Open Access. Powered by Scholars. Published by Universities.®

Life Sciences Commons™

Open Access. Powered by Scholars. Published by Universities.®

2019

Discipline
Institution
Keyword
Publication
Publication Type
File Type

Articles 10111 - 10140 of 10619

Full-Text Articles in Life Sciences

Manipulation Of The Precursor Supply For High-Level Production Of Longifolene By Metabolically Engineered Escherichia Coli, Yujin Cao, Rubing Zhang, Wei Liu, Guang Zhao, Wei Niu, Jiantao Guo, Mo Xian, Huizhou Liu Jan 2019

Manipulation Of The Precursor Supply For High-Level Production Of Longifolene By Metabolically Engineered Escherichia Coli, Yujin Cao, Rubing Zhang, Wei Liu, Guang Zhao, Wei Niu, Jiantao Guo, Mo Xian, Huizhou Liu

Department of Chemical and Biomolecular Engineering: Faculty Publications

Longifolene is a naturally occurring tricyclic sesquiterpene widely used in many different fields. Up to now, this valuable terpene was mainly manufactured from the high-boiling fraction of certain pine resins. Microbial production can be a promising alternative to the extraction from natural plant sources. Here, we present the metabolic engineering strategy to assemble biosynthetic pathway for longifolene production in Escherichia coli. E. coli was rendered to produce longifolene by heterologously expressing a codon optimized longifolene synthase from Picea abies. Augmentation of the metabolic flux to farnesyl pyrophosphate (FPP) by different FPP synthases conferred a 1.8-fold increase in longifolene …


A Potential New Tool For The Toolbox: Assessing Gene Drives For Eradicating Invasive Rodent Populations, K. J. Campbell, J.R. Saah, P.R. Brown, J. Godwin, G.R. Howald, A. Piaggio, P. Thomas, D.M. Tompkins, D. Threadgill, J. Delborne, D.M. Kanavy, T. Kuiken, H. Packard, M. Serr, A. Shiels Jan 2019

A Potential New Tool For The Toolbox: Assessing Gene Drives For Eradicating Invasive Rodent Populations, K. J. Campbell, J.R. Saah, P.R. Brown, J. Godwin, G.R. Howald, A. Piaggio, P. Thomas, D.M. Tompkins, D. Threadgill, J. Delborne, D.M. Kanavy, T. Kuiken, H. Packard, M. Serr, A. Shiels

United States Department of Agriculture Wildlife Services: Staff Publications

Invasive rodents have significant negative impacts on island biodiversity. All but the smallest of rodent eradications currently rely on island-wide rodenticide applications. Although significant advances have been made in mitigating unintended impacts, rodent eradication on inhabited islands remains extremely challenging. Current tools restrict eradication eff orts to fewer than 15% of islands with critically endangered or endangered species threatened by invasive rodents. The Genetic Biocontrol of Invasive Rodents partnership is an interdisciplinary collaboration to develop and evaluate gene drive technology for eradicating invasive rodent populations on islands. Technological approaches currently being investigated include the production of multiple strains of Mus …


A Bioeconomic Model For The Optimization Of Local Canine Rabies Control, Aaron Anderson, Johann Kotze, Stephanie A. Shwiff, Brody Hatch, Chris Slootmaker, Anne Conan, Darryn Knobel, Louis H. Nel Jan 2019

A Bioeconomic Model For The Optimization Of Local Canine Rabies Control, Aaron Anderson, Johann Kotze, Stephanie A. Shwiff, Brody Hatch, Chris Slootmaker, Anne Conan, Darryn Knobel, Louis H. Nel

United States Department of Agriculture Wildlife Services: Staff Publications

We present a new modeling tool that can be used to maximize the impact of canine rabies management resources that are available at the local level. The model is accessible through a web-based interface that allows for flexibility in the management strategies that can be investigated. Rabies vaccination, sterilization, chemo-contraception, and euthanasia can be specified and limited to specific demographic groups. Additionally, we allowed for considerable complexity in the specification of management costs. In many areas, the costs of contacting additional dogs increases as management effort increases, and this can have important strategic implications. We illustrated the application of the …


Development Of Chlorophyll-Meter-Index-Based Dynamic Models For Evaluation Of High-Yield Japonica Rice Production In Yangtze River Reaches, Ke Zhang, Xiaojun Liu, Syed Tahir Ata-Ul-Karim, Songyang Li, Brian Krienke, Songyang Li, Qiang Cao, Yan Zhu, Weixing Cao, Yongchao Tian Jan 2019

