Life Sciences Commons^™

Semiparametric Quantitative-Trait-Locus Mapping: I. On Functional Growth Curves, Ying Qing Chen, Rongling Wu

U.C. Berkeley Division of Biostatistics Working Paper Series

The genetic study of certain quantitative traits in growth curves as a function of time has recently been of major scientific interest to explore the developmental evolution processes of biological subjects. Various parametric approaches in the statistical literature have been proposed to study the quantitative-trait-loci (QTL) mapping of the growth curves as multivariate outcomes. In this article, we view the growth curves as functional quantitative traits and propose some semiparametric models to relax the strong parametric assumptions which may not be always practical in reality. Appropriate inference procedures are developed to estimate the parameters of interest which characterise the possible …

Semiparametric Quantitative-Trait-Locus Mapping: Ii. On Censored Age-At-Onset, Ying Qing Chen, Chengcheng Hu, Rongling Wu

U.C. Berkeley Division of Biostatistics Working Paper Series

In genetic studies, the variation in genotypes may not only affect different inheritance patterns in qualitative traits, but may also affect the age-at-onset as quantitative trait. In this article, we use standard cross designs, such as backcross or F2, to propose some hazard regression models, namely, the additive hazards model in quantitative trait loci mapping for age-at-onset, although the developed method can be extended to more complex designs. With additive invariance of the additive hazards models in mixture probabilities, we develop flexible semiparametric methodologies in interval regression mapping without heavy computing burden. A recently developed multiple comparison procedures is adapted …

Center For Grassland Studies Newsletter, Summer 2004, Volume 10, No. 3

Center for Grassland Studies: Newsletters

WILD Nebraska Grasslands by Bill Vodehnal, Nebraska Game and Parks Commission

High School Students Improve Their Game While Having Fun at UNL Golf Camp

Multiple Dimensions of a Strong Professional Golf Management Program by Charles Francis, Department of Agronomy and Horticulture, UNL

CGS Advisory Council Tours Northeast Nebraska

Groundwater Nitrates Being Used to Fertilize Intensive Grazed Pasture

Grazing and Grassland Management Is Theme of Wildlife Society Meeting

Regional Researchers Collaborate to Improve Grazing Systems

UNL Researchers Study Seed Production of Eastern Red Cedar

Range Management Focus of Beef Basics VI

Still Time to See Exhibition – Listening to the Prairie …

Plant Disease Management, Larry A. Sagers

All Archived Publications

No abstract provided.

Responses Of Nesting Bobolinks (Dolichonyx Oryzivorus) To Habitat Edges, Eric K. Bollinger, Thomas A. Gavin

Faculty Research & Creative Activity

T.-Avoidance of habitat edges may be contributing to reduced densities of grass- land birds in small habitat patches. Nest densities for grassland-nesting Bobolinks (Dolichonyx oryzivorus) were much lower than expected within 25 m of forest edges at three sites in New York, and that pattern ("edge avoidance") extended to 100 m at one site. Nests located within 50 m of forest or wooded hedgerow edges had lower daily survival rates, compared with nests >100 m from any habitat edge. Bobolinks tended to move away from forest edges when renest- ing after nest failure; that pattern was especially evident in females …

Workflow Management Systems And Erp Systems: Differences, Commonalities, And Applications, Jorge Cardoso, Robert P. Bostrom, Amit P. Sheth

Kno.e.sis Publications

Two important classes of information systems, Workflow Management Systems(WfMSs) and Enterprise Resource Planning (ERP) systems, have been used to support e-business process redesign, integration, and management. While both technologies can help with business process automation, data transfer, and information sharing, the technological approach and features of solutions provided by WfMS and ERP are different. Currently, there is a lack of understanding of these two classes of information systems in the industry and academia, thus hindering their effective applications. In this paper, we present a comprehensive comparison between these two classes of systems. We discuss how the two types of systems …

Acer Negundo L., Gordon C. Tucker

Specimens by Name

No abstract provided.

Morus Rubra L., Gorden C. Tucker

Specimens by Name

No abstract provided.

