Life Sciences Commons^™

Evaluating The Role Of Glucocorticoids On The Host Response To Helicobacter Pylori Infection, Sara Druffner

Graduate Theses, Dissertations, and Problem Reports (ETD)

Gastric cancer is the fifth most common cancer and the fifth leading cause of cancer deaths worldwide. Helicobacter pylori infection is the number one risk factor for gastric cancer development. Roughly 50% of the world’s population is infected with H. pylori, though only 1-3% of those infected will develop cancer. H. pylori drives chronic inflammation that creates the requisite environment for carcinogenesis, yet it remains unclear why some individuals develop cancer and others do not. Most mechanistic studies are done in mice, however H. pylori is not a natural mouse pathogen. Research is typically done either with mouse-adapted strains of …

Time-Efficient Filtering Of Imaging Polarimetric Data By Checking Physical Realizability Of Experimental Mueller Matrices, Tatiana Novikova, Alexey Ovchinnikov, Gleb Pogudin, Jessica C. Ramella-Roman

Publications and Research

Motivation: Imaging Mueller polarimetry has already proved its potential for biomedicine, remote sensing, and metrology. The real-time applications of this modality require both video rate image acquisition and fast data post-processing algorithms. First, one must check the physical realizability of the experimental Mueller matrices in order to filter out non-physical data, i.e. to test the positive semi-definiteness of the 4 × 4 Hermitian coherency matrix calculated from the elements of corresponding Mueller matrix pixel-wise. For this purpose, we compared the execution time for the calculations of (i) eigenvalues, (ii) Cholesky decomposition, (iii) Sylvester’s criterion, and (iv) coefficients of the characteristic …

Important Factors Contributing To The Burn Severity Of The 2021 Wooroloo Bushfire, Jarrad Mckercher, Eddie Van Etten, David Blake

Research Datasets

Increases in consecutive days that meteorological, climatic and biophysical variables combine to influence fire is projecting an increase in fire size and intensity. This prompts investigation into the severity of recent fires to gain a better understanding of the factors that influence fire severity. Using a highly accurate spectral index, a geospatial analysis was undertaken to identify key variables that control the variability in fire severity of the 2021 Wooroloo Bushfire. Random Forest regression and General Additive Model (GAM) were utilised to determine variable importance in modelling fire severity and to create parsimonious models. Elevation and the Soil Dryness Index …

Marine Heatwaves And Impacts On Marine Ecosystems, Anna Lafratta, Hollie Williams, Stanley Mastrantonis, Sharyn Hickey, Kathryn Mcmahon, Arani Chandrapavan, Andi Laidlaw, Emily Lester

Research Datasets

The metadata is a compilation of existing long-term datasets available across Western Australia coastline. This was prepared as an initial step in identifying what is known about the Western Australia marine ecosystem and to explore the responses to marine heatwaves and for future planning. For each dataset a series of information are provided, including Institute that collected the data and contact details, period and frequency of data collection, Department of Primary Industries and Regional Development (DPIRD) bioregion, habitat and species studies, variables analysed and methods of data collection. Seventeen organizations contributed to these metadata records. The details of these datasets …

Investigation Of Campylobacter Concisus Gastric Epithelial Pathogenicity Using Ags Cells, Christopher Y. M. Luk, Seul A. Lee, Nicholas Naidovski, Fang Liu, Alfred C. Y. Tay, Liang Wang, Stephen Riordan, Li Zhang

Research outputs 2022 to 2026

Campylobacter concisus is an oral bacterium. Recent studies suggest that C. concisus may be involved in human gastric diseases. The mechanisms, however, by which C. concisus causes human gastric diseases have not been investigated. Here we examined the gastric epithelial pathogenicity of C. concisus using a cell culture model. Six C. concisus strains and the human gastric epithelial cell line AGS cells were used. IL-8 produced by AGS cells after incubation with C. concisus was measured using enzyme-linked immunosorbent assay (ELISA), and AGS cell apoptosis was determined by caspase 3/7 activities. The effects of C. concisus on actin arrangement in …

Ecu-Mss-2 Dataset, A New Multi-Species Seagrass, Md K. Noman, Syed M. S. Islam, Seyed M. Jalali, Jumana Abu-Khalaf, Paul Lavery

Research Datasets

The "ECU-MSS-2' dataset contains four different habitats, 'Amphibolis' spp (hereafter 'Amphibolis"), 'Halophila' spp (hereafter 'Halophila'), 'Posidonia' spp (hereafter 'Posidonia') and 'Background'. We compiled this image dataset from different sources. The 'Halophila' images were collected by the Centre for Marine Ecosystems Research, Edith Cowan University, Western Australia.

