Life Sciences Commons^™

Conservation And Management Of Greater Sage-Grouse In Strawberry Valley: Quantifying Influences On A Traditional Capture Method And Long-Term Trends In Clutch Size, Janae Radke

Theses and Dissertations

The greater sage-grouse (Centrocercus urophasianus) is a species of conservation concern that has undergone serious declines in the last century. The Strawberry Valley sage grouse population in Utah underwent such a decline from an estimated 3,500 sage grouse in the 1930s to 150 sage grouse in the early 2000s. This decline initiated a long-term conservation and monitoring project in Strawberry Valley with the goal of preserving the sage grouse population. As part of this ongoing conservation project, we investigated factors that impact the success of capturing sage grouse using the night-lighting method (Chapter 1). We found that capture success is …

Sagefire: An Agent-Based Model Of Heat Dynamics In Sagebrush Steppe Ecosystems During A Fire Event, Samuel Joseph Knuth

Theses and Dissertations

Context: The Great Basin in the western US features arid to semi-arid climates and sagebrush steppe ecosystems. Increased fire frequency can negatively impact these ecosystems by promoting invasive species. Agent-based modeling is a valuable tool to study fire dynamics in sagebrush steppe ecosystems, offering insights in management strategies and ecosystem resilience. Objectives: We developed SageFire, an agent-based model, to simulate heat dynamics influenced by shrub cover during fires in the Great Basin. Our objectives were to accurately classify ground cover types, incorporate classified imagery into a simulation model, and accurately visualize fire intensity based on the spatial arrangement of the …

Spatial Distribution Of Soil Nutrients And Properties As A Function Of Vegetation Distribution, Fire, And Rodent Activity, Nathan O. Jones

Theses and Dissertations

Fires are becoming larger and more frequent in the deserts of North America, driven largely by the expansion of invasive annual grasses. Rodent consumers can curb invasive grass expansion through plant herbivory, but the top-down effects of this pressure on soil resources are understudied. In shrub dominated deserts, islands of fertility under shrub canopies are surrounded by nutrient poor interspace soils that dictate patterns of vegetative growth. Little is known of how top-down controls from rodents and fire may interact with fertile island topography. These studies explore the effects of fire, rodent activity, and fertile island topography on plant available …

E Afua Mai Mauga Manuia O Nu'u: Conservation From Mountains To Reefs In Tropical Pacific Islands, Tavailau T. Segi

Theses and Dissertations

Soil erosion is the main exacerbating threat to climate change impacts in tropical Pacific islands, particularly to steep and mountainous volcanic islands. The morphological features (steep and mountainous), short distance from ridge to reef, frequent storm events, extended raining season, and accelerating developments from growing populations pose serious threats to terrestrial and marine resources. Perhaps the most threatening part is the high dependency of their human populations on the land and ocean for food supplies, supporting national economies, and sustaining culture and human well-being. Locals, governments, and non-governmental organization projects are underway to improve protection and management of natural resources …

The Role Of Caloric Intake On Achilles Tendon Health In Pre-Professional Ballet Dancers, Annie G. Smedley

Theses and Dissertations

Background: Achilles tendinopathy is a common and debilitating condition among female ballet dancers due to the large repetitive loading forces placed on their Achilles tendons during rehearsals and performances. Tendon health problems in females are exacerbated by a lack of understanding about how energy availability influences tendons. Ballet dancers, as aesthetic athletes, are vulnerable to low energy availability and can enter a spectrum disorder, relative energy deficiency in sport, that consists of low energy availability (with or without disordered eating), menstrual cycle dysfunction, and low bone mineral density (BMD). Aims: 1) To investigate the relationship between insufficient caloric intake and …

Spatiotemporal Variation In Regeneration And Herbivory In Stable And Seral Aspen Stands, Sterling Burgess Kerr

Theses and Dissertations

Aspen forests are strongly influenced by disturbances like fire and ungulate herbivory, which can impact plant community composition and succession. Human activities alter these disturbances, affecting their timing, extent, and severity. Chapter 1 explores the effects of large-scale prescribed fire and mechanical thinning treatments on aspen regeneration and vulnerability to ungulate herbivory. Results show that while aspen regeneration was hindered by chronic ungulate herbivory in untreated areas, mechanical thinning and prescribed fire stimulated aspen regeneration. However, mechanically thinned plots were vulnerable to ungulate herbivory, with only prescribed fire having reduced browsing. Chapter 2 investigates herbivory patterns and recruitment across stable …

