Open Access. Powered by Scholars. Published by Universities.®

Life Sciences Commons™

Open Access. Powered by Scholars. Published by Universities.®

2016

Discipline
Institution
Keyword
Publication
Publication Type
File Type

Articles 9871 - 9900 of 10289

Full-Text Articles in Life Sciences

The Effects Of Phosphorus Addition On Phytoavailability Of Zinc By Diffusive Gradientsin Thin Films (Dgt), Osman Sönmez, Gary Pierzynski, Cengi̇z Kaya, Sali̇h Aydemi̇r Jan 2016

The Effects Of Phosphorus Addition On Phytoavailability Of Zinc By Diffusive Gradientsin Thin Films (Dgt), Osman Sönmez, Gary Pierzynski, Cengi̇z Kaya, Sali̇h Aydemi̇r

Turkish Journal of Agriculture and Forestry

Diffusive gradients in thin films (DGT) have been used for the assessment of Zn phytoavailability. Phosphorus is of particular interest in soils having Zn toxicity because of the Zn-P interaction. A greenhouse study was carried out to assess the influence of different P rates on the Zn phytoavailability to sorghum-Sudan grass (Sorghum vulgare var. Sudanese) in soil systems by DGT. Soil was amended with ZnSO4 at 0, 150, 300, 600, and 1200 mg Zn kg-1 in order to create various levels of Zn phytoavailability. Phosphorus was applied to soil at 0, 100, and 200 mg P kg-1 as KH2PO4. Plant …


Needle Characteristics Of Lebanon Cedar (Cedrus Libani A.Rich.): Degradation Of Epicuticular Waxes And Decrease Of Photosynthetic Rates With Increasing Needle Age, Ayli̇n Güney, Reiner Zimmermann, Anna Krupp, Klaus Haas Jan 2016

Needle Characteristics Of Lebanon Cedar (Cedrus Libani A.Rich.): Degradation Of Epicuticular Waxes And Decrease Of Photosynthetic Rates With Increasing Needle Age, Ayli̇n Güney, Reiner Zimmermann, Anna Krupp, Klaus Haas

Turkish Journal of Agriculture and Forestry

The evergreen conifer Cedrus libani A.Rich. İs frost- and drought-tolerant and of economic and ecological importance. It has valuable timber and thus has promising potential for cultivation within and outside its natural distribution. Our aim was to determine the morphological and physiological characteristics of C. Libani needle leaves with respect to epicuticular waxes, photosynthetic assimilation rates, and needle age. The study was conducted in the Cedar Research Forest near Elmalı, Antalya (SW Turkey) at 1650 m a.s.l. An equation to calculate needle surface area from needle length was created (R2 = 0.96) for adult cedar needles. The form factor for …


Influence Of Nacl-Salinity On Pb-Uptake Behavior And Growth Of River Red Gum Tree (Eucalyptus Camaldulensis Dehnh.), Muhammad Farrakh Nawaz, Sadaf Gul, Muhammad Ayyoub Tanvir, Javaid Akhtar, Samira Chaudary, Irfan Ahmad Jan 2016

Influence Of Nacl-Salinity On Pb-Uptake Behavior And Growth Of River Red Gum Tree (Eucalyptus Camaldulensis Dehnh.), Muhammad Farrakh Nawaz, Sadaf Gul, Muhammad Ayyoub Tanvir, Javaid Akhtar, Samira Chaudary, Irfan Ahmad

Turkish Journal of Agriculture and Forestry

Lead (Pb) is one of the most toxic and persistent elements, with no known biological role. High concentrations of lead enter saline soils through anthropogenic activities and industrial waste. The decontamination of Pb polluted sites through phytoremediation, especially by using woody plants, is an attractive approach. Eucalyptus camaldulensis is a good accumulator of Pb and a recommended tree species for reclamation of saline soils. However, there is very limited knowledge about the Pb-uptake behavior of Eucalyptus camaldulensis under saline conditions. The objective of this study was to examine the simultaneous impact of NaCl salinity and Pb stress on the phytoremedial …


Combined Effects Of Oxalic Acid Treatment And Modified Atmosphere Packaging On Postharvest Quality Of Loquats During Storage, Ayşe Tüli̇n Öz, Nesi̇be Ebru Kafkas, Adnan Bozdoğan Jan 2016