Development Of Chlorophyll-Meter-Index-Based Dynamic Models For Evaluation Of High-Yield Japonica Rice Production In Yangtze River Reaches, Ke Zhang, Xiaojun Liu, Syed Tahir Ata-Ul-Karim, Songyang Li, Brian Krienke, Songyang Li, Qiang Cao, Yan Zhu, Weixing Cao, Yongchao Tian

Department of Agronomy and Horticulture: Faculty Publications

Accurate estimation of the nitrogen (N) spatial distribution of rice (Oryza sativa L.) is imperative when it is sought to maintain regional and global carbon balances. We systematically evaluated the normalized differences of the soil and plant analysis development (SPAD) index (the normalized difference SPAD indexes, NDSIs) between the upper (the first and second leaves from the top), and lower (the third and fourth leaves from the top) leaves of Japonica rice. Four multi-location, multi-N rate (0–390 kg ha-1) field experiments were conducted using seven Japonica rice cultivars (9915, 27123, Wuxiangjing14, Wunyunjing19, Wunyunjing24, Liangyou9, and Yongyou8). Growth …


Fire Legacies In Eastern Ponderosa Pine Forests, Caleb P. Roberts, Victoria M. Donovan, Carissa L. Wonkka, Larkin A. Powell, Craig R. Allen, David G. Angeler, David A. Wedin, Dirac L. Twidwell Jr Jan 2019

Fire Legacies In Eastern Ponderosa Pine Forests, Caleb P. Roberts, Victoria M. Donovan, Carissa L. Wonkka, Larkin A. Powell, Craig R. Allen, David G. Angeler, David A. Wedin, Dirac L. Twidwell Jr

Department of Agronomy and Horticulture: Faculty Publications

Disturbance legacies structure communities and ecological memory, but due to increasing changes in disturbance regimes, it is becoming more difficult to characterize disturbance legacies or determine how long they persist. We sought to quantify the characteristics and persistence of material legacies (e.g., biotic residuals of disturbance) that arise from variation in fire severity in an eastern ponderosa pine forest in North America. We compared forest stand structure and understory woody plant and bird community composition and species richness across unburned, low‐, moderate‐, and high‐severity burn patches in a 27‐year‐old mixed‐severity wildfire that had received minimal post‐fire management. We identified distinct …


Spatial Variability Of Soil Properties Under Different Land Use In The Dang District Of Nepal, Dinesh Panday, Roshan Babu Ojha, Devraj Chalise, Saurav Das, Bikesh Twanabasu Jan 2019

Spatial Variability Of Soil Properties Under Different Land Use In The Dang District Of Nepal, Dinesh Panday, Roshan Babu Ojha, Devraj Chalise, Saurav Das, Bikesh Twanabasu

Department of Agronomy and Horticulture: Faculty Publications

Increased nutrient mining, soil erosion, and limited nutrient management has led to declines in soil quality and reduced productivity in many parts of Nepal. A study was conducted in the eastern part of the Dang district of Nepal in 2015 to assess the variability of selected soil properties of three different land use types (agricultural, agroforestry, and grassland) and to map their spatial distribution. A total of 120 soil samples were collected from 0–15 cm depth and analyzed for soil fertility parameters: pH, organic matter (OM), nitrogen (N), phosphorus (P), potassium (K), boron (B), and zinc (Zn). Results revealed that …


Response Surface Analysis Of Genomic Prediction Accuracy Values Using Quality Control Covariates In Soybean, Diego Jarquin, Reka Howard, George L. Graef, Aaron Lorenz Jan 2019

Response Surface Analysis Of Genomic Prediction Accuracy Values Using Quality Control Covariates In Soybean, Diego Jarquin, Reka Howard, George L. Graef, Aaron Lorenz

Department of Agronomy and Horticulture: Faculty Publications

An important and broadly used tool for selection purposes and to increase yield and genetic gain in plant breeding programs is genomic prediction (GP). Genomic prediction is a technique where molecular marker information and phenotypic data are used to predict the phenotype (eg, yield) of individuals for which only marker data are available. Higher prediction accuracy can be achieved not only by using efficient models but also by using quality molecular marker and phenotypic data. The steps of a typical quality control (QC) of marker data include the elimination of markers with certain level of minor allele frequency (MAF) and …