Association Between Handgrip Strength And Muscle Mass In Children 6 To 10 Years Old, Samantha Velázquez Villalobos

Theses and Dissertations

Measuring body composition in children is important due to the rise of childhood obesity and changes that occur during pre-pubertal years. Sarcopenia, defined as a muscle mass loss and function, is increasingly recognized in pediatric populations, particularly in childhood obesity. Therefore, it is necessary to have measurements which not only provide an overall picture of body composition, but that can distinguish between muscle and fat mass. Methods of body composition such as Dual Energy X-ray Absorptiometry (DEXA) provide accurate assessments of body composition, but they are resource-intensive and impractical for routine monitoring in clinical or community settings. To address this, …

Exploring Mesolimbic Circuitry Modulation By Opiates, Interleukin-10, And Psychostimulants, Joakim W. Ronström

Theses and Dissertations

The mesolimbic dopamine (DA) system originates in the ventral tegmental area (VTA) and projects to the nucleus accumbens (NAc) and other areas including the basolateral amygdala (BLA), prefrontal cortex, and the hippocampus. Drug use induces reward and leads to dysregulation in these brain areas and eventually to substance use disorders (SUDs). Chapter 1 introduces the mesolimbic DA system and its relationship to drug use and their relevance to each chapter. Chapter 2 explores opioid effects on BLA circuitry which is known to play a role in the emotional response including anxiety and stress in SUDs. We showed that morphine induced …

Characterization Of Cellular Metabolism Regulation By The Transcription Factor Centromere Binding Factor 1 (Cbf1), Spencer Ellsworth

Theses and Dissertations

Centromere binding factor 1 (Cbf1) is a transcription factor that controls the transcription of many genes involved in cellular respiration and lipid biogenesis and, as such, has been associated with hypolipidemia in humans. It is a known substrate for PAS kinase, which phosphorylates Cbf1 and alters its activity. Our hypothesis is that this phosphorylation affects the genes it regulates and the DNA motifs it binds to, perhaps due to different transcription complexes being formed. In this study, we conduct a chromatin immunoprecipitation in Saccharomyces cerevisiae to determine what genes and DNA motifs Cbf1 binds to in its wild type versus …

Investigating The Antibacterial Properties Of Nanostructured Aluminum Surface, Quinshell Smith

Theses and Dissertations

Bacterial infections are a major public health concern. Bacterial infection can occur in any part of the body and can also cause the body to respond to its presence. Bacteria can be transferred to humans through water, food, air, and living vectors. The modes of transmission for bacterial infections are vectors, airborne, physical contact, and droplets. Current preventative measures have been put in place to combat this issue. These preventative measures include immunization of both animals and humans, personal hygiene measures, biocidal agents, and essential oils. Bacterial resistance has occurred due to these preventative measures being misused and overused. Bacteria …

Hormetic Modulation Of On Mtor Mitochondria Cross Talk For Mitigation Of Cellular Aging, Mahalakshmi R

Theses and Dissertations

Cellular aging is a gradual process involving structural and functional deterioration of cells. Mitochondria, the biological clock in cells, are known to play a crucial role in the progression of cell aging. According to the mitochondrial free radical theory of aging, oxidative phosphorylation in the mitochondria produces free radicals, such as, reactive oxygen species (ROS), which lead to oxidative stress in cells. This, in turn, results in mitochondrial dysregulation, and eventually causes degeneration of cellular components, thereby propagating cell aging. However, it is to be underscored that aging, at its core, is a multifaceted phenomenon that involves a number of …

Evaluating The Effectiveness Of Dormant Season Grazing To Reduce Cheatgrass And Its Effect On Biodiversity, Curtis L. Drake

Theses and Dissertations

Invasion of cheatgrass (Bromus tectorum L.) into sagebrush steppe communities threatens the survival of these at-risk ecosystems. One tool available to combat cheatgrass invasion is dormant season grazing. This study investigates the effectiveness of dormant season cattle grazing to reduce cheatgrass abundance in two high-elevation sagebrush steppe communities in southeastern Idaho, as well as the impact of dormant season grazing on plant species biodiversity. Our experiment utilized a randomized complete block design with four grazing treatments – ungrazed, fall-grazed, spring-grazed, and a combination of spring- and fall-grazed. We used an ANOVA standard least squares procedure to determine differences in biodiversity …

Time Spent Jogging/Running And Biological Aging In 4,458 U.S. Adults: An Nhanes Investigation, Christina Michelle Blackmon

