Life Sciences Commons^™

Semantic Web For Health Care And Biomedical Informatics, Amit P. Sheth

Kno.e.sis Publications

No abstract provided.

Foraging Behavior And Habitat Use By The Carolina Chickadee (Poecile Carolinensis) In West-Central Indiana, Ihan Chen

All-Inclusive List of Electronic Theses and Dissertations

I studied the effect of environmental conditions on the foraging behavior of Carolina chickadees (Poecile carolinensis) in Kiewig woods, property of Indiana State University, in West Terre Haute in west-central Indiana. My study method uses Optimal Foraging Theory (Brown 1988) to measure the giving up density (GUD) of Chickadees under different environmental conditions ( different resource abundances, different habitat types, different resource types and different seasons). For my experiment, I set up 24 feeding stations in three kinds of habitats ( open area, secondary growth woods and mature woods) within 4 sites and paired trays in each habitat X site. …

Hobo Or Not A Hobo-That Is The Question: A Photographic Key To Discerning Hobo From Non-Hobo Spiders, Ryan Davis

All Current Publications

This key is intended for use with, at a minimum, a microscope with 8-35x zoom capability. In addition to couplet choices based on anatomy, this key is accompanied by pictures taken with a Leica EZ4D stereoscope (the same scopes given to selected Utah Extension offices) to aid in identification.

Dry Beans, Unknown Unknown

All Current Publications

This fact sheet lists details of dry bean crop insurance.

When Using Intensive Grazing Practices, Does It Matter How Often You Move Cattle To A New Paddock On Improved, Irrigated Pastures In Utah?, R. D. Weidmeier

All Current Publications

This publication includes results from a study that answers the question of how often to move cattle to a new paddock when using intensive grazing practices.

Parker Mountain Adaptive Resource Management Group 2007 Annual Report, Michael Guttery, David Dahlgren, Michael Monsen, Terry Messmer

All Current Publications

No abstract provided.

Monitoring Old Growth In Frequent-Fire Landscapes, Carl E. Fiedler, Peter Friederici, Mark Petruncio

Forest Management Faculty Publications

In this article, we discuss how to monitor the structural and functional attributes of old growth, as well as its associated plant communities and wildlife, both to determine the possible need for treatment and to assess post-treatment progress toward desired conditions. Monitoring can be used to detect conditions (or agents) that threaten existing old growth and also to document indicators of healthy, functioning old-growth systems.

Managing For Old Growth In Frequent-Fire Landscapes, Carl E. Fiedler, Peter Friederici, Mark Petruncio, Charles Denton, W. David Hacker

Forest Management Faculty Publications

There is no one-size-fits-all approach to managing frequent-fire, old-growth forests. However, there are general guidelines to follow: 1) set objectives for both structure (tree density, diameter distribution, tree species composition, spatial arrangement, amount of coarse woody debris) and function (nutrient cycling, desired tree species regeneration); 2) prioritize treatments according to ecological, economic, and social needs and risks; 3) identify the potential treatments (natural fire, prescribed fire, silvicultural cutting) that best meet the objectives and scale of the project; and 4) implement the treatment (s). We discuss each of these guidelines in this article.

Pattern Analysis Of Microtubule-Polymerizing And -Depolymerizing Agent Combinations As Cancer Chemotherapies, Carol A. Heckman, S. O. Uppal, Y. Li, E. Wendt, M. L. Cayer, J. Barnes, D. Conway, N. Boudreau

Biological Sciences Faculty Publications

Subcellular distribution of mass can be analyzed by a technique that involves culturing cells on interferometers and digitizing their interference contours. Contour sampling resulted in 102 variables per cell, which were predictors of oncogenic transformation. Cell phenotypes can be deconstructed by use of latent factors, which represent the covariance of the real variables. The reversal of the cancertype phenotype by a combination of microtubule- stabilizing and -depolymerizing agents was described previously. The implications of these results have been explored by clinicians who treated patients with the combination of docetaxel and vinorelbine (Navelbine®). The current study was performed to determine the …

