Life Sciences Commons^™

Carotenoid Availability Affects The Development Of A Colour-Based Mate Preference And The Sensory Bias To Which It Is Genetically Linked, Gregory F. Grether, Gita R. Kolluru, F. Helen Rodd, Jennifer De La Cerda, Kaori Shimazaki

Biological Sciences

Regardless of their origins, mate preferences should, in theory, be shaped by their benefits in a mating context. Here we show that the female preference for carotenoid colouration in guppies (Poecilia reticulata) exhibits a phenotypically plastic response to carotenoid availability, confirming a key prediction of sexual selection theory. Earlier work indicated that this mate preference is genetically linked to, and may be derived from, a sensory bias that occurs in both sexes: attraction to orange objects. The original function of this sensory bias is unknown, but it may help guppies find orange-coloured fruits in the rainforest streams of …

A Method Of Precise Mrna/Dna Homology-Based Gene Structure Prediction, Alexander Churbanov, Mark Pauley, Daniel Quest, Hesham Ali

Information Systems and Quantitative Analysis Faculty Publications

Background: Accurate and automatic gene finding and structural prediction is a common problem in bioinformatics, and applications need to be capable of handling non-canonical splice sites, microexons and partial gene structure predictions that span across several genomic clones.

Results: We present a mRNA/DNA homology based gene structure prediction tool, GIGOgene. We use a new affine gap penalty splice-enhanced global alignment algorithm running in linear memory for a high quality annotation of splice sites. Our tool includes a novel algorithm to assemble partial gene structure predictions using interval graphs. GIGOgene exhibited a sensitivity of 99.08% and a specificity of 99.98% on …

Corn Stalk Nitrate Concentration Profile, W. Wilhelm, G. E. Varvel, J. S. Schepers

United States Department of Agriculture-Agricultural Research Service / University of Nebraska-Lincoln: Faculty Publications

The end-of-season nitrate test provides a method of assessing the N available to the corn (Zea mays L.) crop during the latter part of the season. This study was conducted to determine how stalk nitrate test results and interpretations are affected by sample composition. Stalks were collected from three filed sites and separated into phytomers (node plus internode above), which were subdivided into three or five segments after length was measured. Nitrate-N concentration of phytomers decreased linearly from the soil to the ear. Within a phytomer, segments also decreased acropetally (from base to apex). Node tissue NO₃-N …

Corn Stalk Nitrate Concentration Profile, Wally Wilhelm, Gary E. Varvel, James S. Schepers

United States Department of Agriculture-Agricultural Research Service / University of Nebraska-Lincoln: Faculty Publications

The end-of-season stalk nitrate test provides a method of assessing the N available to the corn (Zea mays L.) crop during the latter part of the season. This study was conducted to determine how stalk nitrate test results and interpretations are affected by sample composition. Stalks were collected from three field sites and separated into phytomers (node plus internode above), which were subdivided into three or five segments after length was measured. Nitrate-N concentration of phytomers decreased linearly from the soil to the ear. Within a phytomer, segments also decreased acropetally (from base to apex). Node tissue NO_{3 …}

Morus Rubra L., Gordon C. Tucker

Specimens by Name

No abstract provided.

Acer Negundo L., Gordon C. Tucker

Specimens by Name

No abstract provided.

Spiranthes Cernua (L.) Rich., Gordon C. Tucker

Specimens by Name

No abstract provided.

Red Rock Desert Learning Center Core Group Meeting: October 18, 2005, Red Rock Desert Learning Center

Reports (RRLC)

1. Introductions & Announcements (5 min.)
2. Approval of Minutes from September 20, 2005 Meeting (5 min.)
3. Curriculum Update – Jeanne Klockow (15 min.)
4. Review of Project Schedule – Michael Reiland (10 min.)
   A. Utilities
   B. Water Line
   C. Parking
   D. Operator
5. Standing Reports (15 minutes)
   A. Line and Space Architects – Les Wallach/Henry Tom
   B. BLM Capital Improvements – Michael Reiland
6. Committee Reports (5 min.)
   A. Building Committee – Angie Lara
   B. Design Oversight – David Frommer
   C. Educational Programs – Paul Buck
   D. Fund-raising and Partnerships – Blaine Benedict
   E. NEPA – Michael Johnson
   F. Operations – Jackson Ramsey
   G. …

When The Public Does Not Have A Right To Know: How The California Public Records Act Is Deterring Bioscience Research And Development, Nader Mousavi, Matthew J. Kleiman

Duke Law & Technology Review

Many bioscience firms collaborate with public research universities to conduct innovative research through sponsored research agreements. Companies sponsoring this research usually require strict confidentiality from their academic partners in order to protect sensitive information that, if revealed, could put them at a competitive disadvantage and threaten their ability to obtain future patents. Yet, ambiguous disclosure requirements in the California Public Records Act preclude California's public research universities from guaranteeing that proprietary information provided in connection with sponsored research agreements will remain confidential. Entering into such agreements with public universities in California is therefore a risky proposition for the sponsors. This …

