Life Sciences Commons^™

Impact Of Probiotic Veillonella Atypica Fb0054 Supplementation On Anaerobic Capacity And Lactate, Kristen Gross, Marina Santiago, Joesi M. Krieger, Anthony M. Hagele, Kinga Zielinska, Jonathan Scheiman, Ralf Jäger, Alex Kostic, Chad Kerksick

Faculty Scholarship

Seven healthy, physically active men (n = 3) and women (n = 4) (30.7 ± 7.5 years, 172.7 ± 8.7 cm, 70.4 ± 11.6 kg, 23.6 ± 4.1 kg/m², 49.2 ± 8.4 mL/kg/min) supplemented for 14 days with a placebo (PLA) or 1 × 10¹⁰ CFU doses of the probiotic Veillonella atypica FB0054 (FitBiomics, New York, NY). Participants had safety panels, hemodynamics, lactate, and anaerobic capacity assessed. Stool samples were collected to evaluate for metagenomic and metabolomic changes. Exhaustion times were not different between groups, whereas anaerobic capacity tended to shorten with PLA (61.14 ± 72.04 s; 95% CI: −5.49, …

Seagrass Epibiont Biodiversity In The Northern Gulf Of Mexico, Kathryn Wyssmann

LSU New Orleans Theses and Dissertations

Epibionts on seagrass leaves contribute substantially to productivity and trophic interactions in seagrass ecosystems. Differences in epibiont assemblages and factors that contribute to epibiont diversity have been little studied on the seagrass Halodule wrightii in the northern Gulf of Mexico (nGoM). We used a metabarcoding approach to describe epibiont assemblages on H. wrightii leaves in four bays across the nGoM and to test whether epibiont assemblages differed spatially at local levels (within bays) or regional levels (from west to east). Furthermore, we tested if epibiont diversity was related to environmental conditions and/or seagrass productivity. Epibiont assemblages differed significantly between bays …

Gut Microbial Communities Of Hybridising Pygmy Angelfishes Reflect Species Boundaries, Megan J. Huggett, Jean-Paul A. Hobbs, Federico Vitelli, Michael Stat, Tane H. Sinclair-Taylor, Michael Bunce, Joseph D. Dibattista

Research outputs 2022 to 2026

Hybridisation and introgression of eukaryotic genomes can generate new species or subsume existing ones, with direct and indirect consequences for biodiversity. An understudied component of these evolutionary forces is their potentially rapid effect on host gut microbiomes, and whether these pliable microcosms may serve as early biological indicators of speciation. We address this hypothesis in a field study of angelfishes (genus Centropyge), which have one of the highest prevalence of hybridisation within coral reef fish. In our study region of the Eastern Indian Ocean, the parent fish species and their hybrids cohabit and display no differences in their diet, behaviour, …

Assessing Risks For Bovine And Zoonotic Tuberculosis Through Spatial Analysis And A Questionnaire Survey In Fiji – A Pilot Study, Jenny-Ann L. M. L. Toribio, Keresi Lomata, Sam Fullman, Aaron Jenkins, Elva Borja, Shumaila Arif, Jarrad Mckercher, David Blake, Anabel Garcia, Richard J. Whittington, Frank Underwood, Ben J. Marais

Research outputs 2022 to 2026

Mycobacterium bovis causes tuberculosis in cattle and when transmitted to humans typically causes extra-pulmonary tuberculosis (EPTB). Bovine tuberculosis (bTB) has a global distribution and is controlled in most countries to protect animal and public health. Recent studies revealed that bTB is established on dairy farms in Fiji where EPTB cases have been reported in people. The aims of this pilot investigation were to look for putative zoonotic TB (EPTB) cases in people and to evaluate practices that might contribute to the persistence and transmission of M. bovis between cattle and to humans. Existing data sets were shared between the Fiji …

Blastocyst Quality And Reproductive And Perinatal Outcomes: A Multinational Multicentre Observational Study, Haowen Zou, James M. Kemper, Elizabeth R. Hammond, Fengqin Xu, Gensheng Liu, Lintao Xue, Xiaohong Bai, Hongqing Liao, Songguo Xue, Shuqin Zhao, Lan Xia, Jean Scott, Vincent Chapple, Masoud Afnan, Dean E. Morbeck, Ben W. J. Mol, Yanhe Liu, Rui Wang

