Life Sciences Commons^™

Development Of A Genetic Modification System In Clostridium Scatologenes Atcc 25775 For Generation Of Mutants, Prasanna Tamarapu Parthasarathy

Masters Theses & Specialist Projects

3-Methyl indole (3-MI) is a malodorant in food and animal waste and Clostridium scatologenes ATCC 25775 is the model organism for the study of 3-MI production. 3-MI is an anaerobic degradation product of L-tryptophan and can cause pulmonary disorders and death in cattle and goats. To elucidate the 3-MI biosynthesis pathway and the underlying genes, it is necessary to develop a system to allow genetic modification in Clostridium scatologenes ATCC 25775. Bacteriophages and transposons are useful tools to achieve this goal. Isolation of Clostridium scatologenes ATCC 25775 bacteriophage was attempted by prophage induction and enrichments using environmental sources. To induce …

An Assessment Of The Use Of Chimpanzees In Hepatitis C Research Past, Present And Future: 2. Alternative Replacement Methods, Jarrod Bailey

Experimentation Collection

The use of chimpanzees in hepatitis C virus (HCV) research was examined in the report associated with this paper (1: Validity of the Chimpanzee Model), in which it was concluded that claims of past necessity of chimpanzee use were exaggerated, and that claims of current and future indispensability were unjustifiable. Furthermore, given the serious scientific and ethical issues surrounding chimpanzee experimentation, it was proposed that it must now be considered redundant — particularly in light of the demonstrable contribution of alternative methods to past and current scientific progress, and the future promise that these methods hold. This paper builds on …

An Assessment Of The Use Of Chimpanzees In Hepatitis C Research Past, Present And Future: 1. Validity Of The Chimpanzee Model, Jarrod Bailey

Experimentation Collection

The USA is the only significant user of chimpanzees in biomedical research in the world, since many countries have banned or limited the practice due to substantial ethical, economic and scientific concerns. Advocates of chimpanzee use cite hepatitis C research as a major reason for its necessity and continuation, in spite of supporting evidence that is scant and often anecdotal. This paper examines the scientific and ethical issues surrounding chimpanzee hepatitis C research, and concludes that claims of the necessity of chimpanzees in historical and future hepatitis C research are exaggerated and unjustifiable, respectively. The chimpanzee model has several major …

Salmon For Terrestrial Protected Areas, Chris T. Darimont, Heather M. Bryan, Stephanie M. Carlson, Morgan D. Hocking, Misty Macduffee, Paul C. Paquet, Michael H. H. Price, Thomas E. Reimchen, John D. Reynolds, Christopher C. Wilmers

Environment and Nature Conservation Collection

Although managers safeguard protected areas for migratory species, little consideration has been given to how migratory species might benefit parks. Additionally, whereas land‐sea connections are considered in management of protected areas, most effort has focused on reducing negative “downstream” processes. Here, we offer a proposal to promote positive “upstream” processes by safeguarding the seasonal pulse of marine nutrients imported into freshwater and riparian ecosystems by spawning migrations of Pacific salmon. Currently, high rates of fishing limit this important contribution to species and processes that terrestrial parks were designed to protect. Accordingly, we propose limiting exploitation in areas and periods through …

Flowering Locus C Influences The Timing Of Shoot Maturation In Arabidopsis Thaliana, Laurie Mentzer, Tarah Yee, Tina Y. Wang, Edward Himelblau

Biological Sciences

No abstract provided.

Cloning Of A Chlamydomonas Reinhardtii Marker Into A Rna Interference Construct To Test Whether The Photoreceptor Chlamyrhodopsin Is Involved In Circadian Clock Resetting, Shravya Reddy Maddi

Masters Theses & Specialist Projects

Chlamydomonas reinhardtii, a unicellular eukaryotic green alga, serves as a model organism to study the circadian clock in plants and animals. Rhodopsins are blue/green-light photoreceptors also found in C. reinhardtii. Chlamyrhodopsin (COP), the most abundant eyespot protein, was reported to have no role in the phototactic and photophobic responses in C. reinhardtii. Its function is yet unknown.
In the present study, we hypothesized that the function of COP is to mediate entrainment of the circadian clock by light. In order to test this hypothesis, a C. reinhardtii selection marker conferring resistance to the antibiotic paromomycin was cloned …

Topsoil Quality Guidelines For Landscaping, Rich Koenig, Von Isaman

All Archived Publications

No abstract provided.

Topsoil Quality Guidelines For Landscaping, Rich Koenig, Von Isaman

Gardening

No abstract provided.

