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2018

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Articles 11941 - 11970 of 12524

Full-Text Articles in Life Sciences

Employing An Analytic Hierarchy Process To Prioritize Factors Influencing Surfaceroughness Of Wood And Wood-Based Materials In The Sawing Process, Hi̇lal Si̇nger, Şükrü Özşahi̇n Jan 2018

Employing An Analytic Hierarchy Process To Prioritize Factors Influencing Surfaceroughness Of Wood And Wood-Based Materials In The Sawing Process, Hi̇lal Si̇nger, Şükrü Özşahi̇n

Turkish Journal of Agriculture and Forestry

This paper focuses on the prioritization of factors having substantial effects on the surface roughness of wood and wood-based materials in the sawing process. Within the model, four main factors were defined: cutting tool properties, machining parameters, wood structure and properties, and cutting phenomena. Furthermore, each main factor was subdivided into various subfactors. The analytic hierarchy process method was proposed to obtain the priorities of the factors. The results showed that feed speed, tooth shape and geometry, and cutting speed are the most important factors. Based on the obtained results, it can be said that the most important factors can …


A Comparative Study Of Fuzzy Linear Regression And Multiple Linear Regression Inagricultural Studies: A Case Study Of Lentil Yield Management, Karim Sorkheh, Ahmad Kazemifard, Shakiba Rajabpoor Jan 2018

A Comparative Study Of Fuzzy Linear Regression And Multiple Linear Regression Inagricultural Studies: A Case Study Of Lentil Yield Management, Karim Sorkheh, Ahmad Kazemifard, Shakiba Rajabpoor

Turkish Journal of Agriculture and Forestry

This study investigates the advantages of two fuzzy linear regression (FLR) models, namely the Tanaka and the Savic and Pedrycz models, over multiple linear regression (MLR) for lentil yield management. We used a fuzzy approach to model the yield of lentil genotypes in which the input is crisp and the output fuzzy. Moreover, after finding FLR equations, we estimated the output corresponding to the collection of fuzzy inputs by using fuzzy algebraic operations and an appropriate defuzzification method known as the center of area method. Results showed the superiority of the Tanaka model over MLR because of reducing the included …


Use Of Chemical Mutagens For Production Of Inactive Pollen Grains,Embryo Rescue, And Morphological Changes In Cucumber, Faezeh Hazem, Maryam Golabadi Jan 2018

Use Of Chemical Mutagens For Production Of Inactive Pollen Grains,Embryo Rescue, And Morphological Changes In Cucumber, Faezeh Hazem, Maryam Golabadi

Turkish Journal of Agriculture and Forestry

Application of chemical mutagens as important factors is very practical for successful haploidization techniques in Cucurbitaceae through pollen grain deactivation and then immature embryo rescue. The present research investigated the effects of genotype, male flower age, receptor plant, and chemical mutagenesis (NaN3 and colchicine) on pollen grain deactivation as well as seed production (number of total, full, half-full, and empty seeds) and morphological traits. Moreover, the effects of different plant growth regulators were tested on embryo cultures. The effects of different factors (mutagen, genotype, flower age) were investigated on plant regeneration from immature embryos that were inspected from half-full and …


Oxygen Isotope Discrimination Of Wheat And Its Relationship With Yield And Stomatal Conductance Under Irrigated Conditions, Sema Kale Çeli̇k, Sevi̇nç Madenoğlu, Bülent Sönmez, Kadri̇ Avağ, Ufuk Türker, Gökhan Çayci, Ali̇ Ci̇hat Kütük, Lee Kheng Heng Jan 2018

Oxygen Isotope Discrimination Of Wheat And Its Relationship With Yield And Stomatal Conductance Under Irrigated Conditions, Sema Kale Çeli̇k, Sevi̇nç Madenoğlu, Bülent Sönmez, Kadri̇ Avağ, Ufuk Türker, Gökhan Çayci, Ali̇ Ci̇hat Kütük, Lee Kheng Heng

Turkish Journal of Agriculture and Forestry

This study was carried out to determine the different irrigation regime effects on oxygen isotope discrimination of stem water (𖗢Os) and its relationship with grain yield (GY), aboveground biomass (BM), and stomatal conductivity (gs) of winter wheat. For this purpose a field experiment was conducted between 2009 and 2011 in a semiarid region of Turkey under rainfed (RF), deficit (DI), moderate (MI), and full irrigation (FI) conditions. The highest GY and BM (4.5 t ha$^{-1}$ and 14.5 t ha$^{-1}$) were measured from the FI treatment. However, the difference between the yield of DI and FI treatments was insignificant. It might …