Research outputs 2022 to 2026

STUDY QUESTION: Does the transfer of single low-grade blastocysts result in acceptable reproductive and perinatal outcomes compared to the transfer of single good-grade blastocysts? SUMMARY ANSWER: The transfer of single low-grade blastocysts resulted in a reduced live birth rate of around 30% (14% for very low-grade blastocysts) compared to 44% for single good-grade blastocysts, but does not lead to more adverse perinatal outcomes. WHAT IS KNOWN ALREADY: It is known that low-grade blastocysts can result in live births. However, the current studies are limited by relatively small sample sizes and single-centre designs. Furthermore, evidence on perinatal outcomes after transferring low-grade …

Substantial Blue Carbon Sequestration In The World’S Largest Seagrass Meadow, Chuancheng Fu, Sofia Frappi, Michelle N. Havlik, Wells Howe, S. David Harris, Elisa Laiolo, Austin J. Gallagher, Pere Masqué, Carlos M. Duarte

Research outputs 2022 to 2026

Seagrass meadows are important sinks for organic carbon and provide co-benefits. However, data on the organic carbon stock in seagrass sediments are scarce for many regions, particularly The Bahamas, which accounts for up to 40.7% of the documented global seagrass area, limiting formulation of blue carbon strategies. Here, we sampled 10 seagrass meadows across an extensive island chain in The Bahamas. We estimate that Bahamas seagrass meadows store 0.42–0.59 Pg organic carbon in the top-meter sediments with an accumulation rate of 2.1–2.9 Tg annually, representing a substantial global blue carbon hotspot. Autochthonous organic carbon in sediments decreased from ~1980 onwards, …

Oregon State Rank Assessment For Oak Titmouse (Baeolophus Inornatus), Misty Nelson

Institute for Natural Resources Publications

Oregon state conservation status assessment for Oak Titmouse (Baeolophus inornatus) using NatureServe methodology, 2024.

Regulatory Mechanisms Of The Lbd40 Transcription Factor In Arabidopsis Thaliana Somatic Embryogenesis, Sanjay Joshi, Kristine Hill, Manohar Chakrabarti, Sharyn E. Perry

School of Integrative Biological & Chemical Sciences Faculty Publications

Somatic embryogenesis (SE) is a process by which an embryo is derived from somatic tissue. Transcription factors (TFs) have been identified that control this process. One such TF that promotes SE is AGAMOUS-like 15 (AGL15). Prior work has shown that AGL15 can both induce and repress gene expression. One way this type of dual function TF works is via protein interactions, so a yeast 2-hybrid (Y2H) screen was undertaken. One intriguing protein with which AGL15 interacted in Y2H was LBD40. LBD40 encodes a LATERAL ORGAN BOUNDARIES (LOB)-domain TF that is unique to plants and is primarily expressed during seed development. …

Analysis Of Triton Cg 110 Foaming Characteristics For Use As A Potential Fire Suppressant, Addison Cobb, Jeremy Cho

Undergraduate Research Symposium Lightning Talks

Background: Per-FluoroAlkyls (PFAs) are incredibly stable molecules which do not biodegrade. These chemicals have been linked with a series of health issues and environmental problems.

Problem: PFAs have been identified in most drinking water supplies in the United States. Large Amounts of this is due to Aqueous Fire-Fighting Foams (AFFF’s), which contain PFAs, seeping into the groundwater supply.

Solution: While little can be done about PFAs currently in groundwater supplies, replacing PFA-based AFFFs with newer Eco-AFFFs can halt AFFF contamination, and maintain firefighting suppression.

Super Parents: Preliminary Findings Of A Group-Based Parenting Intervention, Jens E. Jespersen, Cara D. Bosler, Ruth S. Slocum, Jennifer Hays-Grudo, Jerry Root, Laura Hubbs-Tait, Amanda Sheffield Morris

Journal of Human Sciences and Extension

Super Parents is a group-based, Extension-led parenting program developed to enhance the parent-child relationship. Implemented by trained Head Start staff using the train-the-trainer model, this effort is achieved by teaching positive parenting practices, increasing parents’ knowledge of child development, instructing parents in activities and exercises for enhancing their child’s executive function skills, and encouraging the use of mindfulness techniques in parenting. The specific aims of our study were to evaluate the program's effectiveness among parents of young children ages 0 to 5 by examining changes in parenting attitudes, mindfulness, executive function, parenting efficacy, stress, and child behavior. Through the use …

