Life Sciences Commons^™

Unleaded: Montana’S Silent Epidemic, Erica Zurek

Graduate Student Theses, Dissertations, & Professional Papers

Lead is a cumulative toxin that can affect multiple systems in the human body. Exposure occurs through various sources, such as outdated and deteriorating infrastructure, paint, soil and drinking water. This project, a three-part audio series on lead exposure in Montana highlights various paths of exposure and how young children under age six years of age are particularly vulnerable. Part one is a story about a new state requirement to test all k-12 schools for lead in water fixtures. Part two: A house remodel exposes a family’s children to lead. Getting a diagnosis wasn’t easy. Part three: A look at …

Fathmm: Frameshift Aware Translated Hidden Markov Models, Genevieve Krause

Graduate Student Theses, Dissertations, & Professional Papers

No abstract provided.

Catch My Drift? Perceptions And Experiences Of Pesticide Contamination Of Organic Crops In Montana, Sarah Rodgers

Graduate Student Theses, Dissertations, & Professional Papers

Pesticide drift and inadvertent contamination pose particular risks to organic production. Some organic producers have lost their crops, certification, and/or organic markets because of contamination events. Through this thesis research, I explain the perceptions and experiences that certified organic farmers in Montana have about drift and inadvertent pesticide contamination. I conducted semi-structured interviews with eleven certified organic farmers from various regions of Montana. Along with one-on-one interviews with organic farmers, interviews with industry and regulatory officials were conducted to better understand the policies and procedures that control what happens when drift occurs at the state level. Industry and regulatory official …

Subfamily Clustering Using Label Uncertainty (For Transposable Element Families), Audrey M. Shingleton

Graduate Student Theses, Dissertations, & Professional Papers

Biological sequence annotation is typically performed by aligning a sequence to a database of known sequence elements. For transposable elements, these known sequences represent subfamily consensus sequences. When many of the subfamily models in the database are highly similar to each other, a sequence belonging to one subfamily can easily be mistaken as belonging to another, causing non-reproducible subfamily annotation. Because annotation with subfamilies is expected to give some amount of insight into a sequence’s evolutionary history, it is important that such annotation be reproducible. Here, we present our software tool, SCULU, which builds upon our previously-described methods for computing …

The Effects Of Fatigue On Landing Impact Forces And Postural Steadiness In Collegiate Volleyball Players, Zebadiah P. Boos

Graduate Student Theses, Dissertations, & Professional Papers

Background: The onset of exhaustion can reduce the performance of an athlete and may add to the risk of injury. This establishes the necessity to understand when and how the athlete’s performance is altered as they become fatigued in competition or practice. The aim of this study was to determine the effects of fatigue on dynamic and static tasks in collegiate volleyball athletes by implementing a fatiguing jump protocol. Methods: To replicate an in-game or in-practice situation, five sets of 30 countermovement jumps (CMJ) at 85% maximal height was implemented. Prior to the fatigue protocol, a baseline measure of CMJ …

Looking To The Future Of Wildlife Conservation: Durable Wildlife Policy For The 21st Century, Charlie R. Booher

Graduate Student Theses, Dissertations, & Professional Papers

Wildlife conservation in the United States was built by the dollars of consumptive users. Monies from the sale of hunting licenses, as well as excise taxes on firearms, ammunition, and archery tackle through the Pittman-Robertson Federal Aid in Wildlife Restoration Act (PR), currently fuel a complex system of wildlife conservation via multiple levels of government. However, the number of hunters in this country is rapidly declining, the sale of firearms and ammunition is increasingly unrelated to hunting, and contemporary consumers tend to express different values than traditional hunters. These changes pose significant challenges of relevancy and funding to state and …

Understanding The Utilization Of Woody Biomass Through The Perspectives Of Southwest United States Forest Service Land Managers: A Qualitative Study, Mary-Ellen Reyna

Graduate Student Theses, Dissertations, & Professional Papers

Dry ponderosa pine/mixed conifer stands in the Southwestern United States create an overabundance of woody biomass during restoration and fuel treatments. It has been the job of land managers and resource specialists to develop management goals and practices to treat stands and lower the risk of catastrophic wildfires while managing for accumulations of woody biomass. Knowing the limitations, setbacks, and successes will help researchers, the United States Forest Service, and other land managers better improve woody biomass utilization. In conjunction with three previous ForBio Southwest studies, we present results from ten phone interviews from three Arizona and New Mexico ranger …