Impact Of Long-Lasting Insecticide-Incorporated Screens Oncolorado Potato Beetle And Plum Curculio, Ayhan Gökçe, Georgina V. Bingham, Mark E. Whalon Jan 2018

Impact Of Long-Lasting Insecticide-Incorporated Screens Oncolorado Potato Beetle And Plum Curculio, Ayhan Gökçe, Georgina V. Bingham, Mark E. Whalon

Turkish Journal of Agriculture and Forestry

The efficacy and behavior effects of long-lasting insecticide-incorporated screens (LLIS; polyolefin containing deltamethrin) were tested under laboratory conditions against two important pests (Leptinotarsa decemlineata and Conotrachelus nenuphar). Four Vestergaard ZeroFly® LLISs of different specifications were evaluated: trial batches JLCB061009, SPSA 6616, ZeroFly Greenhouse (B), and ZeroFly Greenhouse (G). Two control products were also included: ZeroFly Screen Greenhouse White with no insecticide and a standard commercial fiberglass insect screen. Contact bioassays revealed that all treated LLIS products, except JLCB061009, provided >90% mortality within 24 h of exposure for both susceptible (New Jersey, USA) and resistant (Long Island, NY, USA) L. decemlineata …


Seed Fatty Acid Compositions And Chemotaxonomy Of Wild Safflower(Carthamus L., Asteraceae) Species In Turkey, Yusuf Arslan, Burcu Tarikahya Hacioğlu Jan 2018

Seed Fatty Acid Compositions And Chemotaxonomy Of Wild Safflower(Carthamus L., Asteraceae) Species In Turkey, Yusuf Arslan, Burcu Tarikahya Hacioğlu

Turkish Journal of Agriculture and Forestry

Safflower is an important oilseed crop for the dry regions of the world. In the present study, we aimed to find out the seed oil content and composition of the wild relatives of safflower. For this purpose, 71 populations from 5 naturally growing Carthamus species were collected from Turkey: Carthamus dentatus (30 accessions), Carthamus lanatus (30 accessions), Carthamus persicus (2 accessions), Carthamus glaucus (6 accessions), and Carthamus tenuis (3 accessions). Our research covered all naturally growing safflower species in the flora of Turkey. The seeds belonging to 71 accessions were germinated in cabinets and transferred to vials in order to …


Neuroprotective Potential Of The Fruit (Acorn) From Quercus Coccifera L., Fatma Sezer Şenol, Nazim Şekeroğlu, Sevgi̇ Gezi̇ci̇, Esra Kiliç, İlkay Erdoğan Orhan Jan 2018

Neuroprotective Potential Of The Fruit (Acorn) From Quercus Coccifera L., Fatma Sezer Şenol, Nazim Şekeroğlu, Sevgi̇ Gezi̇ci̇, Esra Kiliç, İlkay Erdoğan Orhan

Turkish Journal of Agriculture and Forestry

Neurodegenerative diseases such as Alzheimer disease and Parkinson disease are among the deadly disorders affecting the elderly population. Unfortunately, effective treatments and medications are still needed to combat these diseases. The ethanol extracts of the raw peeled acorns and acorn coffees from Quercus coccifera prepared by two different methods (boiled-roasted ground and roasted ground) were tested against acetylcholinesterase (AChE), butyrylcholinesterase (BChE), and tyrosinase (TYR), the enzymes associated with neurodegeneration. The acorns used in the present study were harvested from wild Quercus coccifera L. trees in Kilis Province, located in the Eastern Mediterranean region of Turkey in November 2016. Cholinesterase (ChE) …


Growth And Yield Of Plum Trees In Response To In-Row Orchard Floor Management, Jerzy Lisek, Zbigniew Buler Jan 2018

Growth And Yield Of Plum Trees In Response To In-Row Orchard Floor Management, Jerzy Lisek, Zbigniew Buler

Turkish Journal of Agriculture and Forestry

Research was conducted in 2009-2015 on Valjevka plum trees (Prunus domestica L.) that were grafted onto Myrobalan seedlings (Prunus cerasifera Ehrh. var. divaricata Ledeb.). Trees were planted in the spring of 2008. From 2009 the following methods of soil cultivation under tree canopies were introduced: spraying with foliar herbicides; mulching with organic waste, i.e. straw with compost; mechanical soil cultivation with the use of rotary cultivators and hoe; weed mowing. On the control plots with limited weeding, the weeds growing around tree trunks were pulled several times a year. From 2010 to 2015, highest total yield of plums was produced …


Olive Tree Response To The Severity Of Pruning, Manuel Angelo Rodrigues, João Ilidio Lopes, Isabel Queiros Ferreira, Margarida Arrobas Jan 2018