Impact Of Body Image Ideals On Form And Frequency Of Exercise In College Students, Isabella Dipippo

Honors Theses

Objective: Body image issues are very prevalent among college students and can cause a variety of physical and mental health problems as determined by previous research. The SUNY Cortland student population, which tends to have a higher active student population than other campuses, may have a unique correlation between exercise and body image. This study aims to examine the impact of body image ideals in SUNY Cortland students in relation to exercise habits.

Methods: This study was conducted through survey-based methodology and distributed to various classes and organizations of undergraduate SUNY Cortland students through Google Forms. A total sample of …

Exploring The Impact Of High-Temperature Stress On Physiological, Anatomical, Molecular, Productive, And Quality Parameters In Diverse Olive Cultivars, Bassam F. Alowaiesh, Taghreed S. Alnusaire

The Philippine Agricultural Scientist

Olive (Olea europaea L.) is one of the most important horticultural crops in Saudi Arabia. High temperatures are typical in most regions during the summer season. This study explored the effect of high temperatures on diverse olive cultivars (Manzanillo, Chemlali, and Picual) grown in three different geographical locations in Saudi Arabia (Sakaka, Basita, and Al-Qurayyat). Sakaka region was classified as a hot region, while the Basita and Al-Qurayyat regions were characterized by relatively mild or low temperatures. Genotypic components were assessed by studying Amplified Fragment Length Polymorphism (AFLP) molecular markers and physiological, anatomical, productive, and oil quality parameters. The …

Exploring The Nutritional, Antioxidant, And Lipid-Lowering Properties Of Saba Banana (Musa Acuminata X Balbisiana Bbb Group) Peels, Paul Alteo Bagabaldo, Liezl M. Atienza, Katherine Ann T. Castillo-Israel, Aimee Sheree A. Barrion, Antonio C. Laurena, Maria Amelita C. Estacio

The Philippine Agricultural Scientist

This study investigated the nutritional and functional components of ‘saba’ banana peel (SBP) to determine its health-promoting potential for special food applications. SBP has undergone analyses measuring proximate composition, vitamin C, antioxidant activity, phytochemical content, estimated glycemic index (eGI), pancreatic lipase inhibition, and cholesterol micellar solubility inhibition. Data were processed using SPSS v20 and expressed as mean ± SD. Proximate analysis showed that SBP contained 83.83 ± 1.06% moisture, 6.74 ± 0.83% crude fat, 5.58 ± 0.24% crude protein, 9.97 ± 0.04% total ash, 9.91 ± 0.10% crude fiber, and 60.08% nitrogen-free extracts. Vitamin C content was found to be …

Crispr-Cas Enabled Dna Nanotechnology For Advanced Pathogen Detection, Mahera J. Kachwala

Legacy Theses & Dissertations (2009 - 2024)

The ever-growing list of carcinogens, toxicants, pathogens, and other disease-causing agents necessitates the development of new and improved mechanisms of disease detection. A better understanding of events leading up to the diseased state and early diagnosis is imperative for the timely management and targeted treatment of diseases affecting the biological world. Recent achievements in DNA nanotechnology have led to the prominence of DNA-based technologies for multiplexed biological sensing, high-throughput analysis, and improved diagnostics. Typical methods of disease detection employ complex multi-step procedures and advanced equipment, which significantly reduces their accessibility while elevating their cost. DNA functionalized sensing systems that examine …

Identification Of Genes Conferring Resistance To 2-Amino-3-Methylimidazo [4,5-F] Quinoline Genotoxicity In Budding Yeast Using High-Throughput And Targeted Approaches, Michael J. Dolan

Legacy Theses & Dissertations (2009 - 2024)

Heterocyclic aromatic amines (HAAs) are potent carcinogenic agents found in charred read meat and cigarette smoke. We hypothesize that HAAs may contribute to red meat being a risk factor for colorectal cancer (CRC). At present, few eukaryotic genes conferring resistance to HAAs have been identified. In this research, the genome of Saccharomyces cerevisiae (budding yeast) was profiled using next-generation sequencing to identify genes conferring resistance to one such HAA, 2-amino-3-methylimidazo[4,5-f] quinoline (IQ).CYP1A2 and NAT2 activate IQ to become a mutagenic nitrenium compound. Deletion libraries expressing human CYP1A2 and NAT2 or no human genes were exposed to either 400 or 800 …