Ponderosa Pine Regeneration,Wildland Fuels Management, And Habitat Conservation: Identifying Trade-Offs Following Wildfire, Victoria M. Donovan, Caleb P. Roberts, Carissa L. Wonkka, David A. Wedin, Dirac L. Twidwell Jan 2019

Ponderosa Pine Regeneration,Wildland Fuels Management, And Habitat Conservation: Identifying Trade-Offs Following Wildfire, Victoria M. Donovan, Caleb P. Roberts, Carissa L. Wonkka, David A. Wedin, Dirac L. Twidwell

Department of Agronomy and Horticulture: Faculty Publications

Increasing wildfires in western North American conifer forests have led to debates surrounding the application of post-fire management practices. There is a lack of consensus on whether (and to what extent) post-fire management assists or hinders managers in achieving goals, particularly in under-studied regions like eastern ponderosa pine forests. This makes it difficult for forest managers to balance among competing interests. We contrast structural and community characteristics across unburned ponderosa pine forest, severely burned ponderosa pine forest, and severely burned ponderosa pine forest treated with post-fire management with respect to three management objectives: ponderosa pine regeneration, wildland fuels control, and …


Beyond Bird Feed: Proso Millet For Human Health And Environment, Saurav Das, Rituraj Khound, Meenakshi Santra, Dipak K. Santra Jan 2019

Beyond Bird Feed: Proso Millet For Human Health And Environment, Saurav Das, Rituraj Khound, Meenakshi Santra, Dipak K. Santra

Department of Agronomy and Horticulture: Faculty Publications

Domesticated in 8000–10,000 BP in northern China, proso millet (Panicum miliaceum L.) is the best adaptive rotational crop for semiarid central High Plains of the USA, where average annual precipitation is 356–407 mm. Proso millet has multiple benefits when consumed as human food. Proso millet is rich in minerals, dietary fiber, polyphenols, vitamins and proteins. It is gluten-free and therefore, ideal for the gluten intolerant people. Proso millet contains high lecithin which supports the neural health system. It is rich in vitamins (niacin, B-complex vitamins, folic acid), minerals (P, Ca, Zn, Fe) and essential amino acids (methionine and cysteine). …


Developments In Agricultural Soil Quality And Health: Reflections By The Research Committee On Soil Organic Matter Management, Michelle M. Wander, Larry J. Cihacek, Mark Coyne, Rhae A. Drijber, Julie M. Grossman, Jessica L. M. Gutknecht, William R. Horwath, Sindhu Jagadamma, Daniel C. Olk, Matt Ruark, Sieglinde S. Snapp, Lisa K. Tiemann, Ray Well, Ronald F. Turco Jan 2019

Developments In Agricultural Soil Quality And Health: Reflections By The Research Committee On Soil Organic Matter Management, Michelle M. Wander, Larry J. Cihacek, Mark Coyne, Rhae A. Drijber, Julie M. Grossman, Jessica L. M. Gutknecht, William R. Horwath, Sindhu Jagadamma, Daniel C. Olk, Matt Ruark, Sieglinde S. Snapp, Lisa K. Tiemann, Ray Well, Ronald F. Turco

Department of Agronomy and Horticulture: Faculty Publications

The North Central Education and Research Activity Committee (NCERA-59) was formed in 1952 to address how soil organic matter formation and management practices affect soil structure and productivity. It is in this capacity that we comment on the science supporting soil quality and associated soil health assessment for agricultural lands with the goal of hastening progress in this important field. Even though the suite of soil quality indicators being applied by U.S. soil health efforts closely mirrors the “minimum data set” we developed and recommended in the mid-1990s, we question whether the methods or means for their selection and development …


Molecular Marker Dissection Of Stem Rust Resistance In Nebraska Bread Wheat Germplasm, Amira M. I. Mourad, Ahmed Sallam, Vikas Belamkar, Stephen Wegulo, Guihua Bai, Ezzat Mahdy, Bahy Bakheit, Atif Abo El-Wafa, Yue Jin, P. Stephen Baenziger Jan 2019

Molecular Marker Dissection Of Stem Rust Resistance In Nebraska Bread Wheat Germplasm, Amira M. I. Mourad, Ahmed Sallam, Vikas Belamkar, Stephen Wegulo, Guihua Bai, Ezzat Mahdy, Bahy Bakheit, Atif Abo El-Wafa, Yue Jin, P. Stephen Baenziger