Olive Tree Response To The Severity Of Pruning, Manuel Angelo Rodrigues, João Ilidio Lopes, Isabel Queiros Ferreira, Margarida Arrobas

Turkish Journal of Agriculture and Forestry

Pruning has been seen as a means of improving olive tree productivity. The presumed importance of pruning was described by Columella (born 4 AD), and has persisted in general terms to the present. In this work, the effect of different pruning regimes was assessed from two field trials conducted in Mirandela, NE Portugal, in an olive grove of cv. 'Cobrançosa', rainfed managed. The first trial began after a light crop ("off" year) and received four pruning regimes (hard, moderate, light, and nonpruned control). The second trial started the following year, after a heavy crop ("on" year), and received two pruning …


A Comparison Of Three Diagnostic Platforms For The Detection Of Influenza A And B In Children, Furqan Kabir, Marvi Tariq, Fatima Aziz, Syed Imran Rizvi, Shahida Qureshi, Syed Asad Ali, Najeeha Talat Iqbal Jan 2018

A Comparison Of Three Diagnostic Platforms For The Detection Of Influenza A And B In Children, Furqan Kabir, Marvi Tariq, Fatima Aziz, Syed Imran Rizvi, Shahida Qureshi, Syed Asad Ali, Najeeha Talat Iqbal

Department of Paediatrics and Child Health

Background: Viral flu is the predominant cause of hospitalization in young children, which invariably leads to enhanced morbidity and mortality in children in developing countries. Initial treatment of viral flu is based on presumptive diagnosis. Bedside testing is not common in clinical settings because of variable sensitivity and specificity of rapid tests in different settings.
Methods: To address this issue, we evaluated the performance of Binax influenza A/B rapid testing kit against two robust molecular platforms (quantitative real-time polymerase chain reaction [qRT-PCR] and TaqMan array card [TAC]) in 24 nasopharyngeal (NP) swabs, collected from children under 5 years of age. …


Altered Environmental Light Drives Retinal Change In The Atlantic Tarpon (Megalops Atlanticus) Over Timescales Relevant To Marine Environmental Disturbance, Lorian E. Schweikert, Michael S. Grace Jan 2018

Altered Environmental Light Drives Retinal Change In The Atlantic Tarpon (Megalops Atlanticus) Over Timescales Relevant To Marine Environmental Disturbance, Lorian E. Schweikert, Michael S. Grace

Ocean Engineering and Marine Sciences Faculty Publications

For many fish species, retinal function changes between life history stages as part of an encoded developmental program. Retinal change is also known to exhibit plasticity because retinal form and function can be influenced by light exposure over the course of development. Aside from studies of gene expression, it remains largely unknown whether retinal plasticity can provide functional responses to short-term changes in environmental light quality. The aim of this study was to determine whether the structure and function of the fish retina can change in response to altered light intensity and spectrum—not over the course of a developmental regime, …


Detection Of Inflammation Via Volatile Cues In Human Urine, Amy R. Gordon, Bruce A. Kimball, Kimmo Sorjonen, Bianka Karshikoff, John Axelsson, Mats Lekander, Johan N. Lundstrom, Mats J. Olsson Jan 2018

Detection Of Inflammation Via Volatile Cues In Human Urine, Amy R. Gordon, Bruce A. Kimball, Kimmo Sorjonen, Bianka Karshikoff, John Axelsson, Mats Lekander, Johan N. Lundstrom, Mats J. Olsson

United States Department of Agriculture Wildlife Services: Staff Publications

Contagious disease is a major threat to survival, and the cost of relying on the immune system to defeat pathogens is high; therefore, behavioral avoidance of contagious individuals is arguably an adaptive strategy. Animal findings demonstrate the ability to detect and avoid sick individuals by the aid of olfactory cues, and a recent study indicated that human axillary odor also becomes more aversive as a function of immune activation. By injecting healthy human participants with lipopolysaccharide (0.6 ng/kg body weight) to experimentally induce inflammation, this study demonstrates that natural daily rhythms of urine odor—its perceived dimensions and volatile profile—are altered …


Costs And Effectiveness Of Damage Management Of An Overabundant Species (Sus Scrofa) Using Aerial Gunning, Amy J. Davis, Bruce Leland, Michael Bodenchuk, Kurt C. Vercauteren, Kim M. Pepin Jan 2018

Costs And Effectiveness Of Damage Management Of An Overabundant Species (Sus Scrofa) Using Aerial Gunning, Amy J. Davis, Bruce Leland, Michael Bodenchuk, Kurt C. Vercauteren, Kim M. Pepin

United States Department of Agriculture Wildlife Services: Staff Publications

Context. Management of overabundant or invasive species is a constant challenge because resources for management are always limited and relationships between management costs, population density and damage costs are complex and difficult to predict. Metrics of management success are often based on simple measures, such as counts, which may not be indicative of impacts on damage reduction or cost-effectiveness under different management plans.