Overexpression Of Plasminogen Activator Inhibitor-1 (Pai-1) In Human Kidney Cells, Khadija Rafiqi

Legacy Theses & Dissertations (2009 - 2024)

The research focuses on two key objectives: Mapping renal epithelial cells' response to PAI-1 overexpression and investigating the potential activation of signaling kinases in this context. Utilizing Proteome profiler kits and western blot analysis, the aim is to unravel the underlying mechanisms and signaling pathways involved. By exploring these complexities, the thesis aims to advance our understanding of kidney inflammation and its potential contribution to targeted therapeutic approaches in the future.

Effects Of Aerobic Exercise On Rage And Lrp1 In Stz And Hfd Models Of Diabetes: Relationship With Cognitive Function And Aβ Clearance, Corey Joseph Frank

Legacy Theses & Dissertations (2009 - 2024)

The number of individuals with diabetes worldwide has quadrupled since 1980, making diabetes the 4th most common cause of death from non-communicable disease. Since 1975, the number of individuals classified as obese has tripled to 650 million adults, or 13% of the global population (World Health Organization, 2018). Obesity rates in the United States are three times the global average, with 39.8% of adults having a body-mass index of 30 or greater (Hales, 2017). At the same time, in the United States, AD is the sixth most common cause of death, with 5.8 million currently diagnosed, a number that may …

Bookending The Germ Cell To Maternal Transition: Dynamics Of Gene Regulation In Drosophila Oogenesis, Kahini Sarkar

Legacy Theses & Dissertations (2009 - 2024)

Throughout the process of oogenesis, spanning from flies to humans, germ cells undergo a remarkable transformation, transitioning from a mitotic to a meiotic cell cycle. This intricate journey involves highly specialized cellular processes and culminates in the establishment of a maternal contribution, which plays a crucial role in promoting proper embryogenesis. Despite the significance of these transitions, their regulatory mechanisms have remained largely elusive, until now.

Exploring The Molecular Landscape Of Hepatitis C Virus: Insights Into Viral Replication And Host Interactions, Deniece Brown

Legacy Theses & Dissertations (2009 - 2024)

Hepatitis C Virus (HCV) remains a pressing global health concern, affecting millions of individuals worldwide. Gaining a thorough understanding of the virus's life cycle is pivotal for devising effective treatment strategies. This thesis takes a deep dive into the various stages of HCV's lifecycle, encompassing viral entry, replication, assembly, and release. By unraveling the intricacies of these processes, researchers can pinpoint potential targets for therapeutic interventions.

Induction Of Protective Immunity In The Respiratory Tract With Ricin Toxin Immune Complexes, Lindsey Elizabeth Tolman

Legacy Theses & Dissertations (2009 - 2024)

Ricin toxin (RT) is generated in the seeds of Ricinus communis. The highly potent toxin is comprised of two subunits, RTA and RTB. RT enters cells using RTB before RTA separates itself and inactivates the ribosome, inducing cell stress, inflammation, and eventual death. RT is particularly damaging in the respiratory tract, where intoxication induces an inflammatory cytokine storm.Though there are currently no therapeutics for RT intoxication, our group has generated and characterized a wide variety of monoclonal antibodies (mAbs) against RT. Among the top candidates in our collection are the IgGs PB10 and SylH3. Previous studies have demonstrated their exceptional …

Non-Invasive Focused Ultrasound Treatment To Improve Depressive-Like Behavior In A Hemi-Parkinsonian Rat Model, Huda Rehman

ALL - Honors Theses

Parkinson’s disease (PD) is a neurodegenerative disorder in which there is a depletion of dopaminergic neurons in the substantia nigra pars compacta (SNc). Symptoms include those that are motor, such as tremors and rigidity, along with symptoms that are nonmotor, such as depression. Depression in Parkinson’s disease is seen in up to 50% of PD patients, and is often treated with traditional antidepressants, with varying levels of efficacy. In this research project, focused ultrasound was used as a non-pharmacological and non-invasive treatment to improve depressive-like behavior in a hemi-Parkinsonian rat model. To induce a hemi-Parkinsonian phenotype in rats, stereotaxic surgeries …

