Life Sciences Commons^™

On Viperid (Serpentes: Sauria) Specimens Collected From Northeastern Anatolia, İbrahi̇m Baran, Cemal Varol Tok, Kurtuluş Olgun, Fatma İret, Azi̇z Avci

Turkish Journal of Zoology

Specimens of Vipera eriwanensis and Vipera kaznakovi collected from northeastern Anatolia were examined in terms of morphological characters and compared with the relevant references. The distribution ranges of Vipera eriwanensis and Vipera kaznakovi were extended in Turkey by collecting specimens from new localities.

The Oligochaeta (Annelida) Fauna Of Aksu Stream (Antalya), Soner Çapraz, Nai̇me Arslan

Turkish Journal of Zoology

The samples were collected from 10 stations from September 2002 to October 2003 with the purpose of determining the Oligochaete fauna of Aksu Stream (Antalya). Seventeen species of Oligochaeta were recorded, consisting of 7 species from the family Tubificidae, and 10 species from Naididae. All of them are reported from Aksu Stream for the first time.

Some New Xylophagous Species On Fig Trees (Ficus Carica Cv. Calymirna L.) In Aydın, Turkey, Tüli̇n Akşi̇t, İbrahi̇m Çakmak, Fatma Özsemerci̇

Turkish Journal of Zoology

Xylophagous insects, Bostrychidae, Buprestidae, Cerambycidae, Curculionidae and Scolytidae (Coleoptera), on fig trees in Aydın province, Turkey, were investigated in 2000 and 2001. Sixteen species of Coleoptera were collected, of which 8 are new records as fig pests in Turkey: Anthaxia cichorii Olivier, Agrilus roscidus Kiesenwetter, Acmaeodera (s.str.) flavolineata Laporte and Gory (Buprestidae), Stenopterus flavicornis Küster (Cerambycidae), Xyloperthella picea Olivier, Xylonites praeustus Germar, Scobicia chevrieri Villa (Bostrychidae) and Hypothenemus eruditus Westwood (Scolytidae). In addition, X. picea is the first record for the Turkish fauna. However, it was observed that Hypoborus ficus Erichson (Scolytidae), Hesperophanes griseus Fabricius (Cerambycidae), Scobicia chevrieri Villa and …

Two New Records Of Camerobiidae (Acari: Actinedida) For The Turkish Fauna, Kami̇l Koç

Turkish Journal of Zoology

Tycherobius polonicus Bolland, 1986 and Neophyllobius podocarpi Bolland, 1991, originally described in Poland and the USA, respectively, are recorded for the first time in Turkey. Their morphological characters and distributions are given. In addition, a key is given to the known genera of Camerobiidae from Turkey

The Histochemical And Ultrastructural Effects Of Cadmium On Mouse Edl Muscle, Fati̇me Geyi̇koğlu, Aysel Temelli̇, Özgen Vuraler, Hasan Türkez

Turkish Journal of Zoology

The histochemical and ultrastructural effects of cadmium (Cd) on the extensor digitorum longus (EDL) muscles of male mice were investigated. Two doses of Cd (0.1 and 1.0 x 10^{-4} M) were injected into the mice. The animals were killed at the end of 48 h and their EDL muscles excised. Three types of fibers (I, IIA and IIB) were described by the succinic dehydrogenase (SDH) method in the control groups. The mitochondrial and sarcotubular contents of the fibers were different. The histochemical and ultrastructural characteristics of the EDL muscles in mice given Cd did not differ from those of the …

Annual Review Of The World Pheasant Association 2004/2005, World Pheasant Association

Galliformes Specialist Group and Affiliated Societies: Reports and Other Materials

Chairman of Trustees' report, Dick Potts

Treasurer's report and accounts, Ian Hoggarth

Conservation activities in 2004/2005, Philip J. K. McGowan

WPA around the world: Highlights from the chapters

Grouse Specialist Group report, Ilse Storch

Megapode Specialist Group report, Rene Dekker Darryl N. Jones, and Gillian C. Baker

Partridge, Quail and Francolin Specialist Group report, John P. Carroll

Pheasant Specialist Group report, Peter J. Garson

Species Survey 2004, Philip J. K. McGowan

Re-introduction of Green Peafowl into Peninsular Malaysia, Gary Robbins and John Corder

Ten years of WPA:s South Asian Field Office, Rahul Kaul

Range expansion of grey francolin in the …

Nanosecond Pulsed Electric Fields: A New Stimulus To Activate Intracellular Signaling, Stephen J. Beebe, Karl H. Schoenbach