Department of Agronomy and Horticulture: Faculty Publications

Stem rust (caused by Puccinia graminis f. sp. tritici) is a major disease of wheat. To understand the genetic basis of stem rust resistance in Nebraska winter wheat, a set of 330 genotypes representing two nurseries (DUP2015 and TRP2015) were evaluated for resistance to a Nebraska stem rust race (QFCSC) in two replications. The TRP2015 nursery was also evaluated for its resistance to an additional 13 stem rust races. The analysis of variance revealed significant variation among genotypes in both populations for stem rust resistance. Nine stem rust genes, Sr6, Sr31, Sr1RSAmigo, Sr24, Sr36 …


Selection Of Bread Wheat For Low Grain Cadmium Concentration At The Seedling Stage Using Hydroponics Versus Molecular Markers, Caixia Liu, Mary J. Guttieri, Brian M. Waters, Kent M. Eskridge, P. Stephen Baenziger Jan 2019

Selection Of Bread Wheat For Low Grain Cadmium Concentration At The Seedling Stage Using Hydroponics Versus Molecular Markers, Caixia Liu, Mary J. Guttieri, Brian M. Waters, Kent M. Eskridge, P. Stephen Baenziger

Department of Agronomy and Horticulture: Faculty Publications

The excessive accumulation of Cd in harvested crops grown on high-Cd soils has increased public concerns for food safety. Due to the high consumption of bread wheat (Triticum aestivum L.) per capita, high concentrations of Cd in wheat grain can significantly affect human health. Breeding is a promising way to reduce grain Cd concentration. However, a lack of efficient selection methods impedes breeding for low grain Cd concentration in bread wheat. In this study, a recombinant inbred population segregating for grain Cd concentration was used to assess the efficacy of two selection methods for decreasing grain Cd concentration in …


Optimum Droplet Size Using A Pulse-Width Modulation Sprayer For Applications Of 2,4-D Choline Plus Glyphosate, Thomas R. Butts, Chase A. Samples, Lucas X. Franca, Darrin M. Dodds, Daniel B. Reynolds, Jason W. Adams, Richard K. Zollinger, Kirk A. Howatt, Bradley K. Fritz, W. Clint Hoffmann, Joe D. Luck, Greg Kruger Jan 2019

Optimum Droplet Size Using A Pulse-Width Modulation Sprayer For Applications Of 2,4-D Choline Plus Glyphosate, Thomas R. Butts, Chase A. Samples, Lucas X. Franca, Darrin M. Dodds, Daniel B. Reynolds, Jason W. Adams, Richard K. Zollinger, Kirk A. Howatt, Bradley K. Fritz, W. Clint Hoffmann, Joe D. Luck, Greg Kruger

Department of Agronomy and Horticulture: Faculty Publications

The delivery of an optimum herbicide droplet size using pulse-width modulation (PWM) sprayers can reduce potential environmental contamination, maintain efficacy, and provide more flexible options for pesticide applicators. Field research was conducted in 2016, 2017, and 2018 across three locations (Mississippi, Nebraska, and North Dakota) for a total of 6 site-years. The objectives were to evaluate the efficacy of a range of droplet sizes (150 μm [Fine] to 900 μm [Ultra Coarse]) using a 2,4-D choline plus glyphosate pre-mixture and to create novel weed management recommendations using PWM sprayer technology. A pooled site-year generalized additive model explained less than 5% …


Context-Specific Genomic Selection Strategies Outperform Phenotypic Selection For Soybean Quantitative Traits In The Progeny Row Stage, Christopher J. Smallwood, Arnold M. Saxton, Jason D. Gillman, Hem S. Bhandari, Phillip A. Wadl, Benjamin D. Fallen, David L. Hyten, Qijian Song, Vincent R. Pantalone Jan 2019

Context-Specific Genomic Selection Strategies Outperform Phenotypic Selection For Soybean Quantitative Traits In The Progeny Row Stage, Christopher J. Smallwood, Arnold M. Saxton, Jason D. Gillman, Hem S. Bhandari, Phillip A. Wadl, Benjamin D. Fallen, David L. Hyten, Qijian Song, Vincent R. Pantalone

Department of Agronomy and Horticulture: Faculty Publications

Evaluating different breeding selection strategies for relative utility is necessary to choose those that maximize efficiency. Soybean [Glycine max (L.) Merr.] seed yield and fatty acid, protein, and oil contents are all commercially important traits that display complex quantitative inheritance. A soybean population consisting of 860 F5–derived recombinant inbred lines (RILs), genotyped with 4867 polymorphic single nucleotide polymorphism (SNPs) was used to compare phenotypic and context specific genomic selection (GS) strategies. To simulate progeny rows, each RIL was grown in a single plot in 2010 in Knoxville, TN, and phenotype was recorded. A subset of 276 RILs …