The 'Amphibolis' 'Background' and 'Posidonia' images were collected by the Department of Biodiversity, Conservation and Attractions (DBCA), Australia. The 'Amphibolis' class includes the seagrass species Amphibolis griffithii and Amphibolis Antarctica. The 'Halophila' class includes Halophila ovalis, while the 'Posidonia' class includes Posidonia sinuosa, Posidonia coriacea, and Posidonia Australis. The 'Background' class includes coral, sand, …

Better Understanding The Barred Owl, Adam Lee Potts

Graduate Student Theses, Dissertations, & Professional Papers

This thesis research presents an analysis of barred owl nest site selection in an understudied region of their expanded range. The barred owl has dramatically expanded its range westwards over the last 150 years, prompting multiple conflicting reinterpretations of their species account. Hypotheses of range expansion are reviewed to provide context for this study’s research. This study gathers empirical data on nest site selection in the mixed conifer forests of Montana’s Seeley-Swan and Mission Valleys. Eight barred owl nests were located following extensive territory surveys. Field measurements of tree height and diameter using USFS Forest Inventory and Analysis (FIA) plot …

Adjusting For Covariates Representing Potential Confounders, Mediators, Or Competing Predictors In The Presence Of Measurement Error: Dispelling A Potential Misapprehension And Insights For Optimal Study Design With Nutritional Epidemiology Examples, Roger S Zoh, Diana M Thomas, Carmen D Tekwe, Xiaoxin Yu, Colby J Vorland, Nikhil V Dhurandhar, David M Klurfeld, David B Allison

Children’s Nutrition Research Center Staff Publications

Background: Variables such as dietary intake are measured with error yet frequently used in observational epidemiology. Although this limitation is sometimes noted, these variables are still often modeled as covariates without formal correction or sincere dialogue about measurement unreliability potentially weakening the validity of statistical conclusions. Further, larger sample sizes increase power (bias) to detect spurious correlations. Counterintuitively, recent work suggested a non-monotonic relationship between confounder unreliability and how much controlling for the confounder reduces (or induces) bias when testing for an exposure-outcome association. If true, such non-monotonicity would be especially concerning for applications such as nutrition, where measurement reliability …

Catalyzing Communities Of Research Rigour Champions, Audrey C Brumback, William X Q Ngiam, Dana M Lapato, David B Allison, Christin L Daniels, Michael Dougherty, Haley F Hazlett, Kara L Kerr, Susan Pusek, Naomi Schrag

Children’s Nutrition Research Center Staff Publications

The biomedical sciences must maintain and enhance a research culture that prioritizes rigour and transparency. The US National Institute of Neurological Disorders and Stroke convened a workshop entitled 'Catalyzing Communities of Research Rigor Champions' that brought together a diverse group of leaders in promoting research rigour and transparency (identified as 'rigour champions') to discuss strategies, barriers and resources for catalyzing technical, cultural and educational changes in the biomedical sciences. This article summarizes 2 days of panels and discussions and provides an overview of critical barriers to research rigour, perspectives behind reform initiatives and considerations for stakeholders across science. Additionally, we …

Evaluation Of A Novel Corn Fermented Protein Ingredient, Probiotics, And Postbiotics On Nursery Pig Growth Performance And Gut Health, Juan F. Castillo Zuniga