Aims. The aims of this study were to evaluate the effectiveness of aerial gunning for the management of wild pigs (Sus scrofa), and to evaluate how cost-effectiveness would vary under different relationships between levels of …


Sifting And Winnowing: Analysis Of Farmer Field Data For Soybean In The Us North-Central Region, Spyridon Mourtzinis, Juan I. Rattalino Edreira, Patricio Grassini, Adam C. Roth, Shaun N. Casteel, Ignacio A. Ciampitti, Hans J. Kandel, Peter M. Kyveryga, Mark A. Licht, Laura E. Lindsey, Daren S. Mueller, Emerson D. Nafziger, Seth L. Naeve, Jordan Stanley, Michael J. Staton, Shawn P. Conley Jan 2018

Sifting And Winnowing: Analysis Of Farmer Field Data For Soybean In The Us North-Central Region, Spyridon Mourtzinis, Juan I. Rattalino Edreira, Patricio Grassini, Adam C. Roth, Shaun N. Casteel, Ignacio A. Ciampitti, Hans J. Kandel, Peter M. Kyveryga, Mark A. Licht, Laura E. Lindsey, Daren S. Mueller, Emerson D. Nafziger, Seth L. Naeve, Jordan Stanley, Michael J. Staton, Shawn P. Conley

Department of Agronomy and Horticulture: Faculty Publications

Field trials are commonly used to estimate the effects of different factors on crop yields. In the present study, we followed an alternative approach to identify factors that explain field-to-field yield variation, which consisted of farmer survey data, a spatial framework, and multiple statistical procedures. This approach was used to identify management factors with strongest association with on-farm soybean yield variation in the US North Central (NC) region. Field survey data, including yield and management information, were collected over two crop growing seasons (2014 and 2015) from rainfed and irrigated soybean fields (total of 3568 field-year observations). Fields were grouped …


Genome-Wide Association Study For Identification And Validation Of Novel Snp Markers For Sr6 Stem Rust Resistance Gene In Bread Wheat, Amira M. I. Mourad, Ahmed Sallam, Vikas Belamkar, Stephen N. Wegulo, Robert Bowden, Yue Jin, Ezzat Mahdy, Bahy Bakheit, Atif A. El-Wafaa, Jesse Poland, Peter S. Baenziger Jan 2018

Genome-Wide Association Study For Identification And Validation Of Novel Snp Markers For Sr6 Stem Rust Resistance Gene In Bread Wheat, Amira M. I. Mourad, Ahmed Sallam, Vikas Belamkar, Stephen N. Wegulo, Robert Bowden, Yue Jin, Ezzat Mahdy, Bahy Bakheit, Atif A. El-Wafaa, Jesse Poland, Peter S. Baenziger

Department of Agronomy and Horticulture: Faculty Publications

Stem rust (caused by Puccinia graminis f. sp. tritici Erikss. & E. Henn.), is a major disease in wheat (Triticum aestivium L.). However, in recent years it occurs rarely in Nebraska due to weather and the effective selection and gene pyramiding of resistance genes. To understand the genetic basis of stem rust resistance in Nebraska winter wheat, we applied genome-wide association study (GWAS) on a set of 270 winter wheat genotypes (A-set). Genotyping was carried out using genotyping-by-sequencing and ~35,000 high-quality SNPs were identified. The tested genotypes were evaluated for their resistance to the common stem rust race in …


Can Bangladesh Produce Enough Cereals To Meet Future Demand?, J. Timsina, J. Wolf, N. Guilpart, L.G.J. Van Bussel, P. Grassini, J. Van Wart, A. Hossain, H. Rashid, S. Islam, M.K. Van Ittersum Jan 2018

Can Bangladesh Produce Enough Cereals To Meet Future Demand?, J. Timsina, J. Wolf, N. Guilpart, L.G.J. Van Bussel, P. Grassini, J. Van Wart, A. Hossain, H. Rashid, S. Islam, M.K. Van Ittersum

Department of Agronomy and Horticulture: Faculty Publications

Bangladesh faces huge challenges in achieving food security due to its high population, diet changes, and limited room for expanding cropland and cropping intensity. The objective of this study is to assess the degree to which Bangladesh can be self-sufficient in terms of domestic maize, rice and wheat production by the years 2030 and 2050 by closing the existing gap (Yg) between yield potential (Yp) and actual farm yield (Ya), accounting for possible changes in cropland area. Yield potential and yield gaps were calculated for the three crops using well-validated crop models and site-specific weather,management and soil data, and upscaled …


Doublethink And Scale Mismatch Polarize Policies For An Invasive Tree, Caleb P. Roberts, Daniel R. Uden, Craig R. Allen, Dirac L. Twidwell Jr. Jan 2018

Doublethink And Scale Mismatch Polarize Policies For An Invasive Tree, Caleb P. Roberts, Daniel R. Uden, Craig R. Allen, Dirac L. Twidwell Jr.