Cover Crops And Corn Residue Removal: Impacts On Soil Hydraulic Properties And Their Relationships With Carbon, Michael Sindelar, Humberto Blanco-Canqui, Virginia L. Jin, Richard B. Ferguson Jan 2019

Cover Crops And Corn Residue Removal: Impacts On Soil Hydraulic Properties And Their Relationships With Carbon, Michael Sindelar, Humberto Blanco-Canqui, Virginia L. Jin, Richard B. Ferguson

Department of Agronomy and Horticulture: Faculty Publications

Large-scale crop residue removal may negatively affect soil water dynamics. Integrating cover crop (CC) with crop residue management can be a strategy to offset potential adverse effects of residue removal. We studied: (i) the impact of corn (Zea mays L.) residue removal (56%) with and without the use of winter rye (Secale cereale L.) CC on soil hydraulic properties, (ii) whether CC would ameliorate residue removal effects on hydraulic properties, and (iii) relationships of hydraulic properties with soil organic C (SOC) and other properties under irrigated no-till continuous corn on a silt loam in south central Nebraska after …


Spatial Imaging And Screening For Regime Shifts, Daniel R. Uden, Dirac Twidwell, Craig R. Allen, Matthew O. Jones, David E. Naugle, Jeremy D. Maestas, Brady W. Allred Jan 2019

Spatial Imaging And Screening For Regime Shifts, Daniel R. Uden, Dirac Twidwell, Craig R. Allen, Matthew O. Jones, David E. Naugle, Jeremy D. Maestas, Brady W. Allred

Department of Agronomy and Horticulture: Faculty Publications

Screening is a strategy for detecting undesirable change prior to manifestation of symptoms or adverse effects. Although the well-recognized utility of screening makes it commonplace in medicine, it has yet to be implemented in ecosystem management. Ecosystem management is in an era of diagnosis and treatment of undesirable change, and as a result, remains more reactive than proactive and unable to effectively deal with today’s plethora of non-stationary conditions. In this paper, we introduce spatial imaging-based screening to ecology. We link advancements in spatial resilience theory, data, and technological and computational capabilities and power to detect regime shifts (i.e., vegetation …


Estimating Percentages Of Fusarium-Damaged Kernels In Hard Wheat By Near-Infrared Hyperspectral Imaging, Stephen R. Delwiche, I. Torres Rodriguez, S. R. Rausch, R. A. Graybosch Jan 2019

Estimating Percentages Of Fusarium-Damaged Kernels In Hard Wheat By Near-Infrared Hyperspectral Imaging, Stephen R. Delwiche, I. Torres Rodriguez, S. R. Rausch, R. A. Graybosch

Department of Agronomy and Horticulture: Faculty Publications

Fusarium head blight (FHB) is among the most common fungal diseases affecting wheat, resulting in decreased yield, low-density kernels, and production of the mycotoxin deoxynivalenol, a compound toxic to humans and livestock. Human visual analysis of representative wheat samples has been the traditional method for FHB assessment in both official inspection and plant breeding operations. While not requiring specialized equipment, visual analysis is dependent on a trained and consistent workforce, such that in the absence of these aspects, biases may arise among inspectors and evaluation dates. This research was intended to avoid such pitfalls by using longer wavelength radiation than …


Soil Fauna Accelerate Dung Pat Decomposition And Nutrient Cycling Into Grassland Soil, Kenneth S. Evans, Martha Mamo, Ana Wingeyer, Walter Schacht, Kent Eskridge, Jeff Bradshaw, Daniel Ginting Jan 2019

Soil Fauna Accelerate Dung Pat Decomposition And Nutrient Cycling Into Grassland Soil, Kenneth S. Evans, Martha Mamo, Ana Wingeyer, Walter Schacht, Kent Eskridge, Jeff Bradshaw, Daniel Ginting

Department of Agronomy and Horticulture: Faculty Publications

Soil fauna play critical roles in various ecosystem functions and services, but empirical data measuring their impact on dung pat decomposition and subsequent nutrient cycling into rangeland soils are limited. The objective of this study was to quantify the effect of soil fauna, using dung beetle as an indicator, on dung decomposition and subsequent translocation of dung nutrients into grassland soil over time. A field experiment was conducted early in the summer season and late in the summer season of 2014 and 2015. In each season, dung beetle abundance, changes in dung properties, and subsequent translocation of dung nutrients into …