The Glossina Proteolytic Lectin (Gpl) Gene Is Expressed Only In Members Of Glossina Species, M. W. Burugu, B. N. Mbatia, E. O. Osir, E. U. Kenya, L. U. Abubakar

All Peer-Reviewed Publications

Differentiation of bloodstream-form trypanosomes into procyclics in tsetse flies (Diptera: Glossinidae) is a crucial step in the establishment of midgut infections. A number of factors have been implicated in the transformation process, including enzymes and lectins or lectin-like molecules. Recently, Glossina proteolytic lectin (Gpl) gene, which encodes a protein with both lectin and trypsin activities has been shown to stimulate transformation of bloodstream-form trypanosomes into procyclics in vitro. Using RT-PCR, we show that the induction of Gpl gene expression by blood meal occurs only in Glossina fuscipes fuscipes Newstead, Glossina austeni Newstead, Glossina pallidipes Austen, and not in the Anopheles …

Laboratory Method To Estimate Rain-Induced Splitting In Cultivated Blueberries, Donna A. Marshall-Shaw, James M. Spiers, Stephen J. Stringer, Kenneth J. Curry

Faculty Publications

Preharvest rainfall that occurs when fruit are fully ripe or approaching full ripeness can result in detrimental fruit splitting in rabbiteye and southern highbush blueberries. This study was initiated to develop a laboratory method to model rain-related incidence of splitting in cultivated blueberries with the goal of predicting the incidence of splitting in blueberry cultivars and selections. Multiyear field surveys of rabbiteye and southern highbush cultivars show that the incidence of rain-related splitting is strongly cultivar-dependent. Laboratory values for forced splitting and naturally occurring rain-related field splitting data show a strong correlation indicating that the incidence of fruit splitting can …

Evalution Of The Efficacy Of The Photosystem Ii Inhibitor Dcmu In Periphyton And Its Effects On Nontarget Microorganisms And Extracellular Enzymatic Reactions, Steven N. Francoeur, Audrey C. Johnson, Kevin A. Kuehn, Robert K. Neely

Faculty Publications

We examined the efficacy of the photosystem II inhibitor 3-(3,4-diclorophenyl)-1,1-dimethyl urea (DCMU) for inhibition of algal photosynthesis in periphyton associated with submerged decomposing litter of Typha angustifolia. We also investigated the possible nontarget effects of DCMU exposure on heterotrophic microorganisms (i.e., bacteria and fungi) and extracellular enzyme activity associated with decaying litter. Standing-dead Typha leaf litter was submerged for 34 and 73 d, returned to the laboratory, and used for controlled laboratory experiments that examined the effect of DCMU on algal ([¹⁴C]bicarbonate, pulse-amplitude modulated fluorometry), bacterial ([³H]leucine), and fungal ([¹⁴C]acetate) production. Simultaneous assays …

Mapk Survival Signaling In Melanoma, Matthew W. Vanbrocklin

Dissertations

Extracellular signals activate mitogen-activated protein kinase (MAPK) cascades potentiating biological activities such as cell proliferation, differentiation, and survival. Constitutive activation of MAPK signaling pathways is implicated in the development and progression of many human cancers, including melanoma. Mutually exclusive activating mutations in NRAS or BRAF are found in ∼85% of all melanomas resulting in constitutive activation of the MAPK pathway (RAS-BRAF-MEK-ERK-RSK). We have previously demonstrated that inhibition of this pathway with small molecule MEK inhibitors selectively induces apoptosis in human melanoma cells both in vitro and in vivo, but not in normal melanocytes. These results support the notion that the …

Skeleton Weed - Best Practice Management Guidelines For Cropping Programs, Department Of Agriculture And Food, Western Australia

Bulletins 4000 -

Skeleton weed (Chondrilla juncea L.) is the only species within the genus Chondrilla that is found in Australia. It belongs to the tribe Cichoriae (chicory tribe) of the family Asteraceae (the daisies). Other closely related species in this tribe include lettuce, endive, dandelion (Taraxacum officinale), hawkweed (Hieracium spp.), and sow thistle (Sonchus spp.).