Department of Agronomy and Horticulture: Faculty Publications

Mismatches between invasive species management policies and ecological knowledge can lead to profound societal consequences. For this reason, natural resource agencies have adopted the scientifically-based density-impact invasive species curve to guide invasive species management. We use the density-impact model to evaluate how well management policies for a native invader (Juniperus virginiana) match scientific guidelines. Juniperus virginiana invasion is causing a sub-continental regime shift from grasslands to woodlands in central North America, and its impacts span collapses in endemic diversity, heightened wildfire risk, and crashes in grazing land profitability. We (1) use land cover data to identify the stage …


Managing Grazing Lands To Improve Soils And Promote Climate Change Adaptation And Mitigation: A Global Synthesis, Marcia Delonge, Andrea D. Basche Jan 2018

Managing Grazing Lands To Improve Soils And Promote Climate Change Adaptation And Mitigation: A Global Synthesis, Marcia Delonge, Andrea D. Basche

Department of Agronomy and Horticulture: Faculty Publications

The potential to improve soils to help farmers and ranchers adapt to and mitigate climate change has generated significant enthusiasm. Within this discussion, grasslands have surfaced as being particularly important, due to their geographic range, their capacity to store substantial quantities of carbon relative to cultivated croplands and their potential role in mitigating droughts and floods. However, leveraging grasslands for climate change mitigation and adaptation will require a better understanding of how farmers and ranchers who rely on them for their livelihoods can improve management and related outcomes. To investigate opportunities for such improvements, we conducted a meta-analysis of field …


Quantifying Variance Across Spatial Scales As Part Of Fire Regime Classifications, Rheinhardt Scholtz, Samuel D. Fuhlendorf, Sherry A. Leis, Joshua J. Picotte, Dirac L. Twidwell Jr Jan 2018

Quantifying Variance Across Spatial Scales As Part Of Fire Regime Classifications, Rheinhardt Scholtz, Samuel D. Fuhlendorf, Sherry A. Leis, Joshua J. Picotte, Dirac L. Twidwell Jr

Department of Agronomy and Horticulture: Faculty Publications

The emergence of large-scale fire classifications and products informed by remote sensing data has enabled opportunities to include variability or heterogeneity as part of modern fire regime classifications. Currently, basic fire metrics such as mean fire return intervals are calculated without considering spatial variance in a management context. Fire return intervals are also only applicable at a particular grain size (defined as the spatial unit of interest) even though they are typically applied homogeneously. In this study, we utilized a 29-yr fire occurrence database to show how spatial variance changes with respect to grain as postulated by Wiens (1989) when …


Social–Ecological Landscape Patterns Predict Woody Encroachment From Native Tree Plantings In A Temperate Grassland, Victoria M. Donovan, Jessica L. Burnett, Christine H. Bielski, Hannah E. Birge, Rebecca Bevans, Dirac L. Twidwell Jr, Craig R. Allen Jan 2018

Social–Ecological Landscape Patterns Predict Woody Encroachment From Native Tree Plantings In A Temperate Grassland, Victoria M. Donovan, Jessica L. Burnett, Christine H. Bielski, Hannah E. Birge, Rebecca Bevans, Dirac L. Twidwell Jr, Craig R. Allen

Department of Agronomy and Horticulture: Faculty Publications

Afforestation is often viewed as the purposeful planting of trees in historically non-forested grasslands, but an unintended consequence is woody encroachment, which should be considered part of the afforestation process. In North America’s temperate grassland biome, Eastern redcedar (Juniperus virginiana L.) is a native species used in tree plantings that aggressively invades in the absence of controlling processes. Cedar is a well-studied woody encroacher, but little is known about the degree to which cedar windbreaks, which are advocated for in agroforestry programs, are contributing to woody encroachment, what factors are associated with cedar spread from windbreaks, nor where encroachment …


Optimising The Identification Of Causal Variants Across Varying Genetic Architectures In Crops, Chenyong Miao, Jinliang Yang, James C. Schnable Jan 2018

Optimising The Identification Of Causal Variants Across Varying Genetic Architectures In Crops, Chenyong Miao, Jinliang Yang, James C. Schnable