Keeping What You Sow: Intellectual Property Rights For Plant Breeders And Seed Growers, Paulina B. Jenney

Graduate Student Theses, Dissertations, & Professional Papers

Over the last 150 years, the food system in the present-day United States has undergone a transformational restructuring, from a diversified, decentralized, network of farmers and seed growers, to one in which the majority of crop production is controlled by a few industrial corporations. The consolidation of power has been under-girded by the application of intellectual property rights (IPR)—especially utility patents—to plant varieties and genetic traits, which are leveraged to exclude small-scale seed growers from accessing quality germplasm. Patents and restrictive licensing agreements recapitulate colonial structures by appropriating common and traditionally community-held resources for profit, and by creating reliance on …

Evaluating The Use Of Camera Traps To Monitor Populations Of Ungulate Prey In The Russian Far East, Scott Johnston Waller

Graduate Student Theses, Dissertations, & Professional Papers

Efforts to recover endangered carnivore populations are often limited by insufficient populations of prey. When recovering prey populations, estimates of population density are invaluable metrics to monitor recovery efforts. In Russia, wildlife managers use the Formozov-Malyushev-Pereleshin (FMP) snow tracking method to estimate densities of ungulate prey of the Amur tiger (Panthera tigris). Yet, increasing variability in snow conditions and other challenges have limited its reliability. Camera traps offer a promising alternative approach since managers already use cameras to monitor tigers. However, the assumptions and study design necessary to implement capture-recapture models for tigers are different from those needed …

Evaluating The Management And Consequences Of Hybridization Between Nonnative Rainbow Trout And Native Westslope Cutthroat Trout, Anthony James Dangora

Graduate Student Theses, Dissertations, & Professional Papers

The introduction of nonnative fish is a major driver in the decline of native fish species. Nonnative rainbow trout (Oncorhynchus mykiss; RBT) introduced into the native range of westslope cutthroat trout (O. clarkii lewisi; WCT) have led to the introgressive hybridization between these two species. This widespread hybridization is a primary threat to the long-term persistence of WCT as it can cause population-level genomic extinction. Since there are no set management solutions for hybridization, there is a need to evaluate the different conservation approaches to ensure the persistence of WCT populations. Additionally, beyond propagule pressure, the array of drivers that …

Where Should Conservation Draw The Line And When Should It Push Forward, Jessica L. Mejia

Graduate Student Theses, Dissertations, & Professional Papers

No abstract provided.

Ecological Effects Of Prescribed Burning, Mechanical Cutting, And Post-Treatment Wildfire For Restoration Of Pinus Albicaulis, Enzo Paolo Martelli Moya

Graduate Student Theses, Dissertations, & Professional Papers

The field of ecological restoration is growing rapidly, increasing the need for reliable and generalizable information on the impacts of management interventions aimed to be restorative. Prescribed burning and mechanical cutting have been proposed as primary strategies for restoration. However, there is limited information on their efficacy and effects in subalpine forest types, suggesting that monitoring to inform adaptive management is a priority need. I used data from a 15-year, replicated before-after-control-impact (BACI) study on Pinus albicaulis (whitebark pine) restoration to assess the ecological effects of prescribed burning and mechanical cutting, with and without subsequent unplanned wildfire, as well as …

The Combination Of Tlr7/8 And Tlr4 Adjuvants In An Influenza Vaccine Produce Unique Antigen-Specific Adaptive Immunity And Protect Against Lethal Heterologous Influenza Challenge, Shelby Lynn Cole

Graduate Student Theses, Dissertations, & Professional Papers

Influenza virus infection is a global health concern resulting in death and illness each year, which disproportionally effects high-risk individuals. While there are several approved vaccines for seasonal influenza, there are some limitations to consider: current vaccines provide minimal cross protection against seasonally drifted influenza subtypes, influenza vaccine strains change each year, requiring timely manufacture of a new vaccine. Thus, vaccines capable of inducing a more robust and broadly protective immune response to multiple influenza subtypes remains a critical unmet need. Adjuvants and novel delivery systems are an interesting and promising avenue of exploration for enhancing and broadening seasonal influenza …

