Life Sciences Commons^™

Neutrophil-To-Lymphocyte Ratio: A Biomarker To Monitor The Immune Status Of Astronauts, Amber M. Paul, Siddhita D. Mhatre, Egle Cekanaviciute, Ann-Sofie Schreurs, Candice G.T. Tahimic, Ruth K. Globus, Sulekha Anand, Brian E. Crucian, Sharmila Bhattacharya

Publications

A comprehensive understanding of spaceflight factors involved in immune dysfunction and the evaluation of biomarkers to assess in-flight astronaut health are essential goals for NASA. An elevated neutrophil-to-lymphocyte ratio (NLR) is a potential biomarker candidate, as leukocyte differentials are altered during spaceflight. In the reduced gravity environment of space, rodents and astronauts displayed elevated NLR and granulocyte-to-lymphocyte ratios (GLR), respectively. To simulate microgravity using two well-established ground-based models, we cultured human whole blood-leukocytes in high-aspect rotating wall vessels (HARV-RWV) and used hindlimb unloaded (HU) mice. Both HARV-RWV simulation of leukocytes and HU-exposed mice showed elevated NLR profiles comparable to spaceflight …

Stem-Inhabiting Fungal Communities Differ Between Intact And Snapped Trees After Hurricane Maria In A Puerto Rican Tropical Dry Forest, François Maillard, Erin Andrews, Molly Moran, Peter G. Kennedy, Skip Van Bloem, Jonathan S. Schilling

Publications

Hurricanes impact forests by damaging trees and altering multiple ecosystem functions. As such, predicting which individuals are likely to be most affected has crucial economic importance as well as conservation value. Tree stem-inhabiting fungal communities, notably rot-causing agents, have been mentioned as a potential factor of tree predisposition to hurricane damage, but this assumption remains poorly explored. To examine this relationship, we sampled the stem wood of intact and damaged trees shortly after Hurricane Maria in a Puerto Rican dry tropical forest in 2017. We categorized samples depending on two types: trees with intact stems and trees in which stems …

A Statistical Learning Regression Model Utilized To Determine Predictive Factors Of Social Distancing During Covid-19 Pandemic, Timothy A. Smith, Albert J. Boquet, Matthew V. Chin

Publications

In an application of the mathematical theory of statistics, predictive regression modelling can be used to determine if there is a trend to predict the response variable of social distancing in terms of multiple predictor input “predictor” variables. In this study the social distancing is measured as the percentage reduction in average mobility by GPS records, and the mathematical results obtained are interpreted to determine what factors drive that response. This study was done on county level data from the state of Florida during the COVID-19 pandemic, and it is found that the most deterministic predictors are county population density …

Variable Fall Climate Conditions On Carbon Assimilation And Spring Phenology Of Young Peach Trees, Brian T. Lawrence, Juan Carlos Melgar

Publications

Variable fall temperature and moisture conditions may alter leaf senescence of deciduous fruit trees, influencing carbon assimilation before dormancy and phenology the following spring. This study explored gas exchange of young peach trees (Prunus persica (L.) Batsch) when senescence proceeded normally or was delayed during the fall under two soil moisture treatments: Well-irrigated trees or water deficit. Results showed leaf carbon assimilation was similar between the senescence treatments, but whole tree assimilation was estimated to be greater in delayed senescence trees compared to normal senescence trees based on timing of defoliation and total leaf area. The effect of soil moisture …

Development Of A Grass Measurement Optimisation Tool To Efficiently Measure Herbage Mass On Grazed Pastures, D. J. Murphy, B. O'Brien, Michael D. Murphy

Publications

Accurate and efficient estimation of herbage mass is essential for optimising grass utilisation and increasing profit for pasture farming. There is no definitive sampling protocol for grass measurement on Irish pastures. This paper presents the Grass Measurement Optimisation Tool (GMOT), designed to generate measurement protocols that optimise for time and accuracy. The GMOT was designed in the form of a decision support tool that generates interactive paddock maps that guide the farmer on how to optimally measure their pastures in a random stratified manner based on GPS co-ordinates, resulting in accurate non-biased estimations of mean herbage mass. Rising plate meter …

Photovoltaic Systems On Dairy Farms: Financial And Renewable Multi-Objective Optimization (Farmoo) Analysis, Michael Breen, J. Upton, Michael D. Murphy

Publications

No abstract provided.