Combined Effects Of Oxalic Acid Treatment And Modified Atmosphere Packaging On Postharvest Quality Of Loquats During Storage, Ayşe Tüli̇n Öz, Nesi̇be Ebru Kafkas, Adnan Bozdoğan

Turkish Journal of Agriculture and Forestry

Effectiveness of two different (3 mM and 6 mM) concentrations of oxalic acid (OA) application in combination with modified atmosphere packaging (MAP) on skin browning, fruit skin color (L*, a*, b*) values, fruit flesh firmness, total soluble solids (TSS), titratable acidity (TA), ratio of TSS/TA, pH total phenolic content (TPC), total flavonoid content (TFC), organic acids and soluble sugars, and percentage of O2/CO2 change in Hafif Çukurgöbek loquats stored at 5 °C for 30 days were evaluated. Findings indicated that skin browning was reduced by pre-storage OA application in loquats. Furthermore, OA treatment produced the promising effects of inhibiting increases …


Molecular Markers To Evaluate Genetic Diversity Among Venturia Inaequalis Isolates Obtained From Apple Plantations In Isparta Province, Suat Kaymak, Nuh Boyraz, Jon Daniels Jan 2016

Molecular Markers To Evaluate Genetic Diversity Among Venturia Inaequalis Isolates Obtained From Apple Plantations In Isparta Province, Suat Kaymak, Nuh Boyraz, Jon Daniels

Turkish Journal of Agriculture and Forestry

Turkey, the third leading apple producer in world, produces approximately 2.6 million tons of apples per year. Venturia inaequalis, the causal agent of apple scab, is a major fungal disease among apples varieties. This study was conducted in accordance with the plant protection method for isolates collected from the apple production areas in Isparta Province. The purpose of this study was to determine genetic differences among V. inequalis isolates causing apple scab, and to discriminate the effects of varieties and geographical origins on genetic diversity. For this purpose, a total of 83 samples from the leaves and fruits of infected …


A Web-Based Decision Support System To Select Proper Machinery Size And Tractor Power, Çağdaş Ci̇velek, Sai̇t Muharrem Say Jan 2016

A Web-Based Decision Support System To Select Proper Machinery Size And Tractor Power, Çağdaş Ci̇velek, Sai̇t Muharrem Say

Turkish Journal of Agriculture and Forestry

One of the most important key factors for efficient and profitable agricultural production is agricultural mechanization. Since agricultural mechanization system expenses are nearly 30% of an agricultural enterprise investment, the mechanization system should be planned very carefully. Since internet technologies have spread into all areas, including agriculture, a web-based decision support system (DSS) was developed to plan an agricultural machinery system to be used in Turkey's farm enterprises. The developed DSS was written in PHP and the databases were created using the MySQL database administration system. Several tables to select proper machine size and tractor power, including tractor test report …


Genetic Variation And Interrelationships Among Antioxidant, Quality, And Agronomic Traits In Vegetable Amaranth, Umakanta Sarker, Md. Tofazzal Islam, Md. Golam Rabbani, Shinya Oba Jan 2016

Genetic Variation And Interrelationships Among Antioxidant, Quality, And Agronomic Traits In Vegetable Amaranth, Umakanta Sarker, Md. Tofazzal Islam, Md. Golam Rabbani, Shinya Oba

Turkish Journal of Agriculture and Forestry

This investigation was aimed to evaluate 22 promising vegetable amaranth genotypes for antioxidant, leaf quality, and agronomic traits for two test seasons. The experiment was conducted to study the degree of genetic parameters, associations among different traits, and their contribution towards foliage yield. The analysis of variance for twelve traits was found highly significant. High mean, high range of variability, and high genotypic variance were observed for all the traits except content of Ca, protein, and carotenoid. Close differences between genotypic and phenotypic variances and genotypic and phenotypic coefficients of variation were observed for all the traits. High to moderate …


Antioxidant Potential Of Turkish Pepper (Capsicum Annuum L.) Genotypes At Two Different Maturity Stages, Davut Keleş, Şenay Özgen, Onur Saraçoğlu, Ati̇lla Ata, Mustafa Özgen Jan 2016

Antioxidant Potential Of Turkish Pepper (Capsicum Annuum L.) Genotypes At Two Different Maturity Stages, Davut Keleş, Şenay Özgen, Onur Saraçoğlu, Ati̇lla Ata, Mustafa Özgen

