Life Sciences Commons^™

The Effect Of The El Niño–Southern Oscillation Event On The Distribution Of Reef-Associated Labrid Fishes In The Eastern Pacific Ocean, Benjamin C. Victor, Gerard M. Wellington, D. Ross Robertson, Benjamin I. Ruttenberg

Biological Sciences

We surveyed the labrid fishes of the eastern Pacific ocean at multiple sites before, during, and after the 1997–98 ENSO event. Our observations showed that reef fish communities in general did not appear to change markedly as a result of the ENSO. Recruitment of labrids at the Galápagos Islands, Clipperton Atoll and Baja California was generally high near the end of the ENSO, indicating no negative effect on populations. Two labrid species did extend their known range during the ENSO: Stethojulis bandanensis settled onto the tip of Baja California and to the Galápagos Islands, while Thalassoma virens recruited heavily to …

Preparing For Bioinformatics Litigation: How Will The Courts Confront The Next Generation Of Biotechnology Patents?, Scott D. Locke, David A. Kalow

Buffalo Intellectual Property Law Journal

No abstract provided.

Establishing A Direct Role For The Bartonella Bacilliformis Invasion-Associated Locus B (Ialb) Protein In Human Erythrocyte Parasitism, Sherry A. Coleman, Michael F. Minnick

Biological Sciences Faculty Publications

The invasion-associated locus A and B genes (ialAB) of Bartonella bacilliformis were previously shown to confer an erythrocyte-invasive phenotype upon Escherichia coli, indirectly implicating their role in virulence. We report the first direct demonstration of a role for ialB as a virulence factor in B, bacilliformis. The presence of a secretory signal sequence and amino acid sequence similarity to two known outer membrane proteins involved in virulence suggested that IalB was an outer membrane protein, To develop an antiserum for protein localization, the ialB gene was cloned in frame into an expression vector with a six-histidine tag and under control …

Intrasteric Inhibition Of Atp Binding Is Not Required To Prevent Unregulated Autophosphorylation Or Signaling By The Insulin Receptor, Mark Frankel, Ararat J. Ablooglu, Joseph W. Leone, Elena Rusinova, J. B. A. Ross, Robert L. Heinrikson, Ronald A. Kohanski

Chemistry and Biochemistry Faculty Publications

Receptor tyrosine kinases may use intrasteric inhibition to suppress autophosphorylation prior to growth factor stimulation. To test this hypothesis we made an Asp1161Ala mutant in the activation loop that relieved intrasteric inhibition of the unphosphorylated insulin receptor (IR) and its recombinant cytoplasmic kinase domain (IRKD) without affecting the activated state. Solution studies with the unphosphorylated mutant IRKD demonstrated conformational changes and greater catalytic efficiency from a 10-fold increase in kcat and a 15-fold-lower K_{m ATP} although K_{m peptide} was unchanged. Kinetic parameters of the autophosphorylated mutant and wild-type kinase domains were virtually identical. The Asp1161Ala mutation increased the …

The Wasp-Like Protein Scar Regulates Macropinocytosis, Phagocytosis And Endosomal Membrane Flow In Dictyostelium, David J. Seastone, Ed Harris, Lesly A. Temesvari, James E. Bear, Charles L. Saxe, James Cardelli

Publications

Scar, a member of the WASp protein family, was discovered in Dictyostelium discoideum during a genetic screen for second-site mutations that suppressed a developmental defect. Disruption of the scar gene reduced the levels of cellular F-actin by 50%. To investigate the role of Scar in endocytosis, phagocytosis and endocytic membrane trafficking, processes that depend on actin polymerization, we have analyzed a Dictyostelium cell line that is genetically null for Scar. Rates of fluid phase macropinocytosis and phagocytosis are significantly reduced in the scar- cell-line. In addition, exocytosis of fluid phase is delayed in these cells and movement of fluid phase …

Leaf Litter Decomposition And Nutrient Dynamics In Four Southern Forested Floodplain Communities, William Conner, Terrell T. Baker Iii, B Graeme Lockaby, Calvin Meier, John A. Stanturf, Marianne K. Burke

Publications

Decomposition of site-specific litter mixtures was monitored for 100 wk in four Roodplaht communities: (i) a mixed oak community along the Cache River in central Arkansas, (ii) s sweetgum (Liquidambar styracijlua L.)-cherrybark oak (Quercus falcata var. pagodaefolia ELI.) community along Iatt Creek in central Louisiana, (iii) a sweetgum-swamp tupelo [Nyssa sylvatica var. biflora (Walt.) Sarg.] community, and (iv) a laurel oak (Quercus laurifolia Michx.) commnnity
along the Coosawhatchie River in southeastern South Carolina. Soil temperature, hydroperiod, and litter quality (C:N, C:P, N:P, fignin: N) were used to interpret differences in the rates of mass loss and …

Santa Clara Magazine, Volume 43 Number 1, Summer 2001, Santa Clara University

Santa Clara Magazine

2 - 150TH ANNIVERSARY MEMORIES In honor of SCU's sesquicentennial year, alumni reflect on their Bronco experiences.