Assessing Soil Disturbance From Tethered Logging On Steep Slopes In Northern California, Karolyn Marie Fagundes

Cal Poly Humboldt theses and projects

The implementation of tethered harvesting allows for the expansion of mechanized logging onto steeper slopes. Recent updates to the California Forest Practice Rules have explicitly removed the slope limitation for logging equipment, provided it’s tethered. California is now witnessing the reintroduction of ground-based logging equipment on steep slopes. Previously, operating equipment on steep slopes was considered detrimental due to the potential for soil disturbance. However, tethered equipment interacts with the soil in a new way due to the use of a winch. Relatively few studies have attempted to quantify soil disturbance with this new practice. The goal of this study …

Determining Haplotype Specific X Chromosome Inactivation State And Related Epigenetic Features In Female X-Linked Genes, Ariah Dawn Mackie

Cal Poly Humboldt theses and projects

Females with heterozygous X-linked mutations are prone to pseudo-haploinsufficiency because random X chromosome inactivation (XCI) silences one of their two X chromosomes. A prior study explored the theory that reactivating the silenced healthy allele could be a treatment for pseudo-haploinsufficient females. The next step was to evaluate this approach in a clinically relevant stem cell model of the rare neurological disease CDKL5 Deficiency Disorder (CDD). It was necessary to validate X-inactivation state with respect to CDKL5 allele expression in one of these models. We explored CDKL5 allele expression in two populations of CDD female patient-derived induced pluripotent stem cells (iPSCs) …

Quantification, Isolation, Characterization, And Biogeography Of Thermoacidophilic Bacteria From Mesophilic Soils, Margaux Karp

Cal Poly Humboldt theses and projects

Many thermoacidophilic bacterial species thrive in hot springs, fumaroles, and geothermally heated soils. These habitats are globally distributed but often small in size and located distantly from similar habitats, and therefore the biogeography of thermoacidophiles may be similar to island biogeography of plants and animals. Little is known about dispersal of thermoacidophiles. In this study I aimed to quantify, isolate, and characterize thermoacidophilic bacteria from non-permissive habitats. I also used genetic approaches to compare these isolates to thermoacidophilic bacteria from permissive habitats to provide insight to their biogeography.

To determine if I could enrich thermoacidophiles from non-permissive habitats, and if …

Evaluating The Use Of Barn Owl Nest Boxes For Rodent Pest Control In Winegrape Vineyards In Napa Valley, Ashley N. Hansen

Cal Poly Humboldt theses and projects

Attracting natural enemies to farms to reduce pests has long been a part of integrated pest management for insects, but knowledge of the impact of raptors on rodents and other vertebrate pests is comparatively sparse. In this study, I compared rodent prey on winegrape vineyards in Napa California with and without occupied barn owl nest boxes. We collected data before the breeding season, when hunting pressure should be light, and again when adult owls were hunting actively to feed their chicks. I used the open-hole method to quantify an index of gopher activity, and Sherman live traps to estimate the …

Phylogenetic And Geographic Relationships Of Cheilostome Bryozoans In The Eastern Pacific, Hannah E. Lee

Cal Poly Humboldt theses and projects

The phylum Bryozoa is an incredibly diverse group of marine invertebrates with a widespread global distribution that is well suited for evolutionary studies but whose phylogenetic relationships are still poorly understood. Although recent studies on bryozoan taxonomies and phylogenies have increased, there is still a lack of assessment of species found at shallow water (<1 m) to intertidal depths. In this study, I aimed to expand the taxonomic sampling and assessment of the phylogenetic diversity of cheilostome bryozoans along the California coastline by utilizing mitochondrial DNA as well as inferring potential correlations between species presence and dispersal range both within and between rocky outer coast and sheltered harbor habitats. Illumina high-throughput sequencing was used to produce mitogenomes for cheilostome bryozoan samples collected off rocks from two rocky intertidal sites and off settlement panels from two harbor sites. Phylogenetic analyses generated evolutionary hypotheses of species relationships alongside geographic mapping of their distribution. This study identified 15 distinct species that represent 10 different families to form the first comprehensive phylogeny for multiple bryozoan families in California across a total range of approximately 973 km of coastline. Three genetically distinct species were found at multiple sites that are separated by a combination of rocky shores and sandy beaches, which indicates that the dispersal range of these species are not limited by geographic barriers along the coast of California. These results provide a future opportunity for further integration of this data with the phylogenies generated in this study to examine more robust evolutionary hypotheses for the phylogenetic and geographic relationships of Californian bryozoan species.