[Accepted Article Manuscript Version (Postprint)] Pex5 Mutants That Differentially Disrupt Pts1 And Pts2 Peroxisomal Matrix Protein Import In Arabidopsis, Bibi Khan, Bethany Zolman

Biology Department Faculty Works

PEX5 and PEX7 are receptors required for the import of peroxisome-bound proteins containing one of two peroxisomal targeting signals (PTS1 or PTS2). To better understand the role of PEX5 in plant peroxisomal import, we characterized the Arabidopsis (Arabidopsis thaliana) pex5-10 mutant, which has a T-DNA insertion in exon 5 of the PEX5 gene. Sequencing results revealed that exon 5, along with the T-DNA, is removed in this mutant, resulting in a truncated pex5 protein. The pex5-10 mutant has germination defects and is completely dependent on exogenous Suc for early seedling establishment, based on poor utilization of seed-storage fatty acids. This …

Fisheries-Dependent Indicators Of Climate Change In Western Australia Wamsi:Sub-Project 4.2.3, Nick Caputi, Alan Pearce

Fisheries Research Reports

The use of fishery-dependent data may be a cost-effective way of assessing whether there have been any changes in the distribution and relative abundance of species. Such indicators are part of an ongoing data gathering system and the costs are relatively low compared to those of a fishery-independent field program. Fishery-dependent data may therefore be obtained at a higher frequency and allow detection of changes faster than would be possible from the results from the direct sampling of specific sites within entire ecosystems.

Sagestep News, Fall 2010, No. 13, Sagestep

Newsletters

Seasonal newsletter of SageSTEP.

Appearance Based Stage Recognition Of Drosophila Embryos, Gopi Chand Nutakki

Masters Theses & Specialist Projects

Stages in Drosophila development denote the time after fertilization at which certain specific events occur in the developmental cycle. Stage information of a host embryo, as well as spatial information of a gene expression region is indispensable input for the discovery of the pattern of gene-gene interaction. Manual labeling of stages is becoming a bottleneck under the circumstance of high throughput embryo images. Automatic recognition based on the appearances of embryos is becoming a more desirable scheme. This problem, however, is very challenging due to severe variations of illumination and gene expressions. In this research thesis, we propose an appearance …

Analysis Of The Clear Plaque Phenotype Of The Bacteriophage Hk75, Phani Chandrika Kunapuli

Masters Theses & Specialist Projects

The growth of bacteriophage HK75 is inhibited by specific mutations in the zinc binding domain of the host RNA polymerase beta prime subunit. It shares this rare property with bacteriophage HK022 and other phages that use RNA mediated antitermination to promote early gene expression. Recent genomic analysis of HK75 and HK022 has confirmed the relatedness of these two phages and place HK75 in the lambdoid family of bacteriophages. Lambdoid phages are temperate and can adopt a lytic or lysogenic lifestyle upon infection of a suitable host. However, HK75 only forms clear plaques and thus appears to be defective in its …

Caffeine Supplementation And Moderate Intensity Exercise Modulates The Cytotoxic Lymphocyte Subset (Cd+8) In Naive And Tolerant Individuals, Elizabeth Ann Fedor

Masters Theses & Specialist Projects

The purpose of this investigation was to determine the effects of caffeine supplementation on caffeine tolerant and caffeine naïve individual’s lymphocyte counts, apoptosis and migration levels. In addition, effects of exercise on post-caffeine ingestion lymphocyte counts, apoptosis and migration levels were determined. It was hypothesized that caffeine would alter the immune system cell counts, but that exercise would be able to restore the immune system to homeostasis. Seventeen Western Kentucky University students were tested (males n=7, females n=10; n=7: caffeine tolerant= 200mg or more per day group, n=9: caffeine naïve= 50mg or less per day group). In this double-blind investigation, …

What Brown Saw And You Can Too, Philip Pearle, Brian Collett, Kenneth Bart, David Bilderback, Dara Newman, D. Scott Samuels

Biological Sciences Faculty Publications

A discussion of Robert Brown’s original observations of particles ejected by pollen of the plant Clarkia pulchella undergoing what is now called Brownian motion is given. We consider the nature of those particles and how he misinterpreted the Airy disk of the smallest particles to be universal organic building blocks. Relevant qualitative and quantitative investigations with a modern microscope and with a “homemade” single lens microscope similar to Brown’s are presented.

Science As A Human Right: Esa And The Aaas Science And Human Rights Coalition, Clifford Duke, George Middendorf, Jessica Wyndham

Department of Biology Faculty Publications

No abstract provided.