4 - "SHEN FU" LEARNED THE GRACE OF ANGER By Tennant Wright, S.J. A friend shares his memories of Philip Oliger, S.J., who taught him that "passion is the sign that we are alive."

14 - WINGING IT By Adam Breen. Professor Bill Stover is a volunteer pilot for The Flying Doctors, a humanitarian group that brings free basic health and dental care to underprivileged communities in Mexico.

18 - SAVING GRACE By Elizabeth Kelly Gillogly '93. Santa Clara University's 150 years come …

Fish & Wildlife News: July/August/September 2001

Fish and Wildlife News

Contents:
Bush’s Intention to Nominate Service Director 2
Klamath Basin Controversy In-Depth 3
Wyoming Hatchery Helps Great Lakes Fish 5
IAFWA is Key FWS Partner 8
Special Section: Partners Program 9
Partners Can Profit, Too 17
Rebirth of a Prairie 22
Buttermilk Falls Better 27
Check Your Ego at the Door 32
Tribal Lands Key Component in Partners 36
Restoring Habitat Link by Link 39
Fish and Wildlife...In Brief 47

Mononuclear Phagocyte Differentiation, Activation, And Viral Infection Regulate Matrix Metalloproteinase Expression: Implications For Human Immunodeficiency Virus Type 1-Associated Dementia, Anuja Ghorpade, Raisa Persidskaia, Radhika Suryadevara, Myhanh Che, Xiao Juan Liu, Yuri Persidsky, Howard Gendelman

Nebraska Center for Virology: Faculty Publications

The pathogenesis of human immunodeficiency virus type 1 (HIV-1)-associated dementia (HAD) is mediated mainly by mononuclear phagocyte (MP) secretory products and their interactions with neural cells. Viral infection and MP immune activation may affect leukocyte entry into the brain. One factor that influences central nervous system (CNS) monocyte migration is matrix metalloproteinases (MMPs). In the CNS, MMPs are synthesized by resident glial cells and affect the integrity of the neuropil extracellular matrix (ECM). To ascertain how MMPs influence HAD pathogenesis, we studied their secretion following MP differentiation, viral infection, and cellular activation. HIV-1-infected and/or immune-activated monocyte-derived macrophages (MDM) and human …

Semantic Operators And Fixed-Point Theory In Logic Programming, Anthony K. Seda, Pascal Hitzler

Computer Science and Engineering Faculty Publications

We consider rather general operators mapping valuations to (sets of) valuations in the context of the semantics of logic programming languages. This notion generalizes several of the standard operators encountered in this subject and is inspired by earlier work of M.C. Fitting. The fixed points of such operators play a fundamental role in logic programming semantics by providing standard models of logic programs and also in determining the computability properties of these standard models. We discuss some of our recent work employing topological ideas, in conjunction with order theory, to establish methods by which one can find the fixed points …

Responses Of Three Coral Communities To The 1997–98 El Niño–Southern Oscillation: Galápagos Islands, Ecuador, Joshua S. Feingold

Marine & Environmental Sciences Faculty Articles

One deep (13–15 m depth) and two shallow water (1.5 and 7 m) coral communities in the Galápagos Islands, Ecuador were monitored for tissue response (bleaching, paling, morbidity) and secondary responses during and after elevated temperature stress associated with the 1997–98 El Niño–Southern Oscillation (ENSO) event. Between March and May 1998, the fungiid coral Diaseris distorta paled and bleached (up to 88.0% of all individuals bleached) at 13–15 m depth. The small branching colonial coral, Psammocora stellata, paled (79.2% of all colonies) with very little bleaching (11.1%), also at 13–15 m depth. However, by May 1998 colonies of this …

Paterson's Curse Management Handbook, Amelia Mclarty, Errol Kruger, Peter Stubbs, John Peirce, Chris Hawkins, Paul Wilson, Simon Merewether

Bulletins 4000 -

Paterson’s curse (Echium plantagineum) is one of the most damaging weeds to the Australian meat and wool industries. It infests an estimated 33 million hectares in southern Australia, at an annual cost to the sheep industry of $250 million in lost pasture productivity, control costs and wool contamination. In WA, it is found on about 5000 agricultural properties infesting some 500,000 ha. It is an extremely invasive weed, that reduces pasture productivity and stock carrying capacity by competing with and excluding more beneficial pasture species. The weed is also toxic to stock. It is important to implement control measures on …