Theses and Dissertations

Telomere length is a good index of cellular aging. Longer telomeres are predictive of longer life, and healthy lifestyles are associated with longer telomeres. This study explored the relationship between time spent jogging or running each week and leukocyte telomere length (LTL) in 4,458 randomly selected U.S. adults. The association was studied using data collected by the National Health and Nutrition Examination Survey (NHANES), and a cross-sectional design. Total weekly jog/run time was calculated from survey responses. From the minute totals, three categories were formed: <10 minutes/week, 10-74 minutes/week, and ≥75 minutes/week. Adults in the third category met the U.S. guidelines. Data were analyzed using one-way ANOVA. Partial correlation was used to adjust for differences in potential mediating factors, including demographic and lifestyle/medical factors. In the total sample, after adjusting for all the potential covariates, mean LTL significantly differed across the 3 jog/run categories (F=4.1, P=0.0272). Specifically, adults who met the guidelines via jogging and/or running had significantly longer telomeres than adults who performed no jogging/running. Adults in the middle category did not differ from the other two categories. A minimum of 75 minutes of jogging/running weekly is predictive of longer telomeres when compared to adults who do not jog or run regularly.

Drug Modification Of Synaptic Plasticity At The Inhibitory Synapses Involving Gaba Neurons In The Ventral Tegmental Area, Jie Wu

Theses and Dissertations

The neurobiological underpinnings of substance use disorders (SUDs) involve complex alterations in synaptic plasticity within the mesolimbic dopamine system, particularly within the ventral tegmental area (VTA). While dopamine neurons in the VTA are extensively studied in addiction research, less attention has been given to the plasticity exhibited by VTA GABAergic neurons, despite their established regulatory role in modulating dopamine cell activity. Building upon the ground-breaking work of Bocklisch et al. (2013), we investigated the plasticity at the GABAergic to VTA GABA neuron (VTA GABA-to-GABA) synapse utilizing whole-cell electrophysiology in GAD67 GFP knock-in mice. Our findings revealed an exceptionally rare duo-plasticity …

Identification Of A Novel Target For Declustering Supernumerary Centrosomes In Triple Negative Breast Cancer, Priyanga J

Theses and Dissertations

Triple-negative breast cancer (TNBC) confers considerable interventional challenge owing to its massive heterogeneity, aggression and metastatic prowess. These facets are attributed to chromosomal instability (CIN), a feature consequent to TNBC cell’s ability to harbor more than two centrosomes (supernumerary centrosomes; SNCs).

In principle, if a normal cell possesses SNCs, uneven pull forces are generated consequent to multipolar spindle, which activates cellular surveillance. This ensures error-free mitosis by either repairing the error or, in an irreparable condition, driving cells to death. This averts the possibility of aneuploidy (fundamental to tumorigenesis).

Unfortunately, TNBC cells, despite harboring SNCs, have devised a survival strategy …

Preventing Orthopedic Implant Associated Biofilm Infections Using Transition Metal Complex Laminated Bioactive Implants, Sowndarya J

Theses and Dissertations

Orthopedic implants are medical devices employed to repair the damaged structure and function of an injured musculoskeletal system. It helps millions of people suffering from bone fractures and arthroplasty. The increased use of orthopedic implants has given rise to implant-associated biofilm infections. Biofilm-mediated Implant-associated osteomyelitis (IAO) is a major concern in the medical field, wherein the treatment involves debridement, administration of antibiotics and removal of implants leading to increased cost of treatment.

The keystone bacterial pathogens involved in orthopedic implant-associated infections are Staphylococcus aureus and Acinetobacter baumannii which are members of the ESKAPE pathogens. A. baumannii has gained resistance against …

The Effects Of Diesel Exhaust Particle Exposure On Adipos Mitochondrial Bioenergetics And Inflammation, Cali Elizabeth Warren

Theses and Dissertations

Fine particulate matter (PM2.5) constitutes a significant component of ambient air pollution that has been implicated in the pathogenesis of metabolic disorders, including insulin resistance and type 2 diabetes. Among PM2.5 constituents, diesel exhaust particles (DEP) are prevalent particulates that infiltrate the bloodstream to drive systemic pathologies. The purpose of this study was to characterize the metabolic response of adipose tissue to DEP. We aimed to provide a comprehensive understanding by exploring mitochondrial bioenergetics, characterizing the inflammatory marker profile, including adipokines, and conducting a detailed histological analysis of adipocytes to provide valuable insights to the evolving understanding of the intricate …

Applicability Of Using Bio-Receptive Concrete For Building Facades In Egypt, Gina Roupheil

Theses and Dissertations

The significant increase in carbon dioxide emissions caused by the construction industry is detrimental to our planet. This is rapidly increasing with the urbanization of cities that is gradually taking its toll on the available green spaces, which help in balancing such emissions. Recently, researchers have been trying to make use of bio-receptivity to create biomaterial systems that could be spread on building envelopes and support the growth of small plant species and microorganisms to establish on. Out of those materials, comes the concrete as a promising material for bio-colonization.