Validation Of An Automated Body Condition Scoring System Using 3d Imaging, Niall O'Leary, Lorenzo Leso, Frank Buckley, Jonathon Kenneally, True North Technologies, Shannon Business Centre, Shannon, Clare, Ireland;, Laurence Shalloo

Publications

Body condition scores (BCS) measure a cow’s fat reserves and is important for management and research. Manual BCS assessment is subjective, time-consuming, and requires trained personnel. The BodyMat F (BMF, Ingenera SA, Cureglia, Switzerland) is an automated body condition scoring system using a 3D sensor to estimate BCS. This study assesses the BMF. One hundred and three Holstein Friesian cows were assessed by the BMF and two assessors throughout a lactation. The BMF output is in the 0–5 scale commonly used in France. We develop and report the first equation to convert these scores to the 1–5 scale used by …

The Value Of Iaq: A Review Of The Scientific Evidence Supporting The Benefits Of Investing In Better Indoor Air Quality, Vickie R. Hawkins,, Cheryl L. Marcham, John P. Springston, J. David Miller, Geoffrey Braybrooke, Craig Maunder, Lydia Feng, Ben Kollmeyer

Publications

Other studies have examined how ventilation rates, combined with the presence of pollutant sources, can affect productivity. These studies provide evidence that increased ventilation, including increases above common guidance levels such as ASHRAE’s ventilation standards, improve occupant productivity. Increased occupant control over ventilation has also been shown to improve productivity. Higher indoor carbon dioxide (CO2) levels have been directly associated with impaired work performance and increased health symptoms. Historically, it was believed that these associations exist only because higher indoor CO2 concentrations, resulting from lower outdoor air ventilation rates, are also correlated with higher levels of other indoor-generated pollutants that …

Toxoplasma Gondii Requires Its Plant-Like Heme Biosynthesis Pathway For Infection, Amy Bergmann, Kathleen Floyd, Melanie Key, Carly Dameron, Kerrick C. Rees, L. Brock Thornton, Daniel C. Whitehead, Iqbal Hamza, Zhicheng Dou

Publications

Heme, an iron-containing organic ring, is essential for virtually all living organisms by serving as a prosthetic group in proteins that function in diverse cellular activities ranging from diatomic gas transport and sensing, to mitochondrial respiration, to detoxification. Cellular heme levels in microbial pathogens can be a composite of endogenous de novo synthesis or exogenous uptake of heme or heme synthesis intermediates. Intracellular pathogenic microbes switch routes for heme supply when heme availability fluctuates in their replicative environment throughout infection. Here, we show that Toxoplasma gondii, an obligate intracellular human pathogen, encodes a functional heme biosynthesis pathway. A chloroplast-derived …

Energy Dissipation Of Type A Piano Key Weirs, Kam R. Eslinger, Brian M. Crookston

Publications

A Piano Key weir (PK weir) is a nonlinear, labyrinth-type weir well suited for rehabilitation projects due to a relatively small footprint and the ability to pass large discharges for lesser upstream-head values when compared with other weir types. A critical component of a hydraulic structure is the energy-dissipative properties. Currently, information and guidance is limited, with previous energy dissipation studies of PK weirs primarily of specific projects. Therefore, to document and quantify energy dissipation, four laboratory-scale Type A PK weir models with different width ratios (W_i/W_o) were studied, with 255 tests comprising this new …

Comparative Lipidomic Analysis Reveals Heat Stress Responses Of Two Soybean Genotypes Differing In Temperature Sensitivity, Sruthi Narayanan, Zolian S. Zoong Lwe, Nitant Gandhi, Ruth Welti, Benjamin Fallen, James R. Smith, Sachin Rustgi

Publications

Heat-induced changes in lipidome and their influence on stress adaptation are not well-defined in plants. We investigated if lipid metabolic changes contribute to differences in heat stress responses in a heat-tolerant soybean genotype DS25-1 and a heat-susceptible soybean genotype DT97-4290. Both genotypes were grown at optimal temperatures (OT; 30/20 °C) for 15 days. Subsequently, half of the plants were exposed to heat stress (38/28 °C) for 11 days, and the rest were kept at OT. Leaf samples were collected for lipid and RNA extractions on the 9^th and 11^th days of stress, respectively. We observed a decline in …

Gender Differences In Diet-Induced Steatotic Disease In Cyp2b-Null Mice, Melissa M. Heintz, Rebecca Mcree, Ramiya Kumar, William S. Baldwin

Publications

Nonalcoholic fatty liver disease (NAFLD) is the most common liver disease; however, progression to nonalcoholic steatohepatitis (NASH) is associated with most adverse outcomes. CYP2B metabolizes multiple xeno- and endobiotics, and male Cyp2b-null mice are diet-induced obese (DIO) with increased NAFLD. However, the DIO study was not performed long enough to assess progression to NASH. Therefore, to assess the role of Cyp2b in fatty liver disease progression from NAFLD to NASH, we treated wildtype (WT) and Cyp2b-null mice with a normal diet (ND) or choline-deficient, L-amino acid-defined high fat diet (CDAHFD) for 8 weeks and determined metabolic and molecular changes. CDAHFD-fed …