Variation In Response To Artificial Selection For Light Sensitivity In Guppies (Poecilia Reticulate), John A. Endler, Alexandra Basolo, Stan Glowacki, Julianne Zerr

School of Biological Sciences: Faculty Publications

We performed artificial selection on the visual system in guppies (Poecilia reticulate), using the optomotor reaction threshold as the selection criterion. Two lines were selected for increased sensitivity to blue light, two were selected for increased sensitivity to red light, and two were unselected controls. There was significant response to selection in all four selected lines and significant heritability for sensitivity. An examination of the spectral sensitivity function showed that the form of the response differed between the red and blue lines and among the red lines. Such divergence is likely because there are many different mechanisms allowing …

Unexpected Post-Translational Modifications And Novel Sequence-Structure Relationships Revealed By The Crystal Structure Of Chlamydomonas Reinhardtii Rubisco, T. C. Taylor, A. Backlund, R. J. Spreitzer, I. Andersson

Department of Biochemistry: Faculty Publications

The crystal structure of Rubisco from Chlamydomonas reinhardtii has been solved to 1.4 Å resolution. In addition to clear electron density for the carbamate on lys-201, the active site magnesium ion and the inhibitor 2-CABP, there was unexpected but unambiguous electron density for further specific post-translational modification. The N-terminus of the mature small subunit is methylated. The large subunit contains two methylcysteine residues (256 & 369) and two hydroxyproline residues (104 & 151). The small subunit from Chlamydomonas shows a structure more similar to that of the higher green plants than that from other algae of known structure. An extensive …

Can Negligible Levels Of Rubisco Activase, Be The Reason For Decreased Rubisco Activity Levels In Guard Cells?, S. Madhavan, P. Echtenkamp

Department of Biochemistry: Faculty Publications

Rubisco in guard cell chloroplasts has been a subject of controversy for decades. Several studies have unequivocally confirmed not only the presence of Rubisco in guard cells but also found it to be catalytically active. Based on a cell basis, the amount of Rubisco in guard cells is suggested to be in the range of 0.6 to 1.4 % whereas its activity is reported to be in the range of 0.35 to 0.5%, of a mesophyll cell. This low activity may be due a) to a low Rubisco content, and/or, b) to either the absence or an inactive functional activation …

Forage News [2001-07], Department Of Plant And Soil Sciences, University Of Kentucky

Forage News

• Robinson Station Celebrates 75^TH Anniversary
• Economic Benefits of Stockpiled Fescue on Two Northeast Arkansas Farms
• Performance of Cattle on “HIMAG” Tall Fescue Infected with Novel Endophytes
• Determination of Pregnancy Outcome of Mares Grazed on a Toxic-Free Endophyte-Infected Tall Fescue (MaxQ)
• Cutting Height to Maximize Yield and Quality
• Sampling Medium Rectangular Bales: How Many Cores are Enough?
• Upcoming Events

Hexapod Herald - Vol. 13, No. 2, July 2001

Hexapod Herald and Other Entomology Department Newsletters

Welcome

Congratulations

Personnel update

Condolences

Grants

Graduate student news

Publications

Travel

From the office

Entomology fall faculty meetings dates

Calendar of events

Evaluation Of Residual Chlorothalonil Levels On Processing Tomato Foliage Using The Tom-Cast Spray Program, Jane M. Patterson, Sue E. Nokes, Mark A. Bennett, Richard E. Riedel

Biosystems and Agricultural Engineering Faculty Publications

Field tomatoes were sprayed with chlorothalonil on a fixed–interval spray program and a TOM–CAST spray program with disease severity value threshold of 18. Foliage samples from upper and lower canopy layers were collected prior to spray re–applications. Chlorothalonil residue data were compared to the chlorothalonil efficacy threshold (1.2 μg/cm²). Using a seven–day interval program, eight of the nine and seven of the nine spray intervals had chlorothalonil residues above the critical level for the upper and lower canopy layers, respectively. Using the TOM–CAST program, four of the five spray intervals had chlorothalonil residues above the critical level for …

Influence Of Inoculum Size On Phytase Production And Growth In Solid-State Fermentation By Aspergillus Niger, Chundakkadu Krishna, Sue E. Nokes

Biosystems and Agricultural Engineering Faculty Publications

Solid–state fermentation is experiencing renewed interest for industrial enzyme production. Previous studies on the effects of fungal inoculum size on product yield have focused on spore inoculum. However, some organisms require vegetative inocula. This study investigated the effects of initial inoculum colony age, vegetative inoculum size, and duration of fermentation on the production of fungal biomass and phytase in solid–state fermentation using Aspergillus niger grown on wheat bran and soy meal. Initial inocula from 7– and 14–day–old potato dextrose agar (PDA) plates were used to study the effect of inoculum colony age in liquid culture and its further influence on …