Electronic Theses and Dissertations

Weaning is a necessary step in pig production. After weaning, pigs are subjected to various nutritional, psychological, and environmental stresses. The weaning period is an important period for the intestinal development of the pig. During this time, digestion, immunity, metabolism, and various other aspects of the pig change rapidly. Therefore, providing high-quality feed ingredients is crucial to encourage the newly weaned pig to start consuming solid feed. Two independent studies were conducted to determine if the inclusion of: 1) corn fermented protein (CFP) or 2) probiotics or postbiotics impact nursery pigs' growth performance and gut health. The first experiment utilized …

The Relationship Between Soil Test Phosphorus And Soil Biology - A Natural Management Of Soil Phosphorus Through Conservation Practices, Clarence Frederick Winter

Electronic Theses and Dissertations

Phosphorus (P) management is an ongoing challenge in modern agriculture. Due to the importance of P in agriculture, P fertilizer additions are made throughout the U.S. to avoid nutrient-depleted soil. However, the application of P is problematic, as an excess of P in an agricultural system elevates the risk of environmental degradation, and current synthetic P sources are a fleeting resource. Additionally, a majority of P found in agricultural soils are insoluble, in the form of secondary and primary P minerals, making this large pool of P unavailable to plants. Fortunately, soil fungi organisms, such as arbuscular mycorrhizal fungi (AMF) …

Identification And Characterization Of Three Novel Rumen Bacterial Species In Sheep Fed A Concentrate Diet, Reid Frederick Anema

Electronic Theses and Dissertations

Sheep production in the United States is a popular venture for both small farmers and large enterprise owners, as there is a market for end products such as wool and meat. One major factor of raising sheep is nutrition as an adequate diet will allow an animal to reach its full genetic potential for growth. With that in mind, the composition of the diet must be formulated to benefit the animal. Ruminants have the ability to use a variety of plants that are often inedible for humans to create products that humans can consume. These varying feedstuffs, whether they include …

Ecophysiology Of Bradyrhizobium Diazoefficiens Usda 110, Armaan Kaur Sandhu

Electronic Theses and Dissertations

With increasing demand for soybean, maximizing plant yield is important yiel is dependent on nitrogen availability, but nitrogen fertilizers can meet the plant's needs but have severe environmental impacts. An economically and environmentally sustainable approach is to enhance nitrogen availability through Biological Nitrogen Fixation by symbiotic rhizobia, Bradyrhizobium, an efficient nitrogen fixer for soybean. This symbiosis begins with attachment of rhizobia to legume roots. Root and rhizobia surface properties play a significant role in this attachment. Another major factor affecting root colonization is bacterial competition ability. There is a lack of knowledge on the role of bacterial surface properties, competition …

Development And Characterization Of Transparent Soil Using Biodegradable Polysaccharides, Said Badshah

Electronic Theses and Dissertations

No abstract provided.

Using The Microbiome To Assess The Health Status Of The Individuals Recovered From The East Marshall Street Well, Arian Karim

Master of Science in Forensic Science Directed Research Projects

In 1994, during the construction of the Kontos Building on the Medical College of Virginia Campus, a well on East Marshall Street was discovered to contain artifacts and human remains of African descent. Upon archaeological analysis by the Smithsonian, the ancestral remains can be dated back to the mid-19th century, when grave robbing and the use of cadavers for anatomical purposes [BS1] in medical schools were common. The human oral microbiome is the second largest human microbiota, containing over 600 species of organisms. Dysbiosis of the oral microbiome can lead to the overgrowth of pathogenic species, resulting in illness and …

Abundance And Habitat Associations Of Bivalves In Mosquito Lagoon, A Preliminary Survey, Mariam Sonbol

Honors Undergraduate Theses

This study investigates the understudied abundance and habitat associations of bivalves in Mosquito Lagoon. Seagrass habitats were found to support the highest diversity of mollusks in earlier surveys (Mikkelsen et al., 1995). Twelve sites, including seagrass-vegetated, unvegetated, and seagrass-restored areas, were sampled in March and May 2024. Habitat characteristics, such as sediment composition and seagrass cover, were analyzed alongside bivalve populations. Across all sites, 6 genera were identified among 44 individuals. Overall abundance and diversity of bivalves collected were low in all sites, and most individuals were juveniles. Sediment characteristics influenced differences in diversity across site types, with restored sites …