Bioelectrics Publications

When new technologies are introduced into the scientific community, controversy is expected and both excitement and disappointment enrich the lives of those who initiate the new ideas. It becomes the mission of the “inventors” to embrace the burden of proof to establish their ideas and convince the skeptics and disbelievers who will undoubtedly temper their enthusiasm and test their patience. While open mindedness is generally a scientific motto, those who review patents, manuscripts, and grants do not always readily practice it, even when the evidence is convincingly presented; old ideas and concepts often die hard. So it has been and …

Bioprospecting, Philip A. Reed

STEMPS Faculty Publications

The article discusses that the product applications of bioprospecting are almost limitless. This area of biotechnology has been labeled bioprospecting, and it is a practice that is creating worldwide controversy. Defined simply, bioprospecting is "scientific research that looks for a useful application, process, or product in nature." However, as with most biotechnologies, the definition does not address the complexities of bioprospecting. Archeologists are finding that some biotechnologies, such as the use of herbs for medicine and the use of fermentation and yeast in food products, date back 5,000 to 10,000 years (De Miranda, 2004). The four main categories of biotechnologies …

Mammal Abundance Indices In The Northern Portion Of The Great Basin, 1962-1993, Frederick F. Knowlton, Rebecca A. Bartel, L. Charles Stoddart

Wildland Resources Faculty Publications

Indices of abundance of selected mammals were obtained for two study areas within the Great Basin: the Idaho National Engineering and Environmental Laboratory, Idaho, and Curlew Valley, Utah, USA. Data collection occurred biannually 1962–1993, with varying durations among species and sites. Abundance indices were obtained for coyotes (Canis latrans), lagomorphs (primarily black-tailed jackrabbits, Lepus californicus), and eight species of rodents. Data were originally gathered as part of a long-term study of interactions among predator and prey populations, concentrating on aspects related to coyotes and black-tailed jackrabbits. Secondarily, these data are useful in portraying trends in mammal abundance …

Functional Response Of Six Indigenous Trichogrammatid Egg Parasitoids (Hymenoptera: Trichogrammatidae) In Kenya: Influence Of Temperature And Relative Humidity, Andrew Kalyebi, W. A. Overholt, F. Schulthess, J. M. Mueke, S. A. Hassan, S. Sithanantham

All Peer-Reviewed Publications

Laboratory tests were conducted to evaluate the functional responses of six species/strains of native Kenyan trichogrammatids using the factitious pyralid host, Corcyra cephalonica, under different temperature and relative humidity regimes. The objective was to identify promising species/strains for controlling the noctuid Helicoverpa armigera, a serious pest of vegetables in Kenya. The six species/strains of Trichogramma and Trichogrammatoidea represented collections from low (<700 m), mid (between 700 and 1200 m) and high (>1200 m) altitude locations. They were compared for parasitisation rates at six temperatures (10, 15, 20, 25, 30 and 35°C) and two relative humidity levels (40-50% and 70-80%), at five host egg densities (6, 12, 18, 24, and …

Iron In The Sargasso Sea (Bermuda Atlantic Time-Series Study Region) During Summer: Eolian Imprint, Spatiotemporal Variability, And Ecological Implications, Peter N. Sedwick, T. M. Church, A. R. Bowie, C. M. Marsay, S. J. Ussher, K. M. Achilles, P. J. Lethaby, R. J. Johnson, M. M. Sarin, D. J. Mcgillicuddy

OES Faculty Publications

We report iron measurements for water column and aerosol samples collected in the Sargasso Sea during July-August 2003 (summer 2003) and April-May 2004 (spring 2004). Our data reveal a large seasonal change in the dissolved iron (dFe) concentration of surface waters in the Bermuda Atlantic Time-series Study region, from ∼1-2nM in summer 2003, when aerosol iron concentrations were high (mean 10 nmol/m^-3), to ∼0.1-0.2nM in spring 2004, when aerosol iron concentrations were low (mean 0.64 nmol/m^-3). During summer 2003, we observed an increase of ∼0.6nM in surface water dFe concentrations over 13 days, presumably due to …

Rich Mesic Forests: Edaphic And Physiographic Drivers Of Community Variation In Western Massachusetts, J. Bellemare, G. Motzkin, D. R. Foster