Activity Patterns Of The Del Norte Salamander (Plethodon Elongatus): Monitoring Plethodontid Behavior Using Pit Tag Surveys, Sabrina Horrack

Cal Poly Humboldt theses and projects

Semi-fossorial plethodontid salamanders exhibit behavioral plasticity to avoid desiccation, retreating underground to shelter from adverse conditions such as low precipitation and high temperatures. In this study, I used passive integrated transponder (PIT) tag surveys to monitor this behavior in the Del Norte salamander (Plethodon elongatus), a small plethodontid native to northwestern California and southwestern Oregon. Within its range, a climatic gradient exists in which coastal areas experience milder temperatures and high precipitation, while inland areas tend to have colder winters, hotter summers, and lower precipitation. By monitoring the activity patterns of this species in inland and coastal areas, …

Modulation Of Polyamines To Elucidate Function Within Osteogenesis Of Mesenchymal Stromal Cells, Amin S. Cressman

Cal Poly Humboldt theses and projects

Snyder-Robinson Syndrome (SRS), an X-linked intellectual disability that arises in children, exhibits debilitating phenotypes like severe osteoporosis. These patients demonstrate an inability to produce mineralized new bone in comparison to the rate at which bone is resorbed, thus leading to weaker skeletal structure and atraumatic fractures. The known cause of SRS is due to loss-of-function mutations within the gene that encodes Spermine Synthase (SMS). Loss of SMS enzymatic activity, which catalyzes the conversion of polyamines spermidine into spermine, demonstrates an increase in the spermidine/spermine ratio in all documented cases of this disorder. The involvement of polyamines in osteogenesis is still …

Geographic And Seasonal Variation Of Flying Squirrel Vocalizations In California, Travis A. Farwell

Cal Poly Humboldt theses and projects

Advancements in bioacoustics field studies have further elucidated spatial, temporal, and behavioral aspects of otherwise-cryptic species, as well as offering insights into species communication. The discovery of high-frequency vocalizations in North American flying squirrels in particular has allowed researchers to use ultrasonic acoustic recorders to detect these cryptic species in the wild. Investigations into vocalizations of northern flying squirrels (Glaucomys sabrinus) and southern flying squirrels (G. volans) have highlighted call type variation between species and the potential use of recorders as a tool to examine vocal activity patterns. However, high-frequency vocalizations had yet to be quantitatively …

The Effects Of Video Modeling And Video Feedback On Object Control Skills For Individuals With Autism Spectrum Disorder, Miguel Pelayo

Cal Poly Humboldt theses and projects

The purpose of this study was to analyze the impact of video modeling combined with immediate video feedback on the performance of object control skills used in the game of basketball for students with autism spectrum disorder (ASD). Two male students aged 12 and 13, who had a previous diagnosis of ASD and attended a middle school in Northern California were recruited for this study. A multiple baseline across behaviors single case design was used to determine the impact of the interventions on the performance of the basketball skills. Results from this study suggest that the combined use of video …

Collected Papers (On Various Scientific Topics), Volume Xiii, Florentin Smarandache

Branch Mathematics and Statistics Faculty and Staff Publications

This thirteenth volume of Collected Papers is an eclectic tome of 88 papers in various fields of sciences, such as astronomy, biology, calculus, economics, education and administration, game theory, geometry, graph theory, information fusion, decision making, instantaneous physics, quantum physics, neutrosophic logic and set, non-Euclidean geometry, number theory, paradoxes, philosophy of science, scientific research methods, statistics, and others, structured in 17 chapters (Neutrosophic Theory and Applications; Neutrosophic Algebra; Fuzzy Soft Sets; Neutrosophic Sets; Hypersoft Sets; Neutrosophic Semigroups; Neutrosophic Graphs; Superhypergraphs; Plithogeny; Information Fusion; Statistics; Decision Making; Extenics; Instantaneous Physics; Paradoxism; Mathematica; Miscellanea), comprising 965 pages, published between 2005-2022 in different …

Collected Papers (On Neutrosophic Theory And Its Applications In Algebra), Volume Ix, Florentin Smarandache

Branch Mathematics and Statistics Faculty and Staff Publications

This ninth volume of Collected Papers includes 87 papers comprising 982 pages on Neutrosophic Theory and its applications in Algebra, written between 2014-2022 by the author alone or in collaboration with 81 co-authors from 19 countries.