Responses Of Nesting Bobolinks (Dolichonyx Oryzivorus) To Habitat Edges, Eric Bollinger, Thomas Gavin

Faculty Research & Creative Activity

T.-Avoidance of habitat edges may be contributing to reduced densities of grass- land birds in small habitat patches. Nest densities for grassland-nesting Bobolinks (Dolichonyx oryzivorus) were much lower than expected within 25 m of forest edges at three sites in New York, and that pattern ("edge avoidance") extended to 100 m at one site. Nests located within 50 m of forest or wooded hedgerow edges had lower daily survival rates, compared with nests >100 m from any habitat edge. Bobolinks tended to move away from forest edges when renest- ing after nest failure; that pattern was especially evident in females …

Immunoglobulin Heavy-Chain Receptor Editing Is Observed In The Nod/Scid Model Of Human B-Cell Development, G. R. Kolar, J. D. Capra

Biological Sciences Faculty Research & Creative Works

Receptor editing and receptor revision are the two mechanisms of antibody diversity that result in either complete V-gene replacement or the formation of hybrid V genes. We do not yet understand how this process unfolds, because they are rare and difficult to study in vivo. In this study, we describe a family of VH4-34:VH4-61 hybrids isolated from a human B-cell chimeric non-obese diabetic/severe combined immunodeficient mouse. The observation of hybrid immunoglobulin sequences in human B cells that developed in this model system makes it useful for the study of this mechanism of diversification and tolerance.

Immunoglobulin Heavy-Chain Receptor Editing Is Observed In The Nod/Scid Model Of Human B-Cell Development, G. R. Kolar, J. D. Capra

Biological Sciences Faculty Research & Creative Works

Receptor editing and receptor revision are the two mechanisms of antibody diversity that result in either complete V-gene replacement or the formation of hybrid V genes. We do not yet understand how this process unfolds, because they are rare and difficult to study in vivo. In this study, we describe a family of VH4-34:VH4-61 hybrids isolated from a human B-cell chimeric non-obese diabetic/severe combined immunodeficient mouse. The observation of hybrid immunoglobulin sequences in human B cells that developed in this model system makes it useful for the study of this mechanism of diversification and tolerance.

Responses Of Nesting Bobolinks (Dolichonyx Oryzivorus) To Habitat Edges, Eric K. Bollinger, Thomas A. Gavin

Faculty Research & Creative Activity

ABSTRACT.-Avoidance of habitat edges may be contributing to reduced densities of grassland birds in small habitat patches. Nest densities for grassland-nesting Bobolinks (Dolichonyx oryzivorus) were much lower than expected within 25m of forest edges at three sites in New York, and that pattern ("edge avoidance") extended to 100m at one site. Nests located within 50 m of forest or wooded hedgerow edges had lower daily survival rates, compared with nests >100m from any habitat edge. Bobolinks tended to move away from forest edges when renesting after nest failure; that pattern was especially evident in females that placed their first nest …

Genetic Analysis Of Song Dialect Populations In Puget Sound White-Crowned Sparrows, Jill Soha, Douglas Nelson, Patricia Parker

Biology Department Faculty Works

The relationship between cultural variation and biological variation among natural populations has been the subject of both theoretical and empirical study. Zonotrichia leucophrys pugetensis is one of three subspecies of white-crowned sparrow known to form geographical song dialects. We investigated whether these dialects correspond to genetic differences among Z. l. pugetensis populations. We compared allele frequencies at four microsatellite loci in males from 11 sites spanning six dialects over the subspecies' range in Oregon and Washington. Cluster analysis and genotype assignment tests indicated no tendency for sample sites within dialect areas to be genetically more similar than are sites from …

Learning Mixture Models With The Regularized Latent Maximum Entropy Principle, Shaojun Wang, Dale Schuurmans, Fuchun Peng, Yunxin Zhao

Kno.e.sis Publications

This paper presents a new approach to estimating mixture models based on a recent inference principle we have proposed: the latent maximum entropy principle (LME). LME is different from Jaynes' maximum entropy principle, standard maximum likelihood, and maximum a posteriori probability estimation. We demonstrate the LME principle by deriving new algorithms for mixture model estimation, and show how robust new variants of the expectation maximization (EM) algorithm can be developed. We show that a regularized version of LME (RLME), is effective at estimating mixture models. It generally yields better results than plain LME, which in turn is often better than …

Plan Of Management For The Point Quobba Fish Habitat Protection Area, Department Of Fisheries

Fisheries Management Papers

Point Quobba is a popular site for locals and tourists for beach activities, fishing and snorkelling, and as a place for children to learn to swim and gain an awareness of the marine environment. The marine life and habitats of the area are of considerable scientific and recreational interest and are highly valued in the local community. However, the area is at risk from a high level of use and from conflict between users - which is due to the area’s proximity to popular tourism sites, the boat ramp, camping and settlement areas.

Proposals For Community Discussion - A Quality Future For Recreational Fishing In The South Coast. A Five-Year Strategy For Managing The Recreational Component Of The Catch., South Coast Recreational Fishing Working Group.