Spatial Ecology Of The Desert Tortoise: Sampling Frequency And Biological Influences, Meagan L. Harless

Loma Linda University Electronic Theses, Dissertations & Projects

Understanding the spatial ecology of an animal is crucial for making positive efforts to provide for its recovery. As a part of this understanding, home range estimates are used to answer a variety of questions in ecological studies. However, home range estimates based on a collection of radio-telemetry locations are sensitive to methodological variables, such as sample size, sampling frequency, and the choice of estimator. Further confounding these estimates are a number of physical, social, and ecological factors. Identifying the main determinants of space use patterns by a species may aid conservation efforts.

The Desert Tortoise (Gopherus agassizii)of the …

Temporal Fatty Acid Fluctuations Of Pachygrapsus Crassipes In Southern California, April Dawn Sjoboen

Loma Linda University Electronic Theses, Dissertations & Projects

The current investigation identified fatty acids (FAs) and quantified total and specific FA concentrations in the striped shore crab, Pachygrapsus crassipes. I examined changes in the abundance of individual FAs and FA saturation categories (saturated, monounsaturated, polyunsaturated) over months and between sexes. Fatty acid fluctuations were compared with reported temperatures from a location near the collection site to determine whether temperature significantly contributed to these changes. The abundances of palmitoleic acid, palmitic acid, and docosahexaenoic acid (DHA) were found to fluctuate significantly on a monthly basis, with a higher abundance in warm months than in cold months. This fluctuation appeared …

A Statistical Appraisal Of Disproportional Versus Proportional Microbial Source Tracking Libraries, Brian J. Robinson, Kerry J. Ritter, Rudolph D. Ellender

Faculty Publications

Library-based microbial source tracking (MST) can assist in reducing or eliminating fecal pollution in waters by predicting sources of fecal-associated bacteria. Library-based MST relies on an assembly of genetic or phenotypic "fingerprints" from pollution-indicative bacteria cultivated from known sources to compare with and identify fingerprints of unknown origin. The success of the library-based approach depends on how well each source candidate is represented in the library and which statistical algorithm or matching criterion is used to match unknowns. Because known source libraries are often built based on convenience or cost, some library sources may contain more representation than others. Depending …

The Emergence Of Sex, Ursula Goodenough

Biology Faculty Research

Biological traits, the foci of natural selection, are by definition emergent from the genes, proteins, and other “nothing-buts” that constitute them. Moreover, and with the exception of recently emergent “spandrels,” each can be accorded a teleological dimension—each is “for” some purpose conducive to an organism's continuation. Sex, which is “for” the generation of recombinant genomes, may be one of the most ancient and ubiquitous traits in biology. In the course of its evolution, many additional traits, such as gender and nurture, have emerged. Patterns of sexual exchange are the basis for patterns of biological evolution and are central to the …

Phylogeny, Adaptive Radiation, And Historical Biogeography Of Bromeliaceae Inferred From Ndhf Sequence Data, Thomas J. Givnish, Kendra C. Millam, Paul E. Berry, Kenneth J. Sytsma

Aliso: A Journal of Systematic and Floristic Botany

Cladistic analysis of ndhF sequences identifies eight major bromeliad clades arranged in ladderlike fashion. The traditional subfamilies Tillandsioideae and Bromelioideae are monophyletic, but Pitcairnioideae are paraphyletic, requiring the description of four new subfamilies, recircumscription of Pitcairnioideae and Navioideae, the sinking of Ayensua, and description of the new genus Sequencia. Brocchinioideae are basalmost, followed by Lindmanioideae, both restricted to the Guayana Shield. Next is an unresolved trichotomy involving Hechtioideae from Central America, Tillandsioideae, and the remaining bromeliads in subfamilies Navioideae, Pitcairnioideae, Puyoideae, and Bromelioideae. Bromeliads arose as C₃ terrestrial plants on moist infertile sites in …

Towards A Comprehensive Survey Of C3 And C4 Photosynthetic Pathways In Cyperaceae, Jeremy J. Bruhl, Karen L. Wilson