The River Discontinuum: Applying Beaver Modifications To Baseline Conditions For Restoration Of Forested Headwaters, Denise Burchsted, Melinda Daniels, Robert Thorson, Jason Vokoun

Center for Integrative Geosciences

Billions of dollars are being spent in the United States to restore rivers to a desired, yet often unknown, reference condition. In lieu of a known reference, practitioners typically assume the paradigm of a connected watercourse. Geological and ecological processes, however, create patchy and discontinuous fluvial systems. One of these processes, dam building by North American beavers (Castor canadensis), generated discontinuities throughout precolonial river systems of northern North America. Under modern conditions, beaver dams create dynamic sequences of ponds and wet meadows among free-flowing segments. One beaver impoundment alone can exceed 1000 meters along the river, flood the valley laterally, …

Developing Entrepreneurship, The Tanzania Experience: Sua-Intsormil Project, Joseph J. Mpagalile, Wenceslaus R. Ballegu

INTSORMIL Presentations

Project Title: Building a Sustainable Infrastructure for Product Development and Food Entrepreneur/Industry Technical Support: A Strategy to Promote Increased Use of Sorghum and Millet in East Africa.

Long Term Program Objectives: Development of successful entrepreneurial businesses that add-value to sorghum and millet such that:

~Farmers have an established outlet for cash sales of high-quality sorghum and millet

~Small businesses or cooperatives develop processing capabilities enabling the incorporation of sorghum and millet into a wide variety of food products

~Markets and market channels for sorghum and millet-based products develop.

Further develop research, extension and marketing expertise of National Agricultural Research Institutes …

Expression Of Functional Bacterial Undecaprenyl Pyrophosphate Synthase In The Yeast Rer2{Delta} Mutant And Cho Cells., Jeffrey S. Rush, Sergey Matveev, Ziqiang Guan, Christian R H Raetz, C J Waechter

Molecular and Cellular Biochemistry Faculty Publications

During evolution the average chain length of polyisoprenoid glycosyl carrier lipids increased from C55 (prokaryotes) to C75 (yeast) to C95 (mammalian cells). In this study, the ability of the E. coli enzyme, undecaprenyl pyrophosphate synthase (UPPS), to complement the loss of the yeast cis-isoprenyltransferase in the rer2Δ mutant was tested to determine if (55)dolichyl phosphate (Dol-P) could functionally substitute in the protein N-glycosylation pathway for (75)Dol-P, the normal isoprenologue synthesized in S. cerevisiae. First, expression of UPPS in the yeast mutant was found to complement the growth and the hypoglycosylation of carboxypeptidase Y defects suggesting that the (55)polyprenyl-P-P intermediate was …

Seasonal Aggregations Of The Florida Manatee (Trichechus Manatus Latirostris) In The Port Everglades And Intracoastal Regions Of Fort Lauderdale, Florida., Jaime M. Goldman

HCNSO Student Theses and Dissertations

The Florida manatee (Trichechus manatus latirostris), a subspecies of the West Indian manatee, is one of the most endangered marine mammals in United States waters. The Florida manatee is the only manatee that ranges into subtropical and temperate regions. During the winter months manatees adopt a “refuging strategy” where they aggregate at warm-water sources immediately following decreases in the ambient water temperature to below 20° C (68° F) in order to avoid cold stress syndrome (CSS). During the winter manatees aggregate in warm water refuges, including natural warm water springs and the effluent discharges of power plants.

The …

The Status Of Dwarfed Populations Of Short-Horned Lizards (Phrynosoma Hernandesi) And Great Plains Toads (Anaxyrus Cognatus) In The San Luis Valley, Colorado, Megan E. Lahti

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The San Luis Valley is a large valley formation in Colorado surrounded on either side by mountain ranges exceeding 4,267 m. Within the Valley, two of the 14 amphibian and reptile species are dwarfed: the short-horned lizard (Phrynosoma hernandesi) and the Great Plains toad (Anaxyrus cognatus). Since its initial reporting in 1968 and confirmation in 1981, no research further investigating this dwarfism has been conducted. I collected morphological measurements to determine the extent and patterns of dwarfism of both species. I then investigated the genetics of both species using mitochondrial DNA to determine whether they are …

Assessment Of Ruminal Fermentation Characteristics Of Condensed Tannin-Containing Forages Using Continuous Cultures, Christina Marie Williams

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Two independent studies were conducted to assess the effects of feeding condensed tannin (CT)-containing forages to continuous cultures to evaluate their impacts on ruminal fermentation and digestibility, with an emphasis on methane (CH4) and ammonia-N (NH3-N) production. In Chapter 3, treatments consisted of: 1) 100% alfalfa hay (AH), 2) 50% AH and 50% birdsfoot trefoil hay (dry matter (DM) basis; AHBFTH), and 3) 100% birdsfoot trefoil hay (BFTH). Three replicated runs lasted 8 d each, with the first 5 d allowed for microbial adaptation to the diets, and 3 d for data collection and sampling. Methane, neutral detergent fiber (NDF) …

Sagestep News, Winter 2010, No. 11, Sagestep

Newsletters

Seasonal newsletter of SageSTEP.