Turkish Journal of Agriculture and Forestry

Improved phytochemicals and antioxidant properties in crops are becoming important traits in many breeding programs. In this study, along with several other horticultural attributes, total phenolic content (TP) and antioxidant capacity (ferric reducing ability of plasma (FRAP) and Trolox equivalent antioxidant capacity (TEAC)) of 52 superior pepper genotypes from the Alata Pepper Breeding Program were examined. The fruits from these plants were harvested at immature and mature stages. The genotypes greatly varied for TP, FRAP, TEAC, soluble solids, vitamin C content, and fruit color as determined by L, a and b values. The range for TP was 319-4047 µg GAE/g …


Variations In Floral Characteristics And Scent Composition And The Breeding Potential In Seed-Derived Oil-Bearing Roses (Rosa Damascena Mill.), Hasan Baydar, Sabri̇ Erbaş, Soner Kazaz Jan 2016

Variations In Floral Characteristics And Scent Composition And The Breeding Potential In Seed-Derived Oil-Bearing Roses (Rosa Damascena Mill.), Hasan Baydar, Sabri̇ Erbaş, Soner Kazaz

Turkish Journal of Agriculture and Forestry

Oil-bearing rose (Rosa damascena Mill.) is one of the most strongly scented rose species used in the perfumery and cosmetics industries. This research ultimately aimed to reveal the variation in and evaluate the breeding potential of plants whose seeds were derived from R. damascena, which has only been propagated vegetatively for centuries. The seeds extracted from the mature fruits of open-pollinated plants were stratified at 4 °C for 3 months and sown into vials. Seedlings in pots were grown under greenhouse conditions, and a total of 83 seed-derived plants were finally planted in the experimental field. The 3-year-old progenies were …


Molecular Characterization Of Genetic Variability And Structure Of Olive(Olea Europaea L.) Germplasm Collection Analyzed By Agromorphologicaltraits And Microsatellite Markers, Karim Sorkheh, Esmaeil Khaleghi Jan 2016

Molecular Characterization Of Genetic Variability And Structure Of Olive(Olea Europaea L.) Germplasm Collection Analyzed By Agromorphologicaltraits And Microsatellite Markers, Karim Sorkheh, Esmaeil Khaleghi

Turkish Journal of Agriculture and Forestry

We studied 200 trees belonging to 20 accessions of cultivated olive (O. europaea L.) from 4 regions of origin, evaluated by means of agromorphological traits and simple sequence repeat (SSR) markers. The agromorphological traits showed high variation between genotypes and significant correlation coefficients were obtained among the values recorded in two consecutive years, 2013 and 2014. The maximum coefficient of variation for the quantitative agronomic traits was observed in fruit weight wet (13.45%), while the lowest was found in stone width (3.18%). Fruit shape index, leaf length, leaf width, and lenticel size also showed variability. With both DNA-based and agromorphological …


Short-Term Effects Of Warming Treatment And Precipitation Manipulation On The Ecophysiological Responses Of Pinus Densiflora Seedlings, Soon Jin Yun, Saerom Han, Seung Hyun Han, Seongjun Kim, Guanlin Li, Minji Park, Yowhan Son Jan 2016

Short-Term Effects Of Warming Treatment And Precipitation Manipulation On The Ecophysiological Responses Of Pinus Densiflora Seedlings, Soon Jin Yun, Saerom Han, Seung Hyun Han, Seongjun Kim, Guanlin Li, Minji Park, Yowhan Son

Turkish Journal of Agriculture and Forestry

The aim of this study was to investigate the short-term effects of warming treatment and precipitation manipulation on the growth, photosynthetic rate, and chlorophyll content of Pinus densiflora seedlings based on a climate change scenario in Korea. Two-year-old P. densiflora seedlings were planted in a nursery in April 2013. The air temperature of warmed plots (W) was set to increase by 3 °C compared to control plots (C) using an infrared heater in May 2013. The three precipitation manipulations consisted of decreased precipitation using transparent panels (-30%; P-), increased precipitation using pumps and drip irrigation (+30%; P+), and a control …


Quality Traits Of Green Plums (Prunus Cerasifera Ehrh.) At Different Maturity Stages, Mehmet Ali̇ Saridaş, Nesi̇be Ebru Kafkas, Mozgan Zarifikhosroshahi, Onur Bozhaydar, Sevgi̇ Paydaş Kargi Jan 2016