Utilizing Trait Networks And Structural Equation Models As Tools To Interpret Multi‑Trait Genome‑Wide Association Studies, Mehdi Momen, Malachy T. Campbell, Harkamal Walia, Gota Morota Jan 2019

Utilizing Trait Networks And Structural Equation Models As Tools To Interpret Multi‑Trait Genome‑Wide Association Studies, Mehdi Momen, Malachy T. Campbell, Harkamal Walia, Gota Morota

Department of Agronomy and Horticulture: Faculty Publications

Background: Plant breeders seek to develop cultivars with maximal agronomic value, which is often assessed using numerous, often genetically correlated traits. As intervention on one trait will affect the value of another, breeding decisions should consider the relationships among traits in the context of putative causal structures (i.e., trait networks). While multi-trait genome-wide association studies (MTM-GWAS) can infer putative genetic signals at the multivariate scale, standard MTM-GWAS does not accommodate the network structure of phenotypes, and therefore does not address how the traits are interrelated. We extended the scope of MTM-GWAS by incorporating trait network structures into GWAS using structural …


Assessment Of Mudpuppy (Necturus Maculosus) Presence Along The St. Clair-Detroit River System Using Environmental Dna And Occupancy Modeling, Jenny L. Sutherland Jan 2019

Assessment Of Mudpuppy (Necturus Maculosus) Presence Along The St. Clair-Detroit River System Using Environmental Dna And Occupancy Modeling, Jenny L. Sutherland

Master's Theses and Doctoral Dissertations

The mudpuppy (Necturus maculosus) is cryptic, fully aquatic salamander within the Great Lakes region. Once abundant throughout its range, evidence now suggests that there have been declines due to habitat loss and lampricide use. Information on the status of mudpuppies along the St. Clair-Detroit River System (SCDRS) is lacking, and since they are important bio-indicators, they could be a gauge for restoration success. Environmental DNA (eDNA) and occupancy modeling were used to determine best detection practices for this cryptic species. Mudpuppy eDNA was detected at all known mudpuppy sites with the addition of one site. Occupancy was highest at shoreline …


The Cost Of Breeding In The Winter Versus The Summer In An Opportunistic, Northtemperate Songbird, The Red Crossbill (Loxia Curvirostra), Travis Draud Jan 2019

The Cost Of Breeding In The Winter Versus The Summer In An Opportunistic, Northtemperate Songbird, The Red Crossbill (Loxia Curvirostra), Travis Draud

Master's Theses and Doctoral Dissertations

Energy is the currency of life, where a surplus allows survival and reproduction and a longstanding debt leads to death, yet monitoring energy expenditures in free-living animals has been relatively limited by available technology. Radio transmitters that have been specially modified to detect heart rate, however, allow for real-time estimation of energy expense in free-living, behaving animals. Red crossbills live at northern latitudes year-round and breed opportunistically throughout much of the year. They therefore offer a unique opportunity to examine the ecophysiology of different life cycle stages under drastically variable seasonal conditions. Here we present heart rate data of free-living, …


The Effect Of Neonicotinoids On Apis Mellifera: A Revisit, Qingchen Liang Jan 2019

The Effect Of Neonicotinoids On Apis Mellifera: A Revisit, Qingchen Liang

Master's Theses and Doctoral Dissertations

Colony collapse disorder (CCD), which has caused high colony mortality rates in the European honeybee (Apis mellifera), is a pressing economical and ecological problem. I revisited Woodcock et al.'s (2017a) paper, "Country-specic Effects of Neonicotinoid Pesticides on Honey Bees and Wild Bees", in light of unsound statistical methods used in the original study. In the first part of this paper, I attempted to replicate the analysis underlying key findings in the original paper. In the second part, I reanalyzed the data using mostly non-parametric methods in order to obtain robust results. I did not find any evidence for a harmful …


Effects Of Inbreeding On Life-History Traits And Sexual Competency In Decorated Crickets, Scott K. Sakaluk, Jeannine Oldzej, Christine J. Poppe, Jenny L. Harper, Ian G. Rines, Kylie J. Hampton, Kristin R. Duffield, John Hunt, Ben M. Sadd Jan 2019