Assessing Linkages Among Landscape Characteristics, Stream Habitat, And Macroinvertebrate Communities In The Idaho Batholith Ecoregion, Andrew C. Hill

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Understanding the composition of lotic communities and the landscape processes and habitat characteristics that shape them is one of the main challenges confronting stream ecologists. In order to better understand the linkages among landscape processes, stream habitat, and biological communities and to understand how accurately our measurements represent important factors influencing biological communities, it is important to test explicit hypotheses regarding these linkages. Increasing our understanding of aquatic communities in a hierarchical context and recognizing how well our measurements represent factors structuring aquatic communities will help managers better evaluate the influence of land management practices on aquatic ecosystems, direct conservation …

Interclonal Variation Of Primary And Secondary Chemistry In Western Quaking Aspen And Its Influence On Ungulate Selection, Damon A. Winter

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Quaking aspen (Populus tremuloides) clones within close proximity to one another can exhibit drastically different levels of browsing by ungulates. The objectives of this study were to (1) determine interclonal differences in plant chemistry between adjacent clones exhibiting different degrees of herbivory which may influence the browsing behavior and patterns of ungulates, and (2) determine if correlation exists in the levels of salicortin and tremulacin between current year's suckers and current year's growth on older trees. This second objective was meant to indicate a protocol for land managers for identifying clones meriting increased protection from herbivory after treatment …

Enhancing Out-Of-Season Production Of Tomatoes And Lettuce Using High Tunnels, Britney L. Hunter

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The growing season for vegetable crops is limited by freezing temperatures in arid high elevation climates such as northern Utah. Logan, Utah (41.73 N, 111.83 W, 1382 m elevation) has a short, variable growing season with an average frost-free period of 135 days. Extending the growing season provides growers with an opportunity to extend revenue into a normally unproductive period and benefit from out-of-season price premiums. High tunnels have been used to effectively extend the growing season for numerous crops by providing cold temperature protection. However, limited high tunnel research has been performed in arid high elevation regions that experience …

Effects Of Short-Term, High-Force Resistance Training On High-Intensity Exercise Capacity., Patrick Abi Nader

Electronic Theses and Dissertations

The purpose of this study was to assess the effects of short-term high-intensity resistance training on time to exhaustion at maximal aerobic output. It was hypothesized that 2 weeks of training will induce improvements in performance at maximal aerobic output. Eighteen subjects participated in this study. Subjects were assigned to a control (n=8) or resistance training (n=10) groups. The resistance training group participated in 5 sessions of strength training over a period of 2 weeks on the leg press device. Both groups participated in pre and post intervention testing. After the intervention strength in the training group significantly increased (p=.00). …

Role Of Eukaryotic Sel-1 Like Repeat Containing Genes In Helicobacter Pylori Evolution And Pathogenesis., Kalyani Putty

Electronic Theses and Dissertations

Background: Helicobacter pylori (Hp) establishes life-long gastric infection in billions of humans, and is often responsible for diseases such as peptic ulcer and gastric cancer. Cumulative actions of genetic drift and natural selection over several millennia sculpted the present Hp population structure, which is characterized by extreme genetic diversity and striking geographic clustering of genotypes. Natural selection is more commonly imprinted in DNA sequences of Hp proteins that interact with host components; however, in most instances biological relevance of selection during Hp infection remains unknown. Here, I attempted to elucidate the consequence of natural selection in two different contexts: (1) …

Forage News [2010-12], Department Of Plant And Soil Sciences, University Of Kentucky

Forage News

• Register Now for Grazing Conference
• Forage Spokesman Contest and KFGC Award Nominations
• PFGC Celebrates 50th Anniversary
• Forage Variety Test Reports
• Feed Costs and Meat Production
• Corn Nitrogen Fertilizer Replacement Value of Alfalfa in Northern Illinois
• Comparison of Seeding Rates and Coating on Seedling Count, Root Length, Root Weight and Shoot Weight of Crimson Clover
• Effect of Macronutrient Deficiency on the Antioxidant Capacity of Lespedeza Cuneata (cv. Au Grazer) and Lotus Corniculatus (cv. Pardee)

Flank Gland-Secreted Putative Chemosignals Pertaining To Photoperiod, Endocrine States, And Sociosexual Behavior In Golden Hamsters, Ying-Juan Liu, Da-Wei Wang, Lixing Sun, Jin-Hua Zhang, Jian-Xu Zhang

All Faculty Scholarship for the College of the Sciences

Behavioral studies have shown that flank glands are involved in chemical communication in golden hamsters Mesocricetus auratus but little chemical analysis has been conducted on volatiles arising from these glands. Using gas chromatography- mass spectrometry, we detected compounds from the flank glands of males, only eight of which were also produced in females. Based on these chemical data we performed a number of further experiments. By manipulating light we found that males exposed to short-photoperiods developed smaller flank glands than those exposed to long-photoperiods. Six flank gland volatiles reduced in relative abundance, which possibly coded for reproductive status of males …