Quality Traits Of Green Plums (Prunus Cerasifera Ehrh.) At Different Maturity Stages, Mehmet Ali̇ Saridaş, Nesi̇be Ebru Kafkas, Mozgan Zarifikhosroshahi, Onur Bozhaydar, Sevgi̇ Paydaş Kargi

Turkish Journal of Agriculture and Forestry

Fruits of 2 different plum cultivars (Prunus cerasifera Ehrh.) were collected in 2015 from 15-year-old trees in Hatay Province, Turkey. The 2 plum cultivars (Can and Gül) were on their own roots. Fruits were picked 5 times (both Can and Gül) at 12-day intervals (12 April [t1], 24 April [t2], 6 May [t3], 18 May [t4], and 30 May [t5]) during maturation in 2015. Higher levels of health-promoting components with the capacity to prevent several diseases, such as phenolic compounds with antioxidant activity, were found in the Can fruits, whereas the Gül fruits were characterized by lower values. The amounts …


Identification Of Olive Cultivars Using Image Processing Techniques, Abdullah Beyaz, Ramazan Öztürk Jan 2016

Identification Of Olive Cultivars Using Image Processing Techniques, Abdullah Beyaz, Ramazan Öztürk

Turkish Journal of Agriculture and Forestry

As a country in an olive production zone, olive (Olea europaea L.) production is of great economic importance for Turkey. Turkey has 88 domestic and 28 foreign cultivars of olive, all of which are located in the Kemalpaşa Production and Research Garden (Olive Gene Bank) at the Olive Research Station in İzmir (38°25'34.7628''N, 27°25'22.9872''E). The aim of this study was the identification of olive cultivars using image processing techniques. For this aim, images of olives, taken at 2896 x 1944 pixel and 300 dpi resolution, were captured using a DSLR camera, and evaluations of pixels were used for considering the …


Diversity Pattern Among Agromorphological Traits Of The Swiss Chard(Beta Vulgaris L. Subsp. Vulgaris) Genetic Resources Of Turkey, Mehmet Kadri̇ Bozokalfa, Dursun Eşi̇yok, Tansel Kaygisiz Aşçioğul Jan 2016

Diversity Pattern Among Agromorphological Traits Of The Swiss Chard(Beta Vulgaris L. Subsp. Vulgaris) Genetic Resources Of Turkey, Mehmet Kadri̇ Bozokalfa, Dursun Eşi̇yok, Tansel Kaygisiz Aşçioğul

Turkish Journal of Agriculture and Forestry

Swiss chard (Beta vulgaris L. subsp. vulgaris) is a nutritionally rich leafy vegetable of moderate economic value. Despite being the first species among the genus Beta to be cultivated, knowledge regarding its biodiversity and agronomic and morphological properties is limited. The objective of this study was to evaluate the agromorphological characteristics of the Turkish Swiss chard genetic resources, and to determine their genetic relationships and diversity. To achieve this, a total of 52 Swiss chard accessions from a wide range of environmental and geographical origins in Turkey and two cultivars (one local and one foreign) were investigated. Fourteen qualitative and …


Strain Identification And Sequence Variability Of Plum Pox Virus In Turkey, Kahraman Gürcan, Ahmet Ceylan Jan 2016

Strain Identification And Sequence Variability Of Plum Pox Virus In Turkey, Kahraman Gürcan, Ahmet Ceylan

Turkish Journal of Agriculture and Forestry

Plum pox virus (PPV) is the causal agent of sharka disease of stone fruit trees. Since the late 1960s, PPV infection has been reported in different regions of Turkey. In this study, we aim to discover PPV strains in infected regions and determine its genetic variability in Turkey. For this reason, 612 samples were collected from distant locations, where PPV was previously detected in most cases. First, PPV presence in the samples was tested with serological and molecular methods to confirm the disease. Then 314 positive samples were sequence analyzed at a 664-nucleotide length, including the P3-6K1 gene region, one …


Cadmium Contents Of Soils And Durum And Bread Wheats On Harran Plain, Southeast Turkey, Asuman Yanardağ, Ahmet Ruhi Mermut, Angel Faz Cano, Dora Maria Carmona Garces, İbrahi̇m Hali̇l Yanardağ Jan 2016

Cadmium Contents Of Soils And Durum And Bread Wheats On Harran Plain, Southeast Turkey, Asuman Yanardağ, Ahmet Ruhi Mermut, Angel Faz Cano, Dora Maria Carmona Garces, İbrahi̇m Hali̇l Yanardağ