Reversible Phosphorylation Of Photosynthetic Pep Carboxylase: Studies On C4-Leaf Pp2a And Recombinant Pepc-Kinase From Cam-Induced Mesembryanthemum Crystallinum, L. Dong, N. V. Ermolova, M. A. Cushman, T. Taybi, J. C. Cushman, Raymond Chollet

Department of Biochemistry: Faculty Publications

The activity and allosteric properties of plant PEPC are controlled posttranslationally by specific reversible phosphorylation of a strictly conserved Ser residue near the N-terminus. This up/down-modulation is catalyzed by a transcriptionally regulated, seemingly dedicated Ser/Thr kinase (PpcK) and an opposing Ser/Thr phosphatase (PP2A). We have now partially purified and characterized the native form of this largely “neglected” PP2A from maize leaves using various chromatographic and affinity matrices, and C₄ [³²P]PEPC as substrate (Dong et al., 2001, Planta [in press]). The results indicate that the C₄-leaf holoenzyme is analogous to yeast and mammalian PP2As in regards …

A Cytochrome-B Perspective On Passerina Bunting Relationships, John Klicka, Adam J. Fry, Robert M. Zink, Christopher W. Thompson

Ornithology Program (HRC)

We sequenced the complete mitochondrial cytochrome-b gene (1,143 nucleotides) for representatives of each species in the cardinalid genera Passerina (6 species), Guiraca (1 species), and Cyanocompsa (3 species), and used a variety of phylogenetic methods to address relationships within and among genera. We determined that Passerina, as presently recognized, is paraphyletic. Lazuli Bunting (P. amoena) is sister to the much larger Blue Grosbeak (Guiraca caerulea). Indigo Bunting (P. cyanea) and Lazuli Bunting are not sister taxa as generally thought. In all weighted parsimony trees and for the gamma-corrected HKY tree, Indigo Bunting is …

Preparations For Transformation Of Drosophila Melanogaster With Green Fluorescent Protein-Tagged Dmnopp140 And Dmnopp140-Rgg By P-Element Transformation, Jennifer Mccain

Honors Capstones

No abstract provided.

Sedges: Cyperus To Scleria, Robert H. Mohlenbrock

Illustrated Flora of Illinois

This second edition of Sedges: Cyperus to Scleria brings up to date the identification of species of sedges in Illinois (except Carex) since publication of the first edition in 1976.

During the intervening years, several additions to the sedge flora of Illinois have been made, and many new distributional records have been added. Also, a large number of nomenclatural changes have taken place, resulting in several alterations of scientific names. New illustrations have been provided for all of the additions.

In his introductory material, Robert H. Mohlenbrock discusses the morphology of sedges and the habitats where they can be …

Grasses: Panicum To Danthonia, Robert H. Mohlenbrock

Illustrated Flora of Illinois

Since the publication of the first edition of Grasses: Panicum to Danthonia in 1973, twenty additional taxa of grasses have been discovered in Illinois that are properly placed in this volume. In addition, numerous nomenclatural changes have occurred for plants already known from the state, and many distributional records have been added. This second edition updates the status of grasses in Illinois. Paul W. Nelson has provided illustrations for all of the additions.

Because the nature of grass structures is generally so different from that of other flowering plants, a special terminology is applied to them. In his introduction, Robert …

Louisiana Agriculture Summer, 2001, Lsu Agcenter

Louisiana Agriculture

No abstract provided.

Longitudinal Succession Of Fishes In The Dan River In Virginia And North Carolina (Blue Ridge/Piedmont Provinces), Fred C. Rohde, Rudolf G. Arndt, Scott M. Smith

Southeastern Fishes Council Proceedings

No abstract provided.

Front Matter, Southeastern Fishes Council

Southeastern Fishes Council Proceedings

No abstract provided.

News And Notes, Southeastern Fishes Council

Southeastern Fishes Council Proceedings

No abstract provided.

Number 42 (July 2001), Southern Fishes Council

Southeastern Fishes Council Proceedings

(July 2001) - Longitudinal succession of fishes in the Dan River in Virginia and North Carolina (Blue Ridge/Piedmont Provinces). By Fred C. Rohde, Rudolf G. Arndt and Scott M. Smith

Minutes, Business Meeting, 26th Annual Meeting, Southeastern Fishes Council Regional Southeastern Fishes Council Reports

Minutes, Business Meeting, Southeastern Fishes Council

Southeastern Fishes Council Proceedings

No abstract provided.