Department of Agronomy and Horticulture: Faculty Publications

Association studies use statistical links between genetic markers and the phenotype variation across many individuals to identify genes controlling variation in the target phenotype. However, this approach, particularly conducted on a genome-wide scale (GWAS), has limited power to identify the genes responsible for variation in traits controlled by complex genetic architectures. In this study, we employ real-world genotype datasets from four crop species with distinct minor allele frequency distributions, population structures and linkage disequilibrium patterns. We demonstrate that different GWAS statistical approaches provide favourable trade-offs between power and accuracy for traits controlled by different types of genetic architectures. FarmCPU provides …


Maize Genomes To Fields: 2014 And 2015 Field Season Genotype, Phenotype, Environment, And Inbred Ear Image Datasets, Naser Alkhalifah, Darwin A. Campbell, Celeste M. Falcon, Jack M. Gardiner, Nathan D. Miller, Maria Cinta Romay, Ramona Walls, Renee Walton, Cheng-Ting Yeh, Martin Bohn, Jessica Bubert, Edward S. Buckler, Ignacio Ciampitti, Sherry Flint-Garcia, Michael A. Gore, Christopher Graham, Candice Hirsch, James B. Holland, David Hooker, Shawn Kaeppler, Joseph Knoll, Nick Lauter, Elizabeth C. Lee, Aaron Lorenz, Jonathan P. Lynch, Stephen P. Moose, Seth C. Murray, Rebecca Nelson, Torbert Rocheford, Oscar Rodriguez, James C. Schnable, Brian Scully, Margaret Smith, Nathan Springer, Peter Thomison, Mitchell Tuinstra, Randall J. Wisser, Wenwei Xu, David Ertl, Patrick S. Schnable, Natalia De Leon, Edgar P. Spalding, Jode Edwards, Carolyn J. Lawrence-Dill Jan 2018

Maize Genomes To Fields: 2014 And 2015 Field Season Genotype, Phenotype, Environment, And Inbred Ear Image Datasets, Naser Alkhalifah, Darwin A. Campbell, Celeste M. Falcon, Jack M. Gardiner, Nathan D. Miller, Maria Cinta Romay, Ramona Walls, Renee Walton, Cheng-Ting Yeh, Martin Bohn, Jessica Bubert, Edward S. Buckler, Ignacio Ciampitti, Sherry Flint-Garcia, Michael A. Gore, Christopher Graham, Candice Hirsch, James B. Holland, David Hooker, Shawn Kaeppler, Joseph Knoll, Nick Lauter, Elizabeth C. Lee, Aaron Lorenz, Jonathan P. Lynch, Stephen P. Moose, Seth C. Murray, Rebecca Nelson, Torbert Rocheford, Oscar Rodriguez, James C. Schnable, Brian Scully, Margaret Smith, Nathan Springer, Peter Thomison, Mitchell Tuinstra, Randall J. Wisser, Wenwei Xu, David Ertl, Patrick S. Schnable, Natalia De Leon, Edgar P. Spalding, Jode Edwards, Carolyn J. Lawrence-Dill

Department of Agronomy and Horticulture: Faculty Publications

Objectives: Crop improvement relies on analysis of phenotypic, genotypic, and environmental data. Given large, well-integrated, multi-year datasets, diverse queries can be made: Which lines perform best in hot, dry environments? Which alleles of specific genes are required for optimal performance in each environment? Such datasets also can be leveraged to predict cultivar performance, even in uncharacterized environments. The maize Genomes to Fields (G2F) Initiative is a multi-institutional organization of scientists working to generate and analyze such datasets from existing, publicly available inbred lines and hybrids. G2F’s genotype by environment project has released 2014 and 2015 datasets to the public, with …


Phosphate Deficiency Negatively Affects Early Steps Of The Symbiosis Between Common Bean And Rhizobia, Mariel C. Isidra-Arellano, Maria Del Rocio Reyero-Saavedra, Maria Del Socorro Sanchez-Correa, Lise Pingault, Sidharth Sen, Trupti Joshi, Lourdes Girard, Norma A. Castro-Guerrero, David G. Mendoza-Cozatl, Marc Libault, Oswaldo Valdes-Lopez Jan 2018

Phosphate Deficiency Negatively Affects Early Steps Of The Symbiosis Between Common Bean And Rhizobia, Mariel C. Isidra-Arellano, Maria Del Rocio Reyero-Saavedra, Maria Del Socorro Sanchez-Correa, Lise Pingault, Sidharth Sen, Trupti Joshi, Lourdes Girard, Norma A. Castro-Guerrero, David G. Mendoza-Cozatl, Marc Libault, Oswaldo Valdes-Lopez