Turkish Journal of Agriculture and Forestry

Durum wheat (Triticum turgidum durum (Desf.) Husn.) is produced on a large scale in Turkey, northern Syria, Kazakhstan, Iran, southern Europe, and North America, and is widely used for making spaghetti, noodles, couscous, and flatbreads. Uptake of Cd by durum wheat species is well known. The objectives of this study were to determine the cadmium (Cd) level of the soils and durum and bread wheat grown on Harran Plain, southeast Turkey, and evaluate it in terms of food safety. Soil samples were taken from 16 selected grains, leaves, and roots of durum and bread wheats for analyses. The total Cd …


Bread Wheat Responds Salt Stress Better Than Einkorn Wheat Does During Germination, Di̇dem Aslan, Nusret Zenci̇rci̇, Murat Etöz, Bülent Ordu, Sara Bataw Jan 2016

Bread Wheat Responds Salt Stress Better Than Einkorn Wheat Does During Germination, Di̇dem Aslan, Nusret Zenci̇rci̇, Murat Etöz, Bülent Ordu, Sara Bataw

Turkish Journal of Agriculture and Forestry

Salt stress during germination degenerates crop establishment and declines yield in wheat (Triticum subsp.). Against salt (NaCl) stress, we investigated 12 bread (Triticum aestivum L.) and 10 einkorn wheat (T. monococcum subsp. monococcum) entries for germination rate, germinating power, coleoptile length, shoot length, root length, shoot/root length ratio, root fresh weight, root dry weight, and root fresh/dry weigh ratio. An effective blocking in variance analysis improved statistical significance and differentiation between germination stages and wheat entries. Salt total and salt ranking tolerance indices grouped the wheat entries into tolerant (Bayraktar 2000, Gerek 79, İkizce 96, Gün 91, Demir 2000, and …


Molecular Characterization Of Ancient Olive Genotypes From Hatay Province In Turkey, Ebru Sakar, Hülya Ünver Jan 2016

Molecular Characterization Of Ancient Olive Genotypes From Hatay Province In Turkey, Ebru Sakar, Hülya Ünver

Turkish Journal of Agriculture and Forestry

Turkey's average share of world olive production is between 7% and 10% and the country is the fourth biggest table olive and olive oil producer in the world. More than fifty olive cultivars have been commercialized in Turkey and there are numerous olive genotypes in different olive-growing regions in Turkey that differ from each other in terms of leaf, flower, and fruit characteristics. The aim of the present study was to identify the 40 most widely grown olive genotypes in Hatay Province in Turkey using microsatellite or simple sequence repeat (SSR) markers. Ten SSR loci were selected and used to …


Color, Phenolic Composition, And Antioxidant Properties Of Hardaliye(Fermented Grape Beverage) Under Different Storage Conditions, Buket Aşkin, Azi̇ze Ati̇k Jan 2016

Color, Phenolic Composition, And Antioxidant Properties Of Hardaliye(Fermented Grape Beverage) Under Different Storage Conditions, Buket Aşkin, Azi̇ze Ati̇k

Turkish Journal of Agriculture and Forestry

This study was conducted to determine the effects of storage temperature and time on color and antioxidant properties of hardaliye. Hardaliye was obtained from papazkarası blue-black grapes as a potential source of anthocyanin pigment and high antioxidant activity. Grape variety plays a significant role in color, flavor, and chemical properties. However, the effects of storage conditions on products and especially on phenolic composition and antioxidant properties are not known because there is not any research about storage effects at different temperatures. For this purpose, hardaliye was produced by the conventional method. After having been exposed to lactic acid fermentation, it …


Effects Of High Temperature Stress On Enzymatic And Nonenzymaticantioxidants And Proteins In Strawberry Plants, Sergül Ergi̇n, Hati̇ce Gülen, Müge Kesi̇ci̇, Ece Turhan, Ahmet İpek, Nezi̇he Köksal Jan 2016

Effects Of High Temperature Stress On Enzymatic And Nonenzymaticantioxidants And Proteins In Strawberry Plants, Sergül Ergi̇n, Hati̇ce Gülen, Müge Kesi̇ci̇, Ece Turhan, Ahmet İpek, Nezi̇he Köksal