Fisheries Management Papers

With a growing population and advances in technology, fishing pressure will continue to grow and anglers will become more efficient at targeting fish, particularly offshore demersal species such as blue groper, dhufish, red snapper, breaksea cod and queen snapper. There is also a clear need for recreational fisheries management to complement the existing management arrangements for the charter industry, and provide the necessary framework for recreational fishing to be incorporated into an integrated management framework with other fishing sectors.

Proposals For Community Discussion : A Quality Future For Recreational Fishing In The Pilbara/Kimberley : A Five-Year Draft Strategy For Managing The Recreational Component Of The Catch, Pilbara/Kimberley Recreational Fishing Working Group.

Fisheries Management Papers

With a growing population and advances in technology, fishing pressure will continue to grow and anglers will become more efficient at targeting fish - particularly offshore demersal species, such as tropical snappers and emperors. There is also a clear need for recreational fisheries management to complement the existing management arrangements for the charter industry, and provide the necessary framework for recreational fishing to be incorporated into an integrated management framework with other fishing sectors.

Fisheries Management Paper No.180 - Future Management Arrangements For Western Australia's Temperate Shark Fisheries., Jane Borg, R. Mcauley

Fisheries Management Papers

This paper provides a summary of the attributes of these temperate shark fisheries, and sets out the proposed objectives and the measures available to achieve them.

In summary, primary measures are aimed at the sustainability of dusky and whiskery sharks, with dusky sharks being of greater concern as their status is more critical. The final decision on management of these fisheries cannot compromise sustainability, not only because of the Department’s obligations under the Fish Resources Management Act, 1994, but also:

• national and international obligations associated with ecologically sustainable development;

• export accreditation under the Environmental Protection and Biodiversity Conservation …

Santa Clara Magazine, Volume 46 Number 1, Summer 2004, Santa Clara University

Santa Clara Magazine

8 - A PUZZLING PROFESSOR By Adam Breen. Byron Walden, an assistant professor of mathematics at SCU, draws on his knowledge of numerical analysis to create crossword puzzles for The New York Times.

10 - THE LAUNCHING PAD By Larry Sokoloff J.D. '92. Top government agencies, other universities, and companies are relying on the University's Robotics Systems Lab-and its students-to build and monitor satellites.

16 - A NOVEL TEAM By Kristin Lenore '04. The University's publishing partnership with Heyday Books aims to help preserve California's cultural legacy.

Responses Of Kit Foxes (Vulpes Macrotis) To Antipredator Blood-Squirting And Blood Of Texas Horned Lizards (Phrynosoma Cornutum), Wade Sherbrooke, George Middendorf, M Douglas

Department of Biology Faculty Publications

Six related studies were conducted with four captive juvenile Kit Foxes (Vulpes macrotis) to test the hypothesis that blood-squirting from eye-socket tissues by Texas Horned Lizards (Phrynosoma cornutum) is a canid antipredator defense. In 16 trials, naive “hungry” foxes killed and ate adult Yarrow's Spiny Lizards (Sceloporus jarrovii; eight of eight trials) slightly more frequently than adult P. cornutum (six of eight trials). Adverse responses by foxes (head shaking) were seen in five of six trials in which Phrynosoma squirted blood. Later these experienced foxes, fed ad libitum, killed and ate mice (eight of eight trials) while largely ignoring P. …

Discovery Of Web Services In A Federated Registry Environment, Kaarthik Sivashanmugam, Kunal Verma, Amit P. Sheth

Kno.e.sis Publications

The potential of a large scale growth of private and semi-private registries is creating the need for an infrastructure which can support discovery and publication over a group of autonomous registries. Recent versions of UDDI have made changes to accommodate interactions between distributed registries. In this paper, we discuss METEOR-S Web service Discovery Infrastructure, which provides an ontology-based infrastructure to access a group of registries that are divided based on business domains and grouped into federations. We also discuss how Web service discovery is carried out within a federation.

A High -Order Finite Difference Method For Solving Bioheat Transfer Equations In Three-Dimensional Triple -Layered Skin Structure, Haofeng Yu

Doctoral Dissertations

Investigations on instantaneous skin burns are useful for an accurate assessment of burn-evaluation and for establishing thermal protections for various purposes. Meanwhile, hyperthermia with radiation is important in the treatment of cancer, and it is essential for developers and users of hyperthermia systems to predict, and interpret correctly the biomass thermal and vascular response to heating. In this dissertation, we employ the well-known Pennes' bioheat transfer equation to predict the degree of skin burn and the temperature distribution in hyperthermia cancer treatment.

A fourth-order compact finite difference scheme is developed to solve Pennes' bioheat transfer equation in a three-dimensional single …

American Society Of Parasitologists Newsletter, V. 26, No. 2, Summer 2004, Scott Lyell Gardner

American Society of Parasitologists: Newsletter

An issue of the American Society of Parasitologists' quarterly newsletter, also called the Journal of Parasitology Newsletter.

