision Processes About Biocontrol Innovation Adoption: Dynamics Surrounding Push-Pull Technology In Western Kenya, Olufemi Samson Adesina, Stephen Whitfield, Susannah M. Sallu, Steven M. Sait, Jimmy Pittchar

All Peer-Reviewed Publications

Smallholder farmers in sub-Saharan Africa (SSA) face increasing challenges from pests and climate change, among other issues. In response to these challenges, international agricultural research for development (R4D) investment is often focused on developing and scaling up techniques and technologies that bolster resilience. However, such approaches are often technocentric and follow linear assumptions of innovation diffusion and adoption, which overlook the complex realities that influence smallholder farmers’ dynamic decisions and engagement with novel techniques. This study used qualitative ethnographic methods to explore the experiences, knowledge construction, motivations, and decision-making of farmers in Western Kenya regarding the extensively researched push-pull technology …

An Overview Of Gibberellin Inhibitors For Regulating Vegetable Growth And Development, Erik Setiawan, Rahmat Budiarto, Jajang Sauman Hamdani, Mansour Ghorbanpour

Jurnal Kultivasi

Gibberellin (GAs) promotes plant growth processes like germination, shoot elongation, root development, and flowering, while its inhibition is occasionally used in some vegetable crop practices. This paper aims to review the current literature on GAs inhibitors in practical vegetable crops and suggest future strategies for increasing yield. In some vegetable crops, inhibiting GAs with natural (abscisic acid, ethylene) or synthetic (paclobutrazol, prohexadione-Ca) regulators is key to improving yield and quality. Abscisic acid (ABA) counteracts GAs in germination and stress adaptation, while ethylene (ET) opposes GAs in senescence and growth inhibition. The application of paclobutrazol (PBZ) and prohexadione-Ca (Pro-Ca) is known …

Greening Of A Boreal Rich Fen Driven By Co2 Fertilisation, Sandeep Thayamkottu, T. Luke Smallman, Jaan Pärn, Ülo Mander, Eugénie S. Euskirchen, Evan Kane

Michigan Tech Publications

Boreal peatlands store vast amounts of soil organic carbon (C) owing to the imbalance between productivity and decay rates. In the recent decades, this carbon stock has been exposed to a warming climate. During the past decade alone, the Arctic has warmed by ∼ 0.75°C which is almost twice the rate of the global average. Although, a wide range of studies have assessed peatlands’ C cycling, our understanding of the factors governing source / sink dynamics of peatland C stock under a warming climate remains a critical uncertainty at site, regional, and global scales. Here our focus was on answering …