Collected Papers (On Neutrosophic Theory And Applications), Volume Viii, Florentin Smarandache

Branch Mathematics and Statistics Faculty and Staff Publications

This eighth volume of Collected Papers includes 75 papers comprising 973 pages on (theoretic and applied) neutrosophics, written between 2010-2022 by the author alone or in collaboration with 102 co-authors from 24 countries.

Collected Papers (On Neutrosophic Theory And Applications), Volume Vi, Florentin Smarandache

Branch Mathematics and Statistics Faculty and Staff Publications

This sixth volume of Collected Papers includes 74 papers comprising 974 pages on (theoretic and applied) neutrosophics, written between 2015-2021 by the author alone or in collaboration with 121 co-authors from 19 countries.

Small Tech, High Touch: A Permutation, Victor Christianto, Florentin Smarandache

Branch Mathematics and Statistics Faculty and Staff Publications

In an earlier paper published in a neutrosophic math journal (IJNS), we discussed a new approach to technology, which may be called as ‘opti-realism’ or ‘pess-optimism’ as alternative to utopianism based on technocracy, which may lead the world into global techno-totalitarianism. In this article, we submit a new approach to Nature and technology, which is more modest and humble, rather than a techno-utopianism version of reality that most futurists argue for. Our proposed approach resembles more to Myer-Briggs 16 types of personality, including IJNS, IFNS etc. In our scheme, there are 8 characters of approach toward technology which can lead …

Library Use For Agricultural Research By Undergraduate Students Of The Faculty Of Agriculture, Forestry And Wildlife Resources Management, University Of Calabar, Nigeria, Friday O. Idiku, Oliver Effiong Ntui, Dorathy Aje Iyamah, Love Eyo Abu, Dorcas Okaja Ochang

Library Philosophy and Practice (e-journal)

The study investigated the use of the University of Calabar library for agricultural research by students of the Faculty of Agriculture, Forestry and Wildlife Resources Management. The general objective of the study was to determine the use of the University of Calabar library for agricultural research by students of the Faculty of Agriculture, Forestry and Wildlife Resources Management. The specific objectives include to identify the number of students of the Faculty of Agriculture who registered with the University of Calabar library for the 2020/2021 academic session, identify the purpose of library use by students, assess the material and electronic resources …

It's A Small World After All: Insights, Interferences, And Implications Of In Situ Chlorophyll Fluorescence Monitoring In Estuaries, James Silas Tanner

UNF Graduate Theses and Dissertations

Concentrations of the photosynthetic pigment chlorophyll a are used as a proxy for phytoplankton biomass by estuarine scientists to study eutrophication, food web dynamics, and harmful algal blooms. Coastal managers use chlorophyll as an indicator of nutrient pollution and for assessments to meet Clean Water Act standards. Chlorophyll a, as measured in the laboratory by extraction from monthly discrete water samples, is a core component of the National Estuarine Research Reserve (NERR) System-Wide Monitoring Program (SWMP). Field-deployable sensors based on the excitation and emission spectra of in situ chlorophyll have not been incorporated into SWMP to date because past …

The Effect Of Visitor Density And Interaction On The Behavior Of Four Ray Species (Hypanus Sabina, Hypanus Say, Pseudobatos Lentiginosus, And Rhinoptera Bonasus) Housed In An Aquatic Touch Pool, Aimee Marie Little

UNF Graduate Theses and Dissertations

Human-Animal Interactions (HAI) in zoological institutions are thought to be important in helping visitors to establish a connection with animals and thus making them more likely to contribute to conservation efforts. However, animals can respond to visitor interaction in both negative and positive ways. The growing focus on animal welfare in zoological institutions emphasizes the need for assessing different environmental inputs, including visitor interaction, and how these inputs influence behavioral outputs associated with welfare. A touch pool exhibit presents a novel interactive experience that allows visitors to directly interact with various aquatic species, including elasmobranchs, whose conservation has important implications …