Pathogenic Leptospira Are Widespread In The Urban Wildlife Of Southern California, Sarah K. Helman, Amanda F.N. Tokuyama, Riley O. Mummah, Nathan E. Stone, Mason W. Gamble, Celine E. Snedden, Benny Borremans, Ana C.R. Gomez, Caitlin Cox, Julianne Nussbaum, Isobel Tweedt, David A. Haake, Renee L. Galloway, Javier Monzón, Seth P.D. Riley, Jeff A. Sikich, Justin Brown, Anthony Friscia, Jason W. Sahl, David M. Wagner

All Faculty Open Access Publications

Leptospirosis, the most widespread zoonotic disease in the world, is broadly understudied in multi-host wildlife systems. Knowledge gaps regarding Leptospira circulation in wildlife, particularly in densely populated areas, contribute to frequent misdiagnoses in humans and domestic animals. We assessed Leptospira prevalence levels and risk factors in five target wildlife species across the greater Los Angeles region: striped skunks (Mephitis mephitis), raccoons (Procyon lotor), coyotes (Canis latrans), Virginia opossums (Didelphis virginiana), and fox squirrels (Sciurus niger). We sampled more than 960 individual animals, including over 700 from target species in the greater Los Angeles region, and an additional 266 sampled opportunistically …

Dna Barcoding Indicates Multiple Invasions Of The Freshwater Snail Melanoides Tuberculata Sensu Lato In Florida, Lori Tolley-Jordan, Michael A. Chadwick, Jimmy K. Triplett

Research, Publications & Creative Work

Melanoides tuberculata sensu lato (Thiaridae) are polymorphic female-clonal snails of Asian and African origins that have invaded freshwaters worldwide, including those in Florida. Although the snails have been documented in Florida for at least 70 years, no studies have investigated whether the observed distribution is due to a single introduction or multiple independent invasions. Here, cytochrome oxidase I was used to measure genetic diversity within and among sites in Florida and compare genetic diversity between Florida and other regions of the world. We also examined the relationship between shell morphology and haplotype diversity to determine if shell morphs can serve …

Fabrication Of Novel Electropolymerized Conductive Polymer Of Hydrophobic Perfluorinated Aniline As Transducer Layer On Glassy Carbon Electrode: Application To Midazolam As A Model Drug Of Benzodiazepines, Ekram Hany Mohamed, Amr Mahmoud,, , Nancy Nashat, Sally El-Mosallamy

Pharmacy

The objective of this study is to fabricate solid-contact ion selective electrodes (SC-ISEs) that have long term stable potential. Various conducting polymers such as polyaniline and its derivatives have been successfully employed to improve the potential stability in SC-ISEs. Recently, the role of hydrophobicity at the interface between the conducting polymer solid contact and the ion sensing membrane has been investigated and figured out that the hydrophobic interfaces preclude water layer formation that deteriorate the SC-ISEs potential stability and reproducibility. In this work, a hydrophobic polyaniline derivative was fabricated on the surface of a glassy carbon electrode by electropolymerization of …

Synthesis Of Bacterial Glycerophospholipids For Biomembrane Model Studies: A Means To Advanced Biofuels, Felix Adulley

Electronic Theses and Dissertations

To reduce reliance on fossil fuels, sustainable biofuels are being pursued, especially advanced biofuels like 1-butanol that have higher energy content and greater compatibility with existing infrastructure than ethanol. A persistent challenge is the yield-limiting toxicity of biofuels and process solvents, such as tetrahydrofuran, to the microbes that ferment biomass into biofuel. The cell membrane is a focal point of toxicity, and understanding how it interacts with fuels and solvents is key to improving yield. Phospholipid bilayers are the core of biomembranes, and model biomembranes of defined composition provide the ideal platform for biophysical studies. To this end, glycerophospholipids characteristic …

Effect Of Macrophage Expressed Α7 Nicotinic Acetylcholine Receptor (Α7nachr) On Migration Of Macrophages During Inflammation, Kasey Keever