Epitope Mapping Novel Monoclonal Antibodies Against Borrelia Burgdorferi Surface Proteins Ospc And Bmpa, Eliza M. Doyle

Honors Undergraduate Theses

In response to the progressive nature of Lyme disease, direct diagnostic testing of Borrelia burgdorferi surface proteins was proposed as a quicker and more sensitive alternative to the current indirect detection methods. To determine the ability of novel monoclonal antibodies to detect the surface lipoproteins BmpA and OspC, recombinant fragments of these proteins were created. These fragments were tested against the putative diagnostic antibodies via western blotting as a means to map the epitope of each of the proteins that the respective antibodies recognize. All BmpA fragments with deletions on the N-terminal end exhibited reactivity, indicating that the epitope is …

The Effect Of Intermittent Fasting, Caloric Restriction And Exercise On Aging And Longevity: Systematic Review, Romi Hardin

Honors Undergraduate Theses

The purpose of this study was to gain a better understanding of the effects of caloric restriction, intermittent fasting, and exercise on human longevity and aging, and explore their practical applications and inclusions into a healthy lifestyle. By reviewing the existing research and studies, this literature review focuses on identifying and explaining the biological mechanism behind these practices and exploring whether combining practices can be advantageous in extending not only lifespan but health span. The results generally indicate that following either caloric restriction or intermittent fasting and participating in regular exercise have immense results on promoting healthy aging in an …

Co-Occurrence Of Autism Spectrum Disorder And Attention-Deficit/Hyperactivity Disorder With Idiopathic Hypersomnia: Data From The Hypersomnia Foundation Registry, Sophie Sevan Mikkelsen

Honors Undergraduate Theses

In recent years, hypersomnia patients and researchers alike have increasingly discussed the possibility of heightened comorbidities, or co-occurrences, of autism spectrum disorder (ASD) and attention-deficit/hyperactivity disorder (ADHD) with the central disorders of hypersomnolence: idiopathic hypersomnia (IH) and narcolepsy (N). While a few scarce studies have investigated a link between ADHD and N, there has been no research on the co-occurrence of these conditions with IH. This study, using data from the Hypersomnia Foundation’s CoRDS Patient Registry, is the first to identify self-reported rates of ASD and ADHD diagnoses by people with idiopathic hypersomnia. Four chi-square tests were conducted to determine …

How Hormonal Contraceptives Influence Injury In Female Athletes: A Systematic Review, Ashley V. Malvita

Honors Undergraduate Theses

Research indicates that female athletes have a higher risk of musculoskeletal injuries. Hormone fluctuations throughout the different periods of the menstruation cycle impacts the risk of injuries for women. Contraceptive use, most used in the form of an oral contraceptive pill, directly effects hormones and menstrual cycle related symptoms, with evidence of ameliorating some symptoms. Oral contraceptive use is suggested to influence musculoskeletal injuries in female athletes. However, there is little research and data that explores the direct relationship between oral contraceptive use and the injury rates of female athletes. Within this systematic review, five articles investigating this relationship fulfilled …

The Invasive Species We Love And The Ones We Don't, S. Nicole Frey

Human–Wildlife Interactions

This is the letter from the editor-in-chief of Volume 18, Issue 1.

An Effective Method For Long-Term Control Of American Bullfrogs Syntopic With Special-Status Native Amphibians In California, Usa, Jeff A. Alvarez, Jeffery T. Wilcox

Human–Wildlife Interactions

American bullfrogs (Lithobates catesbeianus) are invasive in western North America and are well established in California, USA, where they are widespread. This invasive species has been implicated in the decrease of native amphibian populations and is believed to have contributed to the decline of threatened and endangered amphibians regionally. We utilized air rifles, tin alloy pellets, and 2 shooters to systematically control L. catesbeianus in both lentic and lotic habitat types within 2 counties in California. We visited sites monthly (April through November) for approximately 8 and 14 years to lethally target and remove L. catesbeianus …