Turkish Journal of Agriculture and Forestry

The mechanism of tolerance to high temperatures was investigated in two strawberry (Fragaria x ananassa Duch) cultivars, 'Redlands Hope' ('R. Hope', heat tolerant) and 'Cal. Giant 3' ('CG3', heat sensitive). Leaves were collected from plants that were exposed to gradual heat stress and heat-shock stress separately. The contents of nonenzymatic antioxidants such as ascorbic acid (AsA) and glutathione (GSH) and the activities of enzymatic antioxidants such as ascorbate peroxidase (APX) (EC 1.11.1.11), catalase (CAT) (EC 1.11.1.6), and glutathione reductase (GR) (EC. 1.6.4.2) were measured followed by heat treatments. Additionally, proline content was determined, and heat shock proteins (HSPs) were analyzed …


Thermal Resilience Of Feeding Kinematics May Contribute To The Spread Of Invasive Fishes In Light Of Climate Change, Ralph Turingan, Tyler Sloan Jan 2016

Thermal Resilience Of Feeding Kinematics May Contribute To The Spread Of Invasive Fishes In Light Of Climate Change, Ralph Turingan, Tyler Sloan

Ocean Engineering and Marine Sciences Faculty Publications

As a consequence of global warming, tropical invasive species are expected to expand their range pole-ward, extending their negative impacts to previously undisturbed, high-latitude ecosystems. Investigating the physiological responses of invasive species to environmental temperature is important because the coupled effects of climate change and species invasion on ecosystems could be more alarming than the effects of each phenomenon independently. Especially in poikilotherms, the rate of motion in muscle-driven biomechanical systems is expected to double for every 10 °C increase in temperature. In this study, we address the question, “How does temperature affect the speed of jaw-movement during prey-capture in …


Millennial-Scale Vegetation Changes In The Tropical Andes Using Ecological Grouping And Ordination Methods, Dunia H. Urrego, Henry Hooghiemstra, Oscar Rama-Corredor, Belen Martrat, Joan O. Grimalt, Lonnie Thompson, Mark B. Bush, Zaire González-Carranza, Jennifer Hanselman, Bryan Valencia, César Velásquez-Ruiz Jan 2016

Millennial-Scale Vegetation Changes In The Tropical Andes Using Ecological Grouping And Ordination Methods, Dunia H. Urrego, Henry Hooghiemstra, Oscar Rama-Corredor, Belen Martrat, Joan O. Grimalt, Lonnie Thompson, Mark B. Bush, Zaire González-Carranza, Jennifer Hanselman, Bryan Valencia, César Velásquez-Ruiz

Ocean Engineering and Marine Sciences Faculty Publications

We compare eight pollen records reflecting climatic and environmental change from northern and southern sites in the tropical Andes. Our analysis focuses on the last 30 000 years, with particular emphasis on the Pleistocene to Holocene transition. We explore ecological grouping and downcore ordination results as two approaches for extracting environmental variability from pollen records. We also use the records of aquatic and shoreline vegetation as markers for lake level fluctuations and moisture availability. Our analysis focuses on the signature of millennial-scale climate variability in the tropical Andes, in particular Heinrich stadials (HS) and Greenland interstadials (GI). The pollen records …


Noninvasive Measurement Of Electrical Events Associated With A Single Chlorovirus Infection Of A Microalgal Cell, Seung-Woo Lee, Eun-Hee Lee, Gerhard Thiel, James L. Van Etten, Ravi Saraf Jan 2016

Noninvasive Measurement Of Electrical Events Associated With A Single Chlorovirus Infection Of A Microalgal Cell, Seung-Woo Lee, Eun-Hee Lee, Gerhard Thiel, James L. Van Etten, Ravi Saraf

Department of Chemical and Biomolecular Engineering: Faculty Publications

Chlorovirus Paramecium bursaria chlorella virus 1 (PBCV-1) contains a viral-encoded K+ channel imbedded in its internal membrane, which triggers host plasma membrane depolarization during virus infection. This early stage of infection was monitored at high resolution by recording the cell membrane depolarization of a single Chlorella cell during infection by a single PBCV-1 particle. The measurement was achieved by depositing the cells onto a network of one-dimensional necklaces of Au nanoparticles, which spanned two electrodes 70 μm apart. The nanoparticle necklace array has been shown to behave as a single-electron device at room temperature. The resulting electrochemical field-effect transistor …


Modeling Shattercane Dynamics In Herbicide-Tolerant Grain Sorghum Cropping Systems, Rodrigo Werle, Brigitte Tenhumberg, John L. Lindquist Jan 2016