Electronic Theses and Dissertations

Sepsis is a life-threatening condition characterized by overwhelming inflammation, resulting in organ system damage, leading to a high mortality rate. Care in the clinical setting is supportive, and there are no approved sepsis-specific treatments. In septic mice, activation of the cholinergic anti-inflammatory pathway decreases cytokine secretion by leukocytes and improves survival. The cholinergic anti-inflammatory pathway is a reflex of the parasympathetic nervous system, converging on the α7 nicotinic acetylcholine (α7nAChR) at the surface of macrophages. Signaling through the receptor blocks NF-kB activation, thus cytokine secretion. Receptor activation has other effects on macrophages, including modulating their migration to …

Flavonol Glucosylation: A Structural Investigation Of The Flavonol Specific 3-O Glucosyltransferase Cp3gt, Aaron S. Birchfield

Electronic Theses and Dissertations

Flavonoid glycosyltransferases (GTs), enzymes integral to plant ecological responses and human pharmacology, necessitate rigorous structural elucidation to decipher their mechanistic function and substrate specificity, particularly given their role in the biotransformation of diverse pharmacological agents and natural products. This investigation delved into a comprehensive exploration of the flavonol 3-O GT from Citrus paradisi (Cp3GT), scrutinizing the impact of a c-terminal c-myc/6x histidine tag on its enzymatic activity and substrate specificity, and successfully achieving its purification to apparent homogeneity. This established a strong foundation for potential future crystallographic and other structure/function analyses. Through the strategic implementation of site-directed mutagenesis, a thrombin …

Intestinal Microbiome, Fecal Fermentation Profile, And Health Indices In Hiv Infected Men Versus Non-Infected Controls, Mary Andreae, Mary C. Andreae Mrs

Electronic Theses and Dissertations

Many HIV-positive (HIV+) males on Highly Active Anti-Retroviral Therapy (HAART) experience metabolic abnormalities, including Non-Alcoholic Fatty Liver Disease (NAFLD) and lipodystrophy. The intestinal microbiota and short chain fatty acids (SCFA), participate in bidirectional communication with their host. Dysbiosis in HIV+ males on HAART demonstrate a Prevotella-rich enterotype shaped by multiple factors including, medications, adiposity, diet, intestinal permeability, and lifestyle; our objective was to investigate these factors. 19 HIV+ and 21 HIV- males were enrolled. BMI and hip-to-waist ratio (H:W) were obtained, and FibroScan for liver health. Intestinal permeability markers Claudin-21, flagellin, and intestinal fatty acid binding protein (IFABP) in …

Elucidation Of The Role Of Avocado Wri1 And Wri2 And Their Ability To Affect Oil Content And Composition When Co-Expressed With Pdat1 And Dgat1, Jyoti Ranjan Behera

Electronic Theses and Dissertations

Plants synthesize and store oil, mostly as triacylglycerols (TAG), in seeds that is transcriptionally controlled by WRINKLED1 (WRI1), an APETALA2 (AP2) transcription factor. Among the four Arabidopsis WRI paralogs, WRI2 is nonfunctional, while the others are expressed in a tissue-specific manner. Additionally, two rate-limiting enzymes, diacylglycerol acyltransferase (DGAT) and phospholipid diacylglycerol acyltransferase (PDAT) catalyze the terminal step in TAG assembly and contribute to oil accumulation. Avocado (Persea americana) mesocarp, a non-seed tissue, accumulates significant amounts of TAG (~70% by dry weight) enriched with heart-healthy oleic acid. The oil accumulation stages in mesocarp coincide with the high expression of …

Determining The Effects Of Glycocalyx Modifications On The Electrophysical Properties Of Human Mesenchymal Stem Cells, Rominna E. Valentine Ico

Electronic Theses, Projects, and Dissertations

Human mesenchymal stem cells (hMSCs) have gained popularity in clinical trials due to their multipotent differentiation characteristics, ability to secrete bioactive molecules, migrate into diseased or damaged tissues, and their immunosuppressive properties. HMSC cultures are heterogeneous, containing stem cells, partially differentiated progenitor cells, and fully differentiated cells. One of the major challenges with hMSCs therapeutic potential is the inability to select specific cell subpopulations due to an insufficient number of biomarkers. Often the biomarkers used, like those for fluorescence-activated cell sorting, are not sufficient to define hMSCs because they overlap with other cell types. Consequently, there is a need to …