Quantifying Wild Pig Disturbance In Pastures And Wetlands Using Unmanned Aerial Vehicle-Derived Imagery, Wesley M. Anderson, Bethany Wight, Raoul K. Boughton

Human–Wildlife Interactions

The use of unmanned aerial vehicles (UAVs) for agricultural and environmental research has increased markedly in recent years, and a key application has been to conduct damage assessments. Invasive wild pigs (Sus scrofa) cause both agricultural and environmental damage, and past studies have utilized UAVs to quantify this damage. Each methodology has advantages, but they also have drawbacks such as high rates of damage omission or reliance upon a near-infrared camera, which may be prohibitively expensive for some land managers and scientists. Our objective was to develop a methodology that could be easily implemented to conduct wild pig …

Coexistence Conservation: Time To Change The Paradigm, Jorge Tobajas

Human–Wildlife Interactions

This letter to the editor recommends that coexistence conservation should be recognized as a new discipline within conservation biology with vast potential for the future of biodiversity conservation. The term “coexistence conservation” must be broadened to accommodate different techniques and their development, regardless of the context of invasive species.

Forthcoming Hwi Monographs

Human–Wildlife Interactions

The HWI Monograph Series is publishing open access monographs on free-ranging domestic cats and coyotes.

Impacts Of Wildlife–Vehicle Collisions Create Cascade Effects, S. Nicole Frey

Human–Wildlife Interactions

This is the letter from the editor-in-chief of Volume 18, Issue 2.

Flashtags: Evaluating A Novel Deterrent To Reduce Livestock Depredation, C. Aaron Bott, Stewart W. Breck, Tom W. Murphy, Brad A. Freking, Carlos A. López González, David Prause, Corey Peavey, Albert Sommers, Coke Landers, Julie K. Young

Human–Wildlife Interactions

Social tolerance of carnivores can be improved by preventing conflicts through nonlethal predator deterrents (e.g., livestock protection dogs [Canis lupus familiaris] and human presence) that have been used for centuries. However, many livestock producers feel the existing preventative methods are inadequate for extensive production systems where livestock can be spread widely and have less human supervision. To address this issue, we developed and tested a new nonlethal tool called FlashTags to reduce livestock predation. FlashTags are ear tags worn by livestock that flash a random-light pattern at night when motion-triggered. In the first year, we tested the devices …

Is Mitigation Translocation An Effective Method For Reducing Laysan Albatross–Military Aircraft Collisions?, Brian E. Washburn, Katherine D. Rubiano, William P. Bukoski

Human–Wildlife Interactions

Wildlife–aircraft collisions (wildlife strikes) pose a serious risk to civil and military aircraft. Each year, Laysan albatrosses (Phoebastria immutabilis) attempt to establish a breeding colony on the airfield at the U.S. Navy’s Pacific Missile Range Facility (PMRF) located on the island of Kaua‘i, Hawai‘i, USA, resulting in a hazard to safe military aircraft operations at this facility. A long-term management program, with an emphasis on mitigation translocation (e.g., live-capture and translocation away from the area) of problematic individuals, has been conducted by the U.S. Department of Agriculture, Wildlife Services. However, the efficacy of mitigation translocation as a nonlethal …

New Associate Editors, S. Nicole Frey

Human–Wildlife Interactions

New associate editors include Neil Jordan and Allen Rutberg.

Public Benefits And Private Costs: Implications For Moose Management In The Adirondacks, Heidi E. Kretser, Nancy A. Connelly, T. Bruce Lauber, Richard C. Stedman, Jeremy Hurst, David W. Kramer, James H. Stickles

Human–Wildlife Interactions

Private lands beyond protected area boundaries have long been recognized as important to sustaining wildlife as a public resource. However, private landowners may perceive disproportionate negative impacts from wildlife sustained by these lands, and these perceptions may impede effective management. We explore perceived issues related to managing moose (Alces alces), a Species of Greatest Conservation Need in New York State (NYS), USA, as a public benefit while simultaneously addressing private landowners’ concerns. We examined the public benefits of moose and attitudes toward potential management actions using surveys of NYS residents and Northern New York (NNY) residential landowners. We …