Department of Agronomy and Horticulture: Faculty Publications

Phosphate (Pi) deficiency reduces nodule formation and development in different legume species including common bean. Despite significant progress in the understanding of the genetic responses underlying the adaptation of nodules to Pi deficiency, it is still unclear whether this nutritional deficiency interferes with the molecular dialogue between legumes and rhizobia. If so, what part of the molecular dialogue is impaired? In this study, we provide evidence demonstrating that Pi deficiency negatively affects critical early molecular and physiological responses that are required for a successful symbiosis between common bean and rhizobia. We demonstrated that the infection thread formation and the expression …


Intragenic Meiotic Crossovers Generate Novel Alleles With Transgressive Expression Levels, Sanzhen Liu, James C. Schnable, Alina Ott, Cheng-Ting Yeh, Nathan M. Springer, Jianming Yu, Gary Muehlbauer, Marja C. P. Timmermans, Michael J. Scanlon, Patrick S. Schnable Jan 2018

Intragenic Meiotic Crossovers Generate Novel Alleles With Transgressive Expression Levels, Sanzhen Liu, James C. Schnable, Alina Ott, Cheng-Ting Yeh, Nathan M. Springer, Jianming Yu, Gary Muehlbauer, Marja C. P. Timmermans, Michael J. Scanlon, Patrick S. Schnable

Department of Agronomy and Horticulture: Faculty Publications

Meiotic recombination is an evolutionary force that generates new genetic diversity upon which selection can act. Whereas multiple studies have assessed genome-wide patterns of recombination and specific cases of intragenic recombination, few studies have assessed intragenic recombination genome-wide in higher eukaryotes. We identified recombination events within or near genes in a population of maize recombinant inbred lines (RILs) using RNA-sequencing data. Our results are consistent with case studies that have shown that intragenic crossovers cluster at the 5' ends of some genes. Further, we identified cases of intragenic crossovers that generate transgressive transcript accumulation patterns, that is, recombinant alleles displayed …


Genome-Wide Association Study Reveals Novel Genomic Regions For Grain Yield And Yield-Related Traits In Drought-Stressed Synthetic Hexaploid Wheat, Madhav Bhatta, Alexey Morgounov, Vikas Belamkar, P. Stephen Baenziger Jan 2018

Genome-Wide Association Study Reveals Novel Genomic Regions For Grain Yield And Yield-Related Traits In Drought-Stressed Synthetic Hexaploid Wheat, Madhav Bhatta, Alexey Morgounov, Vikas Belamkar, P. Stephen Baenziger

Department of Agronomy and Horticulture: Faculty Publications

Synthetic hexaploid wheat (SHW; 2n = 6x = 42, AABBDD, Triticum aestivum L.) is produced from an interspecific cross between durum wheat (2n = 4x = 28, AABB, T. turgidum L.) and goat grass (2n = 2x = 14, DD, Aegilops tauschii Coss.) and is reported to have significant novel alleles-controlling biotic and abiotic stresses resistance. A genome-wide association study (GWAS) was conducted to unravel these loci [marker–trait associations (MTAs)] using 35,648 genotyping-by-sequencing-derived single nucleotide polymorphisms in 123 SHWs. We identified 90 novel MTAs (45, 11, and 34 on the A, B, and D …


Wheat Height Estimation Using Lidar In Comparison To Ultrasonic Sensor And Uas, Wenan Yuan, Jiating Li, Madhav Bhatta, Yeyin Shi, P. Stephen Baenziger, Yufeng Ge Jan 2018

Wheat Height Estimation Using Lidar In Comparison To Ultrasonic Sensor And Uas, Wenan Yuan, Jiating Li, Madhav Bhatta, Yeyin Shi, P. Stephen Baenziger, Yufeng Ge

Department of Agronomy and Horticulture: Faculty Publications

As one of the key crop traits, plant height is traditionally evaluated manually, which can be slow, laborious and prone to error. Rapid development of remote and proximal sensing technologies in recent years allows plant height to be estimated in more objective and efficient fashions, while research regarding direct comparisons between different height measurement methods seems to be lagging. In this study, a ground-based multi-sensor phenotyping system equipped with ultrasonic sensors and light detection and ranging (LiDAR) was developed. Canopy heights of 100 wheat plots were estimated five times during a season by the ground phenotyping system and an unmanned …


Improving Fertilizer Recommendations For Nepalese Farmers With The Help Of Soil-Testing Mobile Van, Sunil Pandey, Netra Prasad Bhatta, Prakash Paudel, Rajan Pariyar, Kiran Hari Maskey, Janardan Khadka, Tuk Bahadur Thapa, Balaram Rijal, Dinesh Panday Jan 2018

Improving Fertilizer Recommendations For Nepalese Farmers With The Help Of Soil-Testing Mobile Van, Sunil Pandey, Netra Prasad Bhatta, Prakash Paudel, Rajan Pariyar, Kiran Hari Maskey, Janardan Khadka, Tuk Bahadur Thapa, Balaram Rijal, Dinesh Panday