Modeling Shattercane Dynamics In Herbicide-Tolerant Grain Sorghum Cropping Systems, Rodrigo Werle, Brigitte Tenhumberg, John L. Lindquist

Department of Agronomy and Horticulture: Faculty Publications

Traditional breeding technology is currently being used to develop grain sorghum [Sorghum bicolor (L.) Moench ssp. bicolor] germplasm that will be tolerant to acetolactate synthase (ALS)-inhibiting herbicides. This technology (InzenTM, DuPontTM) has the potential to improve sorghum production by allowing for the postemergence control of traditionally hard-to-control grasses. However, grain sorghum and shattercane [weedy Sorghum species; Sorghum bicolor (L.) Moench ssp. drummondii (Nees ex Steud.) de Wet ex Davidse] can interbreed and introduced traits such as herbicide tolerance could increase the weediness of the weedy relative. Our objective was to develop a simulation model …


Genomic Prediction Of Single Crosses In The Early Stages Of A Maize Hybrid Breeding Pipeline, Dnyaneshwar C. Kadam, Sarah M. Potts, Martin O. Bohn, Alexander E. Lipka, Aaron J. Lorenz Jan 2016

Genomic Prediction Of Single Crosses In The Early Stages Of A Maize Hybrid Breeding Pipeline, Dnyaneshwar C. Kadam, Sarah M. Potts, Martin O. Bohn, Alexander E. Lipka, Aaron J. Lorenz

Department of Agronomy and Horticulture: Faculty Publications

Prediction of single-cross performance has been a major goal of plant breeders since the beginning of hybrid breeding. Recently, genomic prediction has shown to be a promising approach, but only limited studies have examined the accuracy of predicting single-cross performance. Moreover, no studies have examined the potential of predicting single crosses among random inbreds derived from a series of biparental families, which resembles the structure of germplasm comprising the initial stages of a hybrid maize breeding pipeline. The main objectives of this study were to evaluate the potential of genomic prediction for identifying superior single crosses early in the hybrid …


Dioxygenase-Encoding Atdao1 Gene Controls Iaa Oxidation And Homeostasis In Arabidopsis, Silvana Porco, Aleš Pěnčík, Afaf Rashed, Ute Voβ, Rubén Casanova-Sáez, Anthony Bishop, Agata Golebiowska, Rahul Bhosale, Ranjan Swarup, Kamal Swarup, Pavlína Penáková, Ondrej Novák, Paul E. Staswick, Peter Hedden, Andrew L. Phillips, Kris Vissenberg, Malcolm J. Bennett, Karin Ljung Jan 2016

Dioxygenase-Encoding Atdao1 Gene Controls Iaa Oxidation And Homeostasis In Arabidopsis, Silvana Porco, Aleš Pěnčík, Afaf Rashed, Ute Voβ, Rubén Casanova-Sáez, Anthony Bishop, Agata Golebiowska, Rahul Bhosale, Ranjan Swarup, Kamal Swarup, Pavlína Penáková, Ondrej Novák, Paul E. Staswick, Peter Hedden, Andrew L. Phillips, Kris Vissenberg, Malcolm J. Bennett, Karin Ljung

Department of Agronomy and Horticulture: Faculty Publications

Auxin represents a key signal in plants, regulating almost every aspect of their growth and development. Major breakthroughs have been made dissecting the molecular basis of auxin transport, perception, and response. In contrast, how plants control the metabolism and homeostasis of the major form of auxin in plants, indole-3- acetic acid (IAA), remains unclear. In this paper, we initially describe the function of the Arabidopsis thaliana gene DIOXYGENASE FOR AUXIN OXIDATION 1 (AtDAO1). Transcriptional and translational reporter lines revealed that AtDAO1 encodes a highly root-expressed, cytoplasmically localized IAA oxidase. Stable isotope-labeled IAA feeding studies of loss and …


The Draft Genome Of The C3 Panicoid Grass Species Dichanthelium Oligosanthes, Anthony J. Studer, James C. Schnable, Sarit Weissmann, Allison R. Kolbe, Michael R. Mckain, Ying Shao, Asaph B. Cousins, Elizabeth A. Kellogg, Thomas P. Brutnell Jan 2016