Within this context, this study aims at investigating the applicability …

Integrative Genomic Insights Into Coral Resilience: Adaptive And Acclimatory Responses To Seasonal Environmental Shifts, Tasnim Ghanim

Theses and Dissertations

Coral reefs, critical to marine biodiversity and coastal protection, face escalating threats from climate change-related phenomena such as ocean warming. This warming is leading to widespread thermal stress that contributes to coral bleaching and infectious disease in corals, leading to the disruption of marine ecosystems and the economies that depend on them. Focusing on the brain coral Platygyra daedalea, known for its thermal resilience in the Persian Arabian Gulf—a region that exemplifies the extreme stressors of climate change—our study aims to dissect the genetic, transcriptomic, and microbiological underpinnings of coral survival in high-temperature environments predicted for the end of …

Impairment Of The Glial Phagolysosomal System Drives Prion-Like Propagation Of Huntington’S Disease, Graham Davis

Theses and Dissertations

The ability of glia to tightly regulate neuronal health and homeostasis in the CNS is conserved across species. Yet, despite the ability to degrade protein aggregates, glia are vulnerable to the accumulation of neurotoxic amyloid aggregates during neurodegenerative disease progress, and even exacerbate their spread. A developing narrative highlights glia as a double-edged sword in neurodegenerative diseases: initially capable of dynamically responding to amyloid aggregate-ladened dying neurons but also capable of inducing chronic inflammation and creating seeding-competent amyloid oligomers. Thus, uncovering the mechanisms that allow glia to control aggregate deposition while preventing the neurotoxic effects and seed generation is vital …

Stacking And Intersecting Nutrient 4rs On Potato, Samuel Hamilton Stapley

Theses and Dissertations

The 4Rs of nutrient management is a global agronomic initiative with an aim to improve the sustainability of major cropping systems and the environment. The objective for this project is to evaluate individual and stacked 4R management practices and how they intersect. A field trial near Grace, Idaho was conducted on potato (Solanum tuberosum L.) in 2020 and 2023. Nitrogen (N) fertilizer treatments included all combinations of two sources [urea or polymer coated urea (PCU)], two rates (82 or 100% of the recommended rate), and/or two timing/placements (all applied at emergence or 84% at emergence + 16% fertigation simulation) compared …

Exploring A Gene Panel For Parkinson’S Disease In An Egyptian Cohort, Asmaa Saeed Gabr

Theses and Dissertations

Parkinson’s disease is a highly heterogeneous disorder characterized by diverse neuropathological features, clinical presentations and progression patterns. In Egypt, Parkinson’s disease incidence rates lie outside the range reported elsewhere. The genetic background to the pathogenesis of Parkinson's disease has been postulated for a long time. However, Parkinson’s disease has never been systematically investigated in Egypt. This study aimed to explore genetic variants and interactions that are associated with the familial and sporadic forms of Parkinson's disease in an Egyptian cohort. This includes examining variants in PD-related genes, exploring the role of specific genes like MAPT and adjacent genomic regions, and …

The Relationship Between Cognitive Impairment In Psychiatric Patients And Readmission Rate To An Inpatient Facility, Cherilyn Isis Schuff

Theses and Dissertations

The primary intention of this study was to further understand the impact of assessing cognitive impairment in psychiatric patients, as a mediating factor on readmission rates. Mild cognitive dysfunction impacts a patient’s functional outcomes (Bowie & Harvey, 2006; Davis et al., 2012; Marcantonio, et al., 2001). Little information exists to guide best practices in the treatment of adults with cognitive impairment who are hospitalized for acute conditions (Davis et al., 2012). A cognitive impairment may impact patient prognosis and ability to function outside of a setting focused on stabilization. Neuropsychological testing is a valuable tool in predicting a patient’s cognitive …

Analyzing The Effects Of Data Variability & Volume On Predicting Particulate Matter (Pm2.5): Insights From A Machine Learning Approach, Jada A. Macharie

Theses and Dissertations

Accurately predicting PM_2.5 concentrations are imperative to the future of public health and environmental policies. Machine learning models incorporating spatial and temporal datasets to predict PM_2.5 are often limited by data availability constraints and poor resolution satellite imagery.