Department of Agronomy and Horticulture: Faculty Publications

Smallholder farmers dominate agriculture in Nepal. These farmers have poor knowledge about agriculture and lack of support for soil management and integrated plant-nutrient systems. Focusing on the importance and need for soil-fertility management, a soil-testing mobile van program has recently been introduced in Nepal by Soil Management Directorate, Hariharbhawan. With the introduction of the mobile lab, famers can get their soil tested for nutrient deficiencies and fertilizer requirements at their doorsteps. Using mobile lab, spatial distributions of chemical properties, including pH, organic matter (OM), total nitrogen (N), available phosphorus (as P2O5), and available potassium (as K …


Is Conservation Agriculture A Potential Option For Cereal-Based Sustainable Farming System In The Eastern Indo-Gangetic Plains Of Nepal?, Dipendra Pokharel, Raj Kant Jha, Thakur Prasad Tiwari, Mahesh Kumar Gathala, Hari Krishna Shrestha, Dinesh Panday Jan 2018

Is Conservation Agriculture A Potential Option For Cereal-Based Sustainable Farming System In The Eastern Indo-Gangetic Plains Of Nepal?, Dipendra Pokharel, Raj Kant Jha, Thakur Prasad Tiwari, Mahesh Kumar Gathala, Hari Krishna Shrestha, Dinesh Panday

Department of Agronomy and Horticulture: Faculty Publications

A decline in land and water productivity, increase in the cost of cultivation, and labor-intensive practices are affecting the cereal-based farming system in Nepal, particularly in the Indo-Gangetic Plains (IGP). Conservation agriculture (CA) practices have been found to be the climate-, energy-, and labor-smart and sustainable agricultural production technologies. Sustainable and Resilient Farming System Intensification (SRFSI) has been working since 2014 in response to the sustainability of the cereal-based (rice–wheat and rice–maize) farming in Sunsari and Dhanusha districts of Nepal. This study was conducted to assess the adoption and scaling up of CA in addition to input usage, production, net …


Improving An Active-Optical Reflectance Sensor Algorithm Using Soil And Weather Information, G. M. Bean, N. R. Kitchen, J. J. Camberato, R. B. Ferguson, F. G. Fernandez, D. W. Franzen, C. A. M. Laboski, E. D. Nafziger, J. E. Sawyer, P. C. Scharf, J. Schepers, J. S. Shanahan Jan 2018

Improving An Active-Optical Reflectance Sensor Algorithm Using Soil And Weather Information, G. M. Bean, N. R. Kitchen, J. J. Camberato, R. B. Ferguson, F. G. Fernandez, D. W. Franzen, C. A. M. Laboski, E. D. Nafziger, J. E. Sawyer, P. C. Scharf, J. Schepers, J. S. Shanahan

Department of Agronomy and Horticulture: Faculty Publications

Active-optical reflectance sensors (AORS) use light reflectance characteristics from a crop canopy as an indicator of the plant’s N health. However, studies have shown AORS algorithms used in conjunction with measured reflectance characteristics for corn (Zea mays L.) N fertilizer rate recommendations are not consistently accurate. Our objective was to determine if soil and weather information could be utilized with an AORS algorithm developed at the University of Missouri (ALGMU) to improve in-season (~V9 corn development stage) N fertilizer recommendations. Nitrogen response trials were conducted across eight states over three growing seasons, totaling 49 sites with soils …


Water Productivity Of Rainfed Maize And Wheat: A Local To Global Perspective, Juan I. Rattalino Edreira, Nicolas Guilpart, Victor Sadras, Kenneth G. Cassman, Martin K. Van Ittersum, Rene L.M. Schils, Patricio Grassini Jan 2018

Water Productivity Of Rainfed Maize And Wheat: A Local To Global Perspective, Juan I. Rattalino Edreira, Nicolas Guilpart, Victor Sadras, Kenneth G. Cassman, Martin K. Van Ittersum, Rene L.M. Schils, Patricio Grassini

Department of Agronomy and Horticulture: Faculty Publications

Water productivity (WP) is a robust benchmark for crop production in relation to available water supply across spatial scales. Quantifying water-limited potential (WPw) and actual on-farm (WPa) WP to estimate WP gaps is an essential first step to identify the most sensitive factors influencing production capacity with limited water supply. This study combines local weather, soil, and agronomic data, and crop modeling in a spatial framework to determine WPw and WPa at local and regional levels for rainfed cropping systems in 17 (maize) and 18 (wheat) major grain-producing countries representing a wide range of cropping systems, from intensive, highyield maize …