Hexapod Herald - Vol. 16, No. 4, July 2004

Hexapod Herald and Other Entomology Department Newsletters

Contents:
Congratulations
Welcome
Farewell
Faculty News
Student News
From the Office
Grants
Museum News
Publications
Travel
Condolences
This & That
Hexapod Herald Archives

Nebraska Vine Lines, Vol. Vii, No. 4, July/August 2004.

Nebraska Vine Lines (2003–2006)

Contents

• Field Days Well Attended, Successful and Informative

• Soaring Wings Vineyard

• A HARVEST FIELD DAY

• Arbor Trails Winery

• 9th Annual Wine & Wings Blues Festival

Constraints On Adaptive Evolution: The Functional Trade-Off Between Reproduction And Fast-Start Swimming Performance In The Trinidadian Guppy (Poecilia Reticulata), Cameron K. Ghalambor, David N. Reznick, Jeffrey A. Walker Phd

Faculty Publications

The empirical study of natural selection reveals that adaptations often involve trade-offs between competing functions. Because natural selection acts on whole organisms rather than isolated traits, adaptive evolution may be constrained by the interaction between traits that are functionally integrated. Yet, few attempts have been made to characterize how and when such constraints are manifested or whether they limit the adaptive divergence of populations. Here we examine the consequences of adaptive life-history evolution on locomotor performance in the live-bearing guppy. In response to increased predation from piscivorous fish, Trinidadian guppies evolve an increased allocation of resources toward reproduction. These populations …

Defined Anaerobic Growth Medium For Studying Candida Albicans Basic Biology And Resistance To Eight Antifungal Drugs, Raluca Dumitru, Jacob M. Hornby, Kenneth W. Nickerson

Papers in Microbiology

The polymorphic fungus Candida albicans is one of the most versatile opportunistic pathogens in humans. Many organs of the human body are potential targets for infection by this pathogen, but infection is commonly localized in the gastrointestinal tract, an environment providing anaerobic growth conditions. We describe a chemically defined anaerobic growth medium for four strains of Candida albicans (A72, SC5314, MEN, and 10261). It is a defined liquid glucose-phosphate-proline growth medium supplemented with oleic acid, nicotinic acid, and ammonium chloride. The cells did not require or respond to added ergosterol. Oleic acid and nicotinic acid are growth factors which are …

Forage News [2004-07], Department Of Plant And Soil Sciences, University Of Kentucky

Forage News

• Warren Thompson Retires From ABI
• Seeded Bermudagrass: Filling in the Summer Slump
• Bill Talley Receives AFGC Merit Award
• Kentucky Students Win First AFGC Forage Bowl
• KFGC Field Day
• Yield and Persistence of Bolting-Resistant Cultivars of Chicory in Forage Plots
• Management of Beef Cattle to Alleviate Fescue Toxicosis
• Comparison of Three Tall Fescues Containing Novel Endophytes for Stocker Cattle Weight Gain
• Persistence of HiMag Tall Fescue Inoculated with Nontoxic Endophytes
• Upcoming Events

Preliminary Observations Of Global Ocean Mass Variations With Grace, D. Chambers, J. Wahr, R Steven Nerem

Marine Science Faculty Publications

Monthly estimates of the Earth's gravitational field from the GRACE mission are used to construct a time‐series of global mean ocean mass variations between August 2002 and December 2003. This time‐series is compared to a mean climatology determined from satellite altimeter measurements of global mean sea level corrected for the steric variation. The GRACE observations show a seasonal exchange of water mass with the continents of the same magnitude (∼8.5 mm) and phase (maximum in early‐ to mid‐October) as the steric‐corrected altimetry. This is one of the first direct validations over the ocean of the primary GRACE science mission to …

Animal Science Alumni Newsletter, Summer 2004

Department of Animal Science: Departmental News

Contents:

Setting the Cornerposts of Tomorrow’s Beef Industry
Animal Science Leadership Academy
From the Department Head’s Desk
Meat Scientists Share International Prize
Animal Science Alum CEO of Societies
BSE – Its Impact on the Cattle Industry
Federal CAFO Laws Change After 30 Years
Pork Industry Study Tour
Bud Britton Golf Classic
Animal Science Graduate Student Association (ASGSA)
ASGSA Activities
Animal Science Emeritus Professor Passes Away: Charles Henry “Charlie” Adams
College of Agriculture and Natural Resources Establishes Alumni Association
College of Agriculture and Natural Resources Establishes Alumni Association
Animal Science Faculty Member Passes Away: Dave C. Williams, Jr.
Animal Science Graduate …