Biological Sciences: Faculty Publications

Rich Mesic Forest, a Northeastern variant of the species-rich Mixed Mesophytic Forest association of eastern North America, is an Acer saccharum-dominated forest type typically associated with calcareous bedrock and nutrient-rich, mull soils. Rich Mesic Forest (RMF) is a priority for conservation in the Northeast due to its limited areal extent, high plant species richness, and numerous rare taxa, yet the community characteristics and environmental correlates of this forest type are incompletely understood. This study undertook a quantitative classification of RMF of the northeastern edge of the Berkshire Plateau in western Massachusetts. Cluster analysis of data from ten sites identified two …

Chemistry Of Surface Waters: Distinguishing Fine-Scale Differences In Sea Grass Habitats Of Chesapeake Bay, Emmanis Dorval, Cynthia M. Jones

OES Faculty Publications

We tested the hypothesis that the physical and chemical processes acting in sea grass habitats of the lower Chesapeake Bay are spatially structured and that dissolved elemental chemistry of sea grass-habitat surface waters have their own unique identity. We sampled surface waters from July to September 2001 in five sea grass habitats of the lower bay: Potomac, Rappahannock, York, Island (Tangier-Bloodsworth), and Eastern Shore. Dissolved Mg, Mn, Sr, and Ba concentrations were measured by sector field inductively coupled plasma-mass spectrometry. As expected, Mg, Sr, and Ba exhibited conservative behavior, but Mn exhibited nonconservative behavior along the salinity gradient. Spatial differences …

Biophysical Mechanisms Of Larval Fish Ingress Into Chesapeake Bay, Jonathan A. Hare, Simon Thorrold, Harvey Walsh, Christian Reiss, Arnoldo Valle-Levinson, Cynthia Jones

OES Faculty Publications

Selective tidal stream transport is hypothesized as a dominant mechanism by which larvae of marine animals move through estuarine openings. For larvae moving from the shelf to estuarine habitats, selective tidal stream transport proposes that larvae are higher in the water column during flood tide and lower in the water column during ebb tide. Although a number of studies conclude that selective tidal stream transport is the mechanism responsible for larval ingress, few studies consider alternative mechanisms or consider passive explanations for tidal patterns in larval distributions. We examined the biophysical mechanisms responsible for larval ingress into Chesapeake Bay using …

A Unique Seasonal Pattern In Phytoplankton Biomass In Low-Latitude Waters In The South China Sea, Chun-Mao Tseng, George T. F. Wong, I.-I. Lin, C.-R. Wu, K.-K. Liu

OES Faculty Publications

A distinctive seasonal pattern in phytoplankton biomass was observed at the South East Asian Time series Study (SEATS) station (18°N, 116°E) in the northern South China Sea (SCS). Surface chlorophyll-a, depth integrated chlorophyll-a and primary production were elevated to 0.3 mg/m³, ~35 mg/m² and 300 mg-C/m²/d, respectively, in the winter but stayed low, at 0.1 mg/m³, ~15 mg/m² and 110 mg-C/m²/d as commonly found in other low latitude waters, in the rest of the year. Concomitantly, soluble reactive phosphate and nitrate+nitrite in the mixed layer also became …

High-Temperature Fluorescent In Situ Hybridization For Detecting Escherichia Coli In Seawater Samples, Using Rrna-Targeted Oligonucleotide Probes And Flow Cytometry, Ying Zhong Tang, Karina Yew Hoong Gin, Tok Hoon Lim

OES Faculty Publications

Fluorescence in situ hybridization (FISH) is a widely used method to detect environmental microorganisms. The standard protocol is typically conducted at a temperature of 46°C and a hybridization time of 2 or 3 h, using the fluorescence signal intensity as the sole parameter to evaluate the performance of FISH. This paper reports our results for optimizing the conditions of FISH using rRNA-targeted oligonucleotide probes and flow cytometry and the application of these protocols to the detection of Escherichia coli in seawater spiked with E. coli culture. We obtained two types of optimized protocols for FISH, which showed rapid results with …

The Effect Of Growth Rate, Phosphorus Concentration, And Temperature On N-2 Fixation, Carbon Fixation, And Nitrogen Release In Continuous Cultures Of Trichodesmium Ims101, Margaret R. Mulholland, Peter W. Bernhardt

OES Faculty Publications

With the use of continuous culture systems, rates of dinitrogen (N₂) and carbon (C) fixation and nitrogen (N)- and C-based doubling times were assessed in Trichodesmium IMS101 growing exponentially at steady state dilution rates of 0.10, 0.20, and 0.33 d^-1 (doubling times of 10, 5, and 3 d - within the range reported for natural populations). Rates of C fixation, N₂ fixation, and N release were examined in replicate culture systems with several techniques. Biomass-specific C uptake varied little with population doubling time, but N₂ fixation and N release varied markedly among treatments. Total daily …