Antibacterial And Anticancer Activities Of A Fosmid Clone From Atlantis Ii Red Sea Brine Pool., Marina Nabil

Theses and Dissertations

Antimicrobial resistance (AMR) and cancer are among the top global human health issues requiring urgent control practices. AMR caused 5 million death cases around the world in 2019. This number is expected to reach 10 million deaths by 2050. Cancer deaths reached 10 million in 2020. Additionally, anticancer drug resistance is a common cause of death among cancer patients. Screening for novel compounds is one of the strategies recommended by the World Health Organization (WHO) to control drug resistance in microbial and cancer cells. Marine natural products (MNPs) are characterized by chemically diverse structures with various bioactivities, especially in extreme …

Phosphomolybdic Acid-Doped Zeolitic Imidazolate Framework-8 Hybrid: Nanostructured Material With Synergistic Antibacterial Effect, Mariam Mohammad Abdelkhalek

Theses and Dissertations

Bacterial infections represent a major global health concern, causing millions of deaths and significant economic burdens. The development of nanostructured surfaces with antibacterial activity can revolutionize infection control practices. In this study, a hybrid material of Zeolitic imidazolate framework-8 (ZIF-8) doped with phosphomolybdic acid (PMA) was synthesized and characterized by FESEM, EDS, XRD, FTIR, and N2 sorption isotherm. The antibacterial activity against Escherichia coli as a model organism was tested by colony forming unit (CFU) reduction assay, minimum inhibitory concentration (MIC), and time-kill curve. PMA@ZIF-8 performance as an antibacterial agent was superior to its individual constituents, suggesting synergistic effect of …

The Role Of The Cdk8 Kinase Module In Maintaining Proteostasis, Stephen Willis

Theses and Dissertations

The underlying etiology of numerous disease states results from perturbations in the maintenance of cellular proteostasis. Carcinogenesis relies on these perturbations to foster uncontrolled cell growth and eventual metastases, while neurodegenerative diseases are a consequence of such perturbations. Control of these processes occurs at numerous molecular levels, commonly starting with transcription. A key transcriptional complex that is involved is the CDK8 Kinase Module (CKM). The CKM is conserved from yeast to man, forming a tetrameric complex consisting of MED12, MED13, CDK8, and CCNC. The CKM has not only been implicated in a variety of cancers but also in a spectrum …

Elastin-Like Polypeptide As A Model To Study Intrinsically Disordered Proteins, Sadegh Majdi

Theses and Dissertations

The elastin-like polypeptide (ELP) is a well-studied structural protein that is easily amenable to amino acid (AA) sequence modifications and has the potential to yield a wide variety of uses in bioengineering and biomedical applications. One unique property of ELP is the inclusion of intrinsically disordered domains (IDP) within the structure that allow for its diversity of physical properties. While it is generally understood that amino acid sequence dictates protein folding arrangements, the contributions of specific amino acid sequences to the intrinsic disorder of ELP has yet to be fully resolved. Therefore, identifying the contributions of specific amino acid sequences …

Unveiling The Unique Ras Isoform And Domain Specific Regulation Of Braf Kinase, Tarah Trebino

Theses and Dissertations

BRAF kinase is a key member of the MAPK pathway, important for cell growth and division. Upstream signals promote BRAF activation by interaction with the membrane bound GTPase, RAS, which leads to relief of autoinhibition and dimerization. The N-terminal regulatory domains of BRAF, including the BRAF specific region (BSR), the RAS binding domain (RBD), and the cysteine rich domain (CRD), govern the conformational state of the cytosolic, autoinhibited monomer and drive the RAS-RAF interaction. Active BRAF phosphorylates and activates its substrate MEK, which in turn phosphorylates and activates ERK. Mutations in RAS and BRAF are the cause of many cancers …

Through Their Eyes: Illuminating The Nature Of Animal Use In Conservation Research Through An Analysis Of Peer-Reviewed Literature In The Journal Conservation Biology, Sarah Hollmann

Theses and Dissertations

Non-human animals habitually have been treated as a resource in the service of humans and human-driven values. The field of conservation is not immune to this fact. But, because conservation is seemingly dedicated to the saving and protection of species and nature, until recently the field historically has been given a pass for the use and treatment of animals that are done “in the name of conservation”. This treatment is evident in common conservation practices such as capture, captivity, invasive sampling, aversive treatment, experimental manipulation, and intentional killing. A principal question we are asking is how individual animals are impacted …