The Draft Genome Of The C3 Panicoid Grass Species Dichanthelium Oligosanthes, Anthony J. Studer, James C. Schnable, Sarit Weissmann, Allison R. Kolbe, Michael R. Mckain, Ying Shao, Asaph B. Cousins, Elizabeth A. Kellogg, Thomas P. Brutnell

Department of Agronomy and Horticulture: Faculty Publications

Background: Comparisons between C3 and C4 grasses often utilize C3 species from the subfamilies Ehrhartoideae or Pooideae and C4 species from the subfamily Panicoideae, two clades that diverged over 50 million years ago. The divergence of the C3 panicoid grass Dichanthelium oligosanthes from the independent C4 lineages represented by Setaria viridis and Sorghum bicolor occurred approximately 15 million years ago, which is significantly more recent than members of the Bambusoideae, Ehrhartoideae, and Pooideae subfamilies. D. oligosanthes is ideally placed within the panicoid clade for comparative studies of C3 and C4 grasses.

Results: …


Estimating Yield Potential In Temperate High-Yielding, Direct-Seeded Us Rice Production Systems, Matthew B. Espe, Haishun Yang, Kenneth Cassman, Nicolas Guilpart, Hussain Sharifi, Bruce A. Linquist Jan 2016

Estimating Yield Potential In Temperate High-Yielding, Direct-Seeded Us Rice Production Systems, Matthew B. Espe, Haishun Yang, Kenneth Cassman, Nicolas Guilpart, Hussain Sharifi, Bruce A. Linquist

Department of Agronomy and Horticulture: Faculty Publications

Accurate estimation of a crop’s yield potential (Yp) is critical to addressing long-term food security via identification of the exploitable yield gap. Due to lack of field data, efforts to quantify crop yield potential typically rely on crop models. Using the ORYZA rice crop model, we sought to estimate Yp of irrigated rice for two widely used rice varieties (M-206 and CXL745) in three major US rice-producing regions that together represent some of the highest yielding rice regions of the world. Three major issues with the crop model had to be addressed to achieve acceptable simulation of Yp; first, the …


Yield Gap Analysis Of Us Rice Production Systems Shows Opportunities For Improvement, Matthew B. Espe, Kenneth Cassman, Haishun Yang, Nicolas Guilpart, Patricio Grassini, Justin Van Wart, Merle Anders, Donn Beighley, Dustin Harrell, Steve Linscombe, Kent Mckenzie, Randall Mutters, Lloyd T. Wilson, Bruce A. Linquist Jan 2016

Yield Gap Analysis Of Us Rice Production Systems Shows Opportunities For Improvement, Matthew B. Espe, Kenneth Cassman, Haishun Yang, Nicolas Guilpart, Patricio Grassini, Justin Van Wart, Merle Anders, Donn Beighley, Dustin Harrell, Steve Linscombe, Kent Mckenzie, Randall Mutters, Lloyd T. Wilson, Bruce A. Linquist

Department of Agronomy and Horticulture: Faculty Publications

Many assessments of crop yield gaps based on comparisons to actual yields suggest grain yields in highly intensified agricultural systems are at or near the maximum yield attainable. However, these estimates can be biased in situations where yields are below full yield potential. Rice yields in the US continue to increase annually, suggesting that rice yields are not near the potential. In the interest of directing future efforts towards areas where improvement is most easily achieved, we estimated yield potential and yield gaps in US rice production systems, which are amongst the highest yielding rice systems globally. Zones around fourteen …


Smokey Comes Of Age: Unmanned Aerial Systems For Fire Management, Dirac L. Twidwell Jr., Craig R. Allen, Carrick Detweiler, James Higgins, Christian Laney, Sebastian Elbaum Jan 2016

Smokey Comes Of Age: Unmanned Aerial Systems For Fire Management, Dirac L. Twidwell Jr., Craig R. Allen, Carrick Detweiler, James Higgins, Christian Laney, Sebastian Elbaum

Department of Agronomy and Horticulture: Faculty Publications

During the past century, fire management has focused on techniques both to protect human communities from catastrophic wildfire and to maintain fire-dependent ecological systems. However, despite a large and increasing allocation of resources and personnel to achieve these goals, fire management objectives at regional to global scales are not being met. Current fire management techniques are clearly inadequate for the challenges faced by fire managers, and technological innovations are needed. Advances in unmanned aerial systems (UAS) technology provide opportunities for innovation in fire management and science. In many countries, fire management organizations are beginning to explore the potential of UAS …