Do Viruses Affect Fecundity And Survival Of The Copepod Acartia Tonsa Dana?, Lisa A. Drake, Fred C. Dobbs

OES Faculty Publications

Naturally occurring viruses are extremely abundant in aquatic systems, and they infect bacteria, cyanobacteria, prokaryotic and eukaryotic phytoplankton, heterotrophic nanoflagellates, fish and mammals. Viral infections of single-celled organisms have been studied intensively in the past decade, but little is known about the effects of viruses on aquatic metazoans, other than for some economically important species. Because zooplankton assemblages are often dominated in number and biomass by copepods, we used them as model organisms to study the effects of naturally occurring viruses on higher trophic levels. We attempted to induce viral infection in laboratory-reared cultures of the estuarine copepod Acartia tonsa …

Ridding Ships' Ballast Water Of Microorganisms, Fred C. Dobbs, Andrew Rogerson

OES Faculty Publications

( First paragraph) A complex assemblage of microorganisms exists in nearly every aquatic system on earth. In lakes and oceans, every milliliter of water contains about 10² protists (single-celled eukaryotes), 10⁶ bacteria, and 10⁷–10⁹ viruses. Therefore, billions of microorganisms inevitably enter ships’ ballast tanks during normal operations. It has been argued that microorganisms must certainly be frequent invaders of coastal ecosystems, given the high densities of bacteria and viruses in ballast water—10⁸ and 10⁹ organisms per liter, respectively (1)—their potentially high reproductive rates, broad tolerances to physical conditions, and ability to form resting …

Evaluation Of Human Papillomavirus And Chlymdia Tachomatis Infections In The Irish Female Population: Determination Of Prevalence In Adults U Ndergoing Opportunistic Cervical Screening, Helen Keegan

Doctoral

Human papillomaviruses and Chlamydia trachomatis are two of the most common sexually transmitted infections worldwide. They can be detected using urine, swab and cervical scrapings from the anogenital region. Liquid-based cervical cytology is fast becoming the method of choice for the preparation of cervical smears, with the major advantage of extra cellular material from which nucleic acids can be extracted and molecular tests performed. In this project, nucleic acid based methods for the detection of HPV and C. trachomatis and the quantitation and typing of HPV from PreservCyt cervical material were established and applied in an epidemiological study of the …

A Fossil Reef From The Last Interglacial, Western Australia, Benjamin J. Greenstein, John M. Pandolfi, David R. Blakeway

Arts & Sciences Faculty Publications

We report an initial investigation of a Devils Point Event (DPE) style surface exposed approximately 1.5 m above present sea level in a spectacularly preserved reef sequence in southern Exmouth Gulf, Western Australia.

Omnivory By The Small Cosmopolitan Hydromedusa Aglaura Hemistoma, Sean Colin, John H. Costello, William M. Graham, John Higgins Iii

Arts & Sciences Faculty Publications

We investigated the feeding of the small hydromedusa, Aglaura hemistoma (bell diameter < 4 mm), to determine if it occupies a trophic position similar to that of large medusae. Feeding was examined using gut-content analysis of preserved and unpreserved medusae and by analyzing prey-capture events using microvideographic techniques. Analysis of gut contents and prey-capture events revealed that A. hemistoma fed heavily on protistan prey and that it possessed a prey-capture mechanism, specifically a feeding current,that is effective at entraining and capturing protists with low motility. We suggest that many species of small hydromedusae possess prey-capture mechanisms adapted to capture small protistan prey and that many of these small hydromedusae feed omnivorously on microplanktonic prey. The trophic roles of small hydromedusae in different systems are not understood and more studies are needed. However, based on their often high abundances and the cosmopolitan nature, if small hydromedusae …

Flow Patterns Generated By Oblate Medusan Jellyfish: Field Measurements And Laboratory Analyses, John O. Dabiri, Sean Colin, John H. Costello, Morteza Gharib

Arts & Sciences Faculty Publications

Flow patterns generated by medusan swimmers such as jellyfish are known to differ according the morphology of the various animal species. Oblate medusae have been previously observed to generate vortex ring structures during the propulsive cycle. Owing to the inherent physical coupling between locomotor and feeding structures in these animals, the dynamics of vortex ring formation must be robustly tuned to facilitate effective functioning of both systems. To understand how this is achieved, we employed dye visualization techniques on scyphomedusae (Aurelia aurita) observed swimming in their natural marine habitat. The flow created during each propulsive cycle consists of …