Crystal Structures Of Oxidized And Reduced Mitochondrial Thioredoxin Reductase Provide Molecular Details Of The Reaction Mechanism, Ekaterina I. Biterova, Anton A. Turanov, Vadim N. Gladyshev, Joseph J. Barycki

Vadim Gladyshev Publications

Thioredoxin reductase (TrxR) is an essential enzyme required for the efficient maintenance of the cellular redox homeostasis, particularly in cancer cells that are sensitive to reactive oxygen species. In mammals, distinct isozymes function in the cytosol and mitochondria. Through an intricate mechanism, these enzymes transfer reducing equivalents from NADPH to bound FAD and subsequently to an active-site disulfide. In mammalian TrxRs, the dithiol then reduces a mobile C-terminal selenocysteine- containing tetrapeptide of the opposing subunit of the dimer. Once activated, the C-terminal redox center reduces a disulfide bond within thioredoxin. In this report, we present the structural data on a …

Surveying The Stakeholder: Understanding Public Perception Of The New Hampshire Estuaries Project, New Hampshire Estuaries Project

PREP Reports & Publications

The New Hampshire Estuaries Project (NHEP) commissioned The UNH Survey Center to conduct two surveys to assist in the implementation and evaluation of the 2004 NHEP Strategic Communication Plan. Both surveys were completed and the results are informing outreach activities. The attitudinal survey of the Planning Board members and Conservation Commissioners in coastal watershed communities suggested that there is moderate familiarity and awareness of the NHEP, with 57% of respondents expressing some level of familiarity with the NHEP. Respondents who live in Zone A seem to be much more likely to be familiar with the NHEP (13% are very familiar; …

Incidence Of Splayleg Pigs In Nebraska Litter Size Selection Lines, J. W. Holl, R. K. Johnson

Department of Animal Science: Faculty Publications

Genetic parameters for the splayleg (SL) condition were estimated from 37,673 records of pigs from six lines derived from a Large White–Landrace base population. Random selection for 22 generations was practiced in Lines C1 and C2. Line C2 was derived from C1 at Generation 8. Selection lines were as follows: 1) Line I, selected 11 generations for an index of ovulation rate and embryonic survival followed by 11 generations of selection for litter size; 2) Line IOL, derived from Line I at Generation 8 and which underwent eight generations of two-stage selection for ovulation rate and number of fully formed …

Potential Of Modis Evi And Surface Temperature For Directly Estimating Per-Pixel Ecosystem C Fluxes, Abdullah Rahman, Daniel A. Sims, Vicente D. Cordova, Bassil Z. El-Masri

School of Earth, Environmental, & Marine Sciences Faculty Publications

We tested the potential of estimating per-pixel gross primary production (GPP) directly from the MODIS enhanced vegetation index (EVI) and respiration directly from MODIS surface temperature (MOD11). Carbon flux data were obtained from 10 eddy covariance tower sites representing a wide range of North American vegetations. The correlation between across-site tower GPP and EVI was comparable (r = 0.77) to that between tower GPP and MOD17-GPP (r = 0.73), suggesting that EVI could be used to provide reasonably accurate direct estimates of GPP on a truly per-pixel basis. There was also a strong relationship (r2 = 0.67) between respiration and …

Verbena Urticifolia L., Gordon C. Tucker

Specimens by Name

No abstract provided.

When Should Judges Admit Or Compel Genetic Tests?, Diane E. Hoffmann, Karen H. Rothenberg

Faculty Scholarship

No abstract provided.

Which Drugs Cause Cancer?, Andrew Knight, Jarrod Bailey, Jonathan Balcombe

Experimentation Collection

Animal tests yield misleading results.

Computing For Human Experience And Wellness, Amit P. Sheth

Kno.e.sis Publications

No abstract provided.

Specific Heat And Thermodynamic Properties Of Metallic Systems: Instrumentation And Analysis, Brian E. Lang

Theses and Dissertations

A small-scale adiabatic calorimeter has been constructed as part of a larger project to study nano-particles and to facilitate specific heat measurements on samples where it is difficult to obtain enough material to run on the current large-scale adiabatic apparatus. This calorimeter is designed to measure sample sizes of less than 0.8 cc over a temperature range from 13 K to 350 K. Specific heat results on copper, sapphire, and benzoic acid show the accuracy of the measurements to be better than ±0.4% for temperatures higher than 50 K. The reproducibility of these measurements is generally better than ±0.25%. Experimental …

Smokejumper Obituary: Secrist, Dewey W. (Missoula 1948), National Smokejumper Association

Smokejumper Obituaries

No abstract provided.

Ligustrum Vulgare L., John E. E. Ebinger

Specimens by Name

No abstract provided.