Effects Of Inbreeding On Life-History Traits And Sexual Competency In Decorated Crickets, Scott K. Sakaluk, Jeannine Oldzej, Christine J. Poppe, Jenny L. Harper, Ian G. Rines, Kylie J. Hampton, Kristin R. Duffield, John Hunt, Ben M. Sadd

Faculty Publications – Biological Sciences

Although inbreeding depression in life-history traits has been well characterized, inbreeding effects on mating behaviour and sexually selected traits have been less well studied. Here, we assess levels of inbreeding depression in a number of fitness-related reproductive parameters of female decorated crickets, Gryllodes sigillatus. We predicted that due to direct negative effects of inbreeding and a potential trade-off between reproduction and current survival, as suggested by effects of inbreeding on immunity, inbred females would show significantly reduced reproductive output compared with outbred females. We also examined sex-specific effects of inbreeding on mating competency, focusing specifically on the female's decision …


Adaptive Signatures In Thermal Performance Of The Temperate Coral Astrangia Poculata, H. E. Aichelman, Richard C. Zimmerman, Daniel J. Barshis Jan 2019

Adaptive Signatures In Thermal Performance Of The Temperate Coral Astrangia Poculata, H. E. Aichelman, Richard C. Zimmerman, Daniel J. Barshis

Biological Sciences Faculty Publications

Variation in environmental characteristics and divergent selection pressures can drive adaptive differentiation across a species' range. Astrangia poculata is a temperate scleractinian coral that provides unique opportunities to understand the roles of phenotypic plasticity and evolutionary adaptation in coral physiological tolerance limits. A. poculata inhabits hard bottom ecosystems from the northwestern Atlantic to the Gulf of Mexico and withstands an annual temperature range up to 20° C. Additionally, A. poculata is facultatively symbiotic and co-occurs in both symbiotic ("brown") and aposymbiotic ("white") states. Here, brown and white A. poculata were collected from Virginia (VA) and Rhode Island (RI), USA and …


Prime-Boost Vaccine Regimen For Sjtpl And Sjc23 Schistosome Vaccines, Increases Efficacy In Water Buffalo In A Field Trial In China, Akram A. Da'dara, Changlin Li, Xinling Yu, Mao Zheng, Jie Zhou, Lisa M. Shollenberger, Yue-Sheng Li, Donald A. Ham Jan 2019

Prime-Boost Vaccine Regimen For Sjtpl And Sjc23 Schistosome Vaccines, Increases Efficacy In Water Buffalo In A Field Trial In China, Akram A. Da'dara, Changlin Li, Xinling Yu, Mao Zheng, Jie Zhou, Lisa M. Shollenberger, Yue-Sheng Li, Donald A. Ham

Biological Sciences Faculty Publications

Schistosomiasis remains a serious zoonotic disease in China and the Philippines. Water buffalo and cattle account for the majority of transmission. Vaccination of water buffalo is considered a key strategy to reduce disease prevalence. Previously, we showed that vaccination of water buffalo with SjC23 or SjCTPI plasmid DNA vaccines, induced 50% efficacy to challenge infection. Here, we evaluated several parameters to determine if we can develop a two dose vaccine that maintains the efficacy of the three dose vaccine. We performed four trials evaluating: (1) lab produced vs. GLP grade vaccines, (2) varying the time between prime and boost, (3) …


Sponges Structure Water-Column Characteristics In Shallow Tropical Coastal Ecosystems, Marla M. Valentine, Mark J. Butler Iv Jan 2019

Sponges Structure Water-Column Characteristics In Shallow Tropical Coastal Ecosystems, Marla M. Valentine, Mark J. Butler Iv

Biological Sciences Faculty Publications

Sponges can have powerful effects on ecosystem processes in shallow tropical marine ecosystems. They drive benthic-pelagic coupling by filtering dissolved and particulate organic matter from the water column, alter water chemistry in association with their symbiotic microorganisms, and increase habitat structural complexity. Anthropogenic degradation of coastal waters is widespread and can reduce the density and diversity of foundation species such as sponges, potentially diminishing their contributions to ecosystem processes. We used a novel mesocosm design that minimized artifacts associated with traditional single-species and closed-system filtration experiments to examine the effects of water turnover and sponge biomass on water-column properties. Using …


Anti-C1q Autoantibodies Are Frequently Detected In Patients With Systemic Sclerosis Associated With Pulmonary Fibrosis, C. Liaskos, S. Rentouli, T. Simopoulou, A. Gkoutzourelas, G. L. Norman, A. Brotis, I. Alexiou, C. Katsiari, D. P. Bogdanos, L. I. Sakkas Jan 2019

Anti-C1q Autoantibodies Are Frequently Detected In Patients With Systemic Sclerosis Associated With Pulmonary Fibrosis, C. Liaskos, S. Rentouli, T. Simopoulou, A. Gkoutzourelas, G. L. Norman, A. Brotis, I. Alexiou, C. Katsiari, D. P. Bogdanos, L. I. Sakkas

Biological Sciences Faculty Publications

BACKGROUND: Anti-C1q autoantibodies (autoAbs) are associated with systemic lupus erythematosus (SLE) but their presence in other rheumatic diseases has not been adequately investigated.