Prorocentrum Minimum(Clone Exuv) Is Nutritionally Insufficient, But Not Toxic To The Copepod Acartia Tonsa, Hans G. Dam, Sean Colin

Arts & Sciences Faculty Publications

This study tested whether the dinoflagellate Prorocentrum minimum is nutritionally insufficient or toxic to the copepod Acartia tonsa. Experiments were carried out with adult female A. tonsa and the P. minimum clone Exuv, both isolated from Long Island Sound. Initially, the functional and numerical responses of A. tonsa feeding on exponentially growing P. minimum cells were characterized. These experiments revealed that A. tonsa readily ingested P. minimum cells, up to the equivalent of 200% of body carbon day⁻¹, but egg production was relatively low, with a maximum egg production rate of 22% of body carbon day …

Real-Time Reverse Transcription Pcr For Detection And Quantitative Analysis Of Equine Influenza Virus., Michelle Quinlivan, Eugene Dempsey, Fergus Ryan, Sean Arkins, Ann Cullinnane

Articles

Equine influenza is a cause of epizootic respiratory disease of the equine. The detection of equine influenza virus using real-time Light Cycler reverse transcription (RT)-PCR technology was evaluated over two influenza seasons with the analysis of 171 samples submitted for viral respiratory disease. Increased sensitivity was found in overall viral detection with this system compared to Directigen Flu A and virus isolation, which were 40% and 23%, respectively, that of the RT-PCR. The assay was also evaluated as a viable replacement for the more traditional methods of quantifying equine influenza virus, 50% egg infectious dose and 50% tissue culture infectious …

Spontaneous Alternating Behavior In Paramecium Caudatum And Paramecium Multimicronucleatum, Nyron K. A. Bovell

College of Graduate Studies: Theses & Dissertations (1964–2006)

Spontaneous alternating behavior (SAB) describes the tendency of an organism to spontaneously select the unfamiliar direction in a two choice situation. Paramecium is the only microscopic genus in which SAB has been studied. The two earlier studies regarding SAB in Paramecium have come to conclusive, but diametrically opposed results. Designing a single new experiment that incorporates the critical differences in the designs of both studies may help to clarify the results from these earlier studies, and provide an excellent opportunity to better understand the factors that influence SAB.

The overall objective of this research project was to determine whether or …

Characterisation Of The Cinnamyl Alcohol Dehydrogenase From Helicobacter Pylori, Blanaid Mee

Doctoral

Cinnamyl alcohol dehydrogenases (CAD; 1.1.1.195) catalyse the conversion of p-hydroxy-cinnamaldehydes to their corresponding alcohols leading to the biosynthesis of lignin in plants. Outside of plants their role is less well defined. The cinnamyl alcohol dehydrogenase from H. pylori (HpCAD) has been cloned and produced in E. coli and characterised for substrate specificity. The enzyme is a monomer of 42.5 kDa found predominantly in the cytosol of the bacterium. It is specific for NADP(H) as cofactor and has a broad substrate specificity for alcohol and aldehyde substrates. Its substrate specificity is similar to the well-characterised plant enzymes. The best alcohol substrate …

Efficacy Of Innovative Anti-Microbial Decontamination Of Minimally Processed Vegetables, Christina Busquets I Tortosa

Masters

Chlorine has widespread use commercially as a disinfectant wash for raw vegetables. However, it is an extremely corrosive gas and it may have severe health and environmental implications. The aim of this thesis was to find safe, alternative decontamination treatments for ready-to-eat Iceberg lettuce. The efficacy of 1% acetic acid, 2% citric acid; calcium lactate concentrations of 0.5%, 1.5%, 2.5% and 3% at wash temperature of 4,25 and 50°C, ozone alone (1 mg 1-1) and in combination with calcium lactate (2.5%) were compared with chlorine as decontaminating treatments. Microbiological analyses were performed following decontamination treatments using the pour plate method …

New Insights Into Bile Acid Amidation, Mary Hunt, Eithne O'Shea, Karianne Solaas, Bengt Kase, Stefan Alexson

Articles

No abstract provided.

Interactive Anatomy Online, Jennifer Leopold, Thomas Hoeft, Anne M. Maglia

Computer Science Faculty Research & Creative Works

The scientific community and general public can best take advantage of the benefits of 3D digital reconstructions if they are stored in a Web-accessible, easy-to-access database. We describe MorphologyNet/sup /spl copy// a Web-based digital library of realistic, 3D interactive and customizable images of anatomy currently in development at the University of Missouri-Rolla.