Aliso: A Journal of Systematic and Floristic Botany

Members of the family Cyperaceae were surveyed by original observation and from the literature to assess the distribution of C₃ and C₄ photosynthetic pathways in the family. All 107 genera were included in the current sample, with 91 genera assessed as consistently C₃ and 11 genera as C₄. The genera Abildgaardia, Cyperus, Eleocharis, Fimbristylis, and Rhynchospora are variable for this trait. Of the total number (1474) of specific (1406) and infraspecific (68) taxa sampled, 938 taxa (63%) are C₃, 527 taxa (36%) are C₄, and nine species …

A Preliminary Phylogenetic Analysis Of The Grass Subfamily Pooideae (Poaceae), With Attention To Structural Features Of The Plastid And Nuclear Genomes, Including An Intron Loss In Gbssi, Jerrold I Davis, Robert J. Soreng

Aliso: A Journal of Systematic and Floristic Botany

Phylogenetic relationships in the grass family (Poaceae), with specific attention to the internal structure of subfamily Pooideae, are analyzed on the basis of nucleotide sequence variation in plastid-encoded genes (matK, ndhF, ndhH, and rbcL). The resulting phylogenetic hypothesis was examined with attention to the taxonomic distributions of two inversions and an insertion/deletion within ndhF, the absence of intron 10 of the nuclear gene GBSSI (waxy), and positions of the boundaries between the Short Single Copy (SSC) region and the neighboring Inverted Repeat (IR) regions of the plastid genome, relative to the endpoints of ndh …

Phylogenetic Relationships Among The One-Flowered, Determinate Genera Of Bambuseae (Poaceae: Bambusoideae), Lynn G. Clark, Soejatmi Dransfield, Jimmy Triplett, J. Gabriel Sánchez-Ken

Aliso: A Journal of Systematic and Floristic Botany

Bambuseae (woody bamboos), one of two tribes recognized within Bambusoideae (true bamboos), comprise over 90% of the diversity of the subfamily, yet monophyly of the tribe is generally only moderately supported, and phylogenetic relationships within the tribe are poorly understood. In addition, there appears to be some level of conflict between morphological and molecular data within the tribe. We conducted a parsimony analysis of 43 species of Bambuseae, three of Olyreae (herbaceous bamboos), and two outgroup taxa using morphological and plastid rpl16 intron sequence data to (1) further test the monophyly of Bambuseae, (2) test the monophyly of Chusqueinae …

Phylogenetics Of Chloridoideae (Gramineae): A Preliminary Study Based On Nuclear Ribosomal Internal Transcribed Spacer And Chloroplast Trnl–F Sequences, J. Travis Columbus, Rosa Cerros-Tlatilpa, Michael S. Kinney, Maria Elena Siqueiros-Delgado, Hester L. Bell, M. Patrick Griffith, Nancy F. Refulio-Rodriguez

Aliso: A Journal of Systematic and Floristic Botany

The phylogeny of Chloridoideae (Gramineae) was inferred from parsimony analyses of DNA sequences from two genomes—the chloroplast trnL intron, trnL 3' exon, and trnL–F intergenic spacer, and the nuclear ribosomal internal transcribed spacer region (ITS1 + 5.8S + ITS2). Eighty species representing 66 chloridoid genera were sampled, including all but four of the native New World genera. Analyses of the individual and combined data sets were performed. The phylogenies were found to be highly congruent. Of the four tribes and seven subtribes of Chloridoideae sensu Clayton and Renvoize (1986) whose phylogenetic status could be tested with our …

Gordie News, December 2007, West Chester University Of Pennsylvania

Gordon Natural Area History & Strategic Plan Documents

No abstract provided.