Reconstructability Analysis As A Tool For Identifying Gene-Gene Interactions In Studies Of Human Diseases: Ieee Version, Martin Zwick, Stephen Shervais, Patricia Kramer

Complex Systems Faculty Publications and Presentations

There are a number of human diseases that are caused by the epistatic interaction of multiple genes. Detecting these interactions with standard statistical tools is difficult, because there may be an interaction effect, but minimal or no main effect. Reconstructability analysis uses Shannon’s information theory to detect relationships between variables in categorical datasets. We apply reconstructability analysis to data generated by five different models of gene-gene interaction, with heritability levels from 0.053 to 0.008, using 200 controls and 200 cases. We find that even with heritability levels as low as 0.008, and with the inclusion of 50 non-associated genes in …

A Numerical Study Of The Western Cosmonaut Polynya In A Coupled Ocean-Sea Ice Model, T.G. Prasad, Julie L. Mcclean, Elizabeth C. Hunke, Albert J. Semtner, Detelina Ivanova

Faculty Publications

[1] Employing results from a 0.4 degrees, 40-level fully global, coupled ocean - sea ice model, we investigated the role of physical processes emanating from atmosphere, ocean, and ice in the initiation, maintenance, and termination of a sensible heat polynya with a focus on the western Cosmonaut polynya that occurred during May - July 1999. The Cosmonaut polynya first appeared in early May 1999 in the form of an ice-free embayment, transformed into an enclosed polynya on 5 - 9 July, and disappeared by late July, when the ice from the surrounding regions began to encircle the embayment. Except for …

Remotely Sensed Data To Map Forest Age Class By Cover Type In East Texas, Daniel Unger, I-Kuai Hung, Jeffrey M. Williams, James Kroll, Dean W. Coble, Jason Grogan

Faculty Publications

• Remote sensing in conjunction with ground truthing, can accurately quantify forest composition and age distributions in East Texas.
• Method uses standardized and readily available data available to the general public.
• Method was shown to be effective in terms of time and cost.

Endangered And Threatened Wildlife And Plants; Determination Of Endangered Status For The Salt Creek Tiger Beetle (Cicindela Nevadica Lincolniana)

Endangered Species Bulletin

We, the U.S. Fish and Wildlife Service (Service), determine endangered status for the Salt Creek tiger beetle (Cicindela nevadica lincolniana), pursuant to the Endangered Species Act (Act) of 1973, as amended (Act). This species is endemic to the saline wetlands of eastern Nebraska (NE) and associated streams in the northern third of Lancaster County and southern margin of Saunders County. Only three small populations of this subspecies remain, and the known adult population size in 2005 was only 153 individuals. This final rule extends Federal protection and recovery provisions of the Act to the Salt Creek tiger beetle.

Callose (Β-1,3 Glucan) Is Essential For Arabidopsis Pollen Wall Patterning, But Not Tube Growth, Rob Swanson

Biology Faculty Publications

Background: Callose (β-1,3 glucan) separates developing pollen grains, preventing their underlying walls (exine) from fusing. The pollen tubes that transport sperm to female gametes also contain callose, both in their walls as well as in the plugs that segment growing tubes. Mutations in CalS5, one of several Arabidopsis β-1,3 glucan synthases, were previously shown to disrupt callose formation around developing microspores, causing aberrations in exine patterning, degeneration of developing microspores, and pollen sterility. Results: Here, we describe three additional cals5 alleles that similarly alter exine patterns, but instead produce fertile pollen. Moreover, one of these alleles (cals5-3) resulted in the …

Impact Of Bythotrephes Invasion On Zooplankton Communities In Acid-Damaged And Recovered Lakes On The Boreal Shield, Angela L. Strecker, Shelley E. Arnott

Environmental Science and Management Faculty Publications and Presentations

Invasive species introductions into freshwater ecosystems have had a multitude of effects on aquatic communities. Few studies, however, have directly compared the impact of an invader on communities with contrasting structure. Historically high levels and subsequent reductions of acid deposition have produced landscapes of lakes of varying acidity and zooplankton communitystructure. We conducted a 30-day enclosure experiment in Killarney Provincial Park, Ontario, Canada, to test the effects ofBythotrephes longimanus, an invasive invertebrate predator, on two contrasting zooplankton communities at different stages of recovery from acidification: recovered and acid damaged. Bythotrephes significantly decreased zooplankton biomass and abundance in both communities but …

Smokejumper Obituary: Martinez, Jerry M. (Redding 1977), National Smokejumper Association

Smokejumper Obituaries

No abstract provided.

Seven Hills Winery Fall 2005 Newsletter, Casey Mcclellan

Seven Hills Winery Documents

In this newsletter published by Seven Hills Winery, winemaker Casey McClellan reports great weather has produced a vintage that could potentially rival the excellence of the 1999 vintage at Seven Hills Winery in Walla Walla, Washington. In this newsletter, bottlings are described by place and appellation rather than by vintage to allow consumers more insight into how the wines are made. The newsletter also includes information about the Holiday Barrel Tasting in December.

Significant Accomplishments And Milestones: 2002-2005, Arthur Temple College Of Forestry And Agriculture

eBooks

No abstract provided.

Multi-Source Image Classification, Hillary Tribby, James Kroll, Daniel Unger, I-Kuai Hung, Hans Michael Williams

Faculty Presentations

Since multi-source image classifications have the ability to exceed single source processes, such as traditional unsupervised classification methods, this paper will present the integration of four types of data: Lidar, elevation, multispectral and thermal. Using multi-source data and maximum likelihood classification methodology, as well as all possible permutations of data types, this paper will discuss ways to increase accuracy assessments of forested areas in east Texas and find the best combination of data sources.