OBJECTIVE: We aim to assessanti-C1q autoAbs and circulating immune complexes (CICs) in systemic sclerosis (SSc).

METHODS: One hundred twenty four patients with SSc (106 females; median age 59.4 years, range 25-81.4; 75(60.5%) with limited cutaneous SSc[lcSSc], and 49(39.5%) with diffuse cutaneous SSc[dcSSc]), were studied. Twenty-five patients with Sjögren's syndrome (SjS), 29 with rheumatoid arthritis (RA), and 38 patients with systemic lupus erythematosus (SLE) and 53 healthy controls (NC) were also included. ELISAs with high and low salt …


Exosomes Mediate Zika Virus Transmission Through Smpd3 Neutral Sphingomyelinase In Cortical Neurons, Wenshuo Zhou, Michael Woodson, Michael B. Sherman, Girish Neelakanta, Hameeda Sultana Jan 2019

Exosomes Mediate Zika Virus Transmission Through Smpd3 Neutral Sphingomyelinase In Cortical Neurons, Wenshuo Zhou, Michael Woodson, Michael B. Sherman, Girish Neelakanta, Hameeda Sultana

Biological Sciences Faculty Publications

The harmful effects of ZIKA virus (ZIKV) infection are reflected by severe neurological manifestations such as microcephaly in neonates and other complications associated with Guillain-Barre syndrome in adults. The transmission dynamics of ZIKV in or between neurons, or within the developing brains of the foetuses are not fully understood. Using primary cultures of murine cortical neurons, we show that ZIKV uses exosomes as mediators of viral transmission between neurons. Cryo-electron microscopy showed heterogeneous population of neuronal exosomes with a size range of 30-200 nm. Increased production of exosomes from neuronal cells was noted upon ZIKV infection. Neuronal exosomes contained both …


Habitat Saturation Results In Joint-Nesting Female Coalitions In A Social Bird, Sahas Barve, Walter D. Koenig, Joseph Haydock, Eric L. Walters Jan 2019

Habitat Saturation Results In Joint-Nesting Female Coalitions In A Social Bird, Sahas Barve, Walter D. Koenig, Joseph Haydock, Eric L. Walters

Biological Sciences Faculty Publications

Joint nesting by females and cooperative polyandry—cooperatively breeding groups with a male-biased breeder sex ratio—are little-understood, rare breeding systems. We tested alternative hypotheses of factors potentially driving these phenomena in a population of joint-nesting acorn woodpeckers (Melanerpes formicivorus). During periods of high population density and thus low independent breeding opportunities, acorn woodpecker females formed joint-nesting coalitions with close kin. Coalitions were typically associated with groups with a male bias. We found strong evidence for both inter- and intrasexual conflict, as joint nesting conferred a fitness benefit to some males, a significant fitness cost to females, and no gain in per …


Mapping Status And Conservation Of Global At-Risk Marine Biodiversity, Casey C. O'Hara, Juan Carlos Villaseñor-Derbez, Gina M. Ralph, Benjamin S. Halpern Jan 2019

Mapping Status And Conservation Of Global At-Risk Marine Biodiversity, Casey C. O'Hara, Juan Carlos Villaseñor-Derbez, Gina M. Ralph, Benjamin S. Halpern

Biological Sciences Faculty Publications

To conserve marine biodiversity, we must first understand the spatial distribution and status of at‐risk biodiversity. We combined range maps and conservation status for 5,291 marine species to map the global distribution of extinction risk of marine biodiversity. We find that for 83% of the ocean, >25% of assessed species are considered threatened, and 15% of the ocean shows >50% of assessed species threatened when weighting for range‐limited species. By comparing mean extinction risk of marine biodiversity to no‐take marine reserve placement, we identify regions where reserves preferentially afford proactive protection (i.e., preserving low‐risk areas) or reactive protection (i.e., mitigating …