Seasonal Changes In Thermal Conductance Of Bat Pelage: A Comparison Of The Eastern Red Bat (Lasiurus Borealis) And Big Brown Bat (Eptesicus Fuscus), Daniel Justin Judy

All-Inclusive List of Electronic Theses and Dissertations

Two species with different ecologies and natural histories use different morphological characteristics and thermoregulatory strategies to survive seasonal environmental changes. The purpose of this project was to investigate two such species, the eastern red bat (Lasiurus borealis) and big brown bat (Eptesicus fuscus). Red bats roost in the foliage of trees and occasionally leaf litter and have dense fur, as well as a furred interfemoral membrane. These two species differ in their morphology and roosting ecology in that big brown bats are generally larger with less dense fur, no fur on the interfemoral membrane, and are less exposed to environmental …

Effects Of Knee Bracing On Vertical Jumping Performance In Healthy College Aged Males, Rebecca E. Rausch

All-Inclusive List of Electronic Theses and Dissertations

Knee bracing is used at all levels of athletics to prevent or support existing knee injuries; however, little research has been conducted on the effects of knee braces on athletic performance. Therefore, the purpose of this study was to examine how two different types of knee braces, semi-customizable braces and knee sleeves, affect vertical jumping performance. Subjects were nine college aged males who regularly participated in athletic activity. Subjects performed a task consisting of a drop jump from a height of 18 inches, landing in a squat position, followed immediately by a maximal vertical jump while wearing two different knee …

Genome-Wide Transcriptional Profiling Of The Cyclic Amp-Dependent Signaling Pathway During Morphogenic Transitions Of Candida Albicans, Yong-Sun Bahn, Matthew Molenda, Janet F. Staab, Courtney A. Lyman, Laura J. Gordon, Paula Sundstrom

Dartmouth Scholarship

Candida albicans is an opportunistic human fungal pathogen that causes systemic candidiasis as well as superficial mucosal candidiasis. In response to the host environment, C. albicans transitions between yeast and hyphal forms. In particular, hyphal growth is important in facilitating adhesion and invasion of host tissues, concomitant with the expression of various hypha-specific virulence factors. In previous work, we showed that the cyclic AMP (cAMP) signaling pathway plays a crucial role in morphogenic transitions and virulence of C. albicans by studying genes encoding adenylate cyclase-associated protein (CAP1) and high-affinity phosphodiesterase (PDE2) (Y. S. Bahn, J. Staab, and P. Sundstrom, Mol. …

Prey Naiveté: Evolutionary And Ecological Implications, Jonathan G. Cox

All-Inclusive List of Electronic Theses and Dissertations

Despite its ecological importance, the concept of prey naivete has become a biological truism that receives little study. I explored the evolution of naivete and its likely influence on two major ecological patterns: a) the historically greater destructiveness of freshwater predator introductions, and b) the greater strength of aquatic trophic cascades. In a review of the ecological literature, I demonstrate that the conditions for the evolution of naivete (isolation) exist in freshwater habitats at multiple spatial scales. In addition, I show that freshwater prey exhibit naivete which could be responsible for the high impacts of freshwater predator introductions. I then …

Effects Of An Angled Starting Block On Sprint Start Kinematics, Nathaniel A. Brown

All-Inclusive List of Electronic Theses and Dissertations

The purpose of the present study was to investigate the effects of an angled proto-type starting block on sprint start kinematics. The angled starting block rotates the foot medially at a 16 degree angle, which emulates the 16 degree angle of the ankle on the medial axis of the foot. This 16 degree should allow for the athlete to apply more force against the block, resulting in a higher velocity at take-off and a faster block clearance time. In the present study, six female collegiate sprinters were filmed and analyzed using the angled starting block and a standard starting block. …

Vertebrate Osmoregulation: A Student Laboratory Exercise Using Teleost Fish, Bernard Rees

Biological Sciences Faculty Publications

Anaerobic metabolism is recruited in vertebrates under conditions of intense exercise or lowered environmental oxygen availability (hypoxia), typically resulting in the accumulation of lactate in blood and tissues. Lactate will be cleared over time after the reoxygenation of tissues, eventually returning to control levels. Here, we present a laboratory exercise developed as part of an upper-level vertebrate physiology class that demonstrates the effects of exercise and hypoxia exposure on blood lactate in fish and the subsequent decrease in lactate during recovery. Typically, the results obtained by students demonstrate that both treatments cause significant increases in blood lactate concentrations (two to …