Comparative Transcriptome Profiling Provides Insights Into Plant Salt Tolerance In Seashore Paspalum (Paspalum Vaginatum), Peipei Wu, Steven Cogill, Yijian Qiu, Zhigang Li, Man Zhou, Qian Hu, Zhihui Chang, Hong Luo, Rooksana E. Noorai, Xiaoxia Xia, Christopher Saski, Paul Raymer

Publications

Background

Seashore paspalum (Paspalum vaginatum), a halophytic warm-seasoned perennial grass, is tolerant of many environmental stresses, especially salt stress. To investigate molecular mechanisms underlying salinity tolerance in seashore paspalum, physiological characteristics and global transcription profiles of highly (Supreme) and moderately (Parish) salinity-tolerant cultivars under normal and salt stressed conditions were analyzed.

Results

Physiological characterization comparing highly (Supreme) and moderately (Parish) salinity-tolerant cultivars revealed that Supreme’s higher salinity tolerance is associated with higher Na+ and Ca2+ accumulation under normal conditions and further increase of Na+ under salt-treated conditions (400 mM NaCl), possibly by vacuolar sequestration. Moreover, K+ retention under …

Lionfish (Pterois Volitans) As Biomonitoring Species For Oil Pollution Effects In Coral Reef Ecosystems, Peter Van Den Hurk, Ian Edhlund, Ryan David, Jacob J. Hahn, Michel J. Mccomb, Elizabeth L. Rogers, Emily Pisarski, Katy Chung, Marie Delorenzo

Publications

With oil spills, and other sources of aromatic hydrocarbons, being a continuous threat to coral reef systems, and most reef fish species being protected or difficult to collect, the use of the invasive lionfish (Pterois volitans) might be a good model species to monitor biomarkers in potentially exposed fish in the Caribbean and western Atlantic. The rapid expansion of lionfish in the Caribbean and western Atlantic, and the unregulated fishing for this species, would make the lionfish a suitable candidate as biomonitoring species for oil pollution effects. However, to date little has been published about the responses of …

Trait Differentiation And Modular Toxin Expression In Palm-Pitvipers, Andrew J. Mason, Mark J. Margres, Jason L. Strickland, Darin R. Rokyta, Mahmood Sasa, Christopher L. Parkinson

Publications

Background

Modularity is the tendency for systems to organize into semi-independent units and can be a key to the evolution and diversification of complex biological systems. Snake venoms are highly variable modular systems that exhibit extreme diversification even across very short time scales. One well-studied venom phenotype dichotomy is a trade-off between neurotoxicity versus hemotoxicity that occurs through the high expression of a heterodimeric neurotoxic phospholipase A2 (PLA2) or snake venom metalloproteinases (SVMPs). We tested whether the variation in these venom phenotypes could occur via variation in regulatory sub-modules through comparative venom gland transcriptomics of representative Black-Speckled Palm-Pitvipers (Bothriechis …

Hydrods: Data Services In Support Of Physically Based, Distributed Hydrological Models, Tseganeh Zekiewos Gichamo, Nazmus S. Sazib, David G. Tarboton, Pabitra Dash

Publications

Physically based distributed hydrologic models require geospatial and time-series data that take considerable time and effort in processing them into model inputs. Tools that automate and speed up input processing facilitate the application of these models. In this study, we developed a set of web-based data services called HydroDS to provide hydrologic data processing ‘software as a service.’ HydroDS provides functions for processing watershed, terrain, canopy, climate, and soil data. The services are accessed through a Python client library that facilitates developing simple but effective data processing workflows with Python. Evaluations of HydroDS by setting up the Utah Energy Balance …

Wildlife Hazards At Airports: A Practical Review, Robert Sliwinski, Flavio A. C. Mendonca

Publications

Globally, aircraft accidents and incidents due to wildlife strikes are an increasingly serious safety concern;

Airport operators have a professional and legal responsibility to provide an environment conducive to safe aircraft operations;

Airport operators and managers have been sued for property damage and / or for human injuries and death in the aftermath of aircraft accidents due to wildlife strikes.

Comparison Study Of Mold Growth Resistance Of Plastic Based Material Flooring (Pbm Flooring) And Ceramic Tile Flooring, Jyothi Rangineni, Jeremy Tzeng

Publications

Clemson University Department of Biological Sciences and Tile Council of North America Product Performance Testing Laboratory evaluated whether ceramic tile and Plastic Based Material (PBM¹) flooring support mold growth when exposed to fungal spores.

Mold grows in moisture-rich environments and requires only minimal sources of nutrition to support growth. It has long been identified to cause damage to buildings and construction materials and its presence in buildings has been connected to many major health concerns with various studies and reviews published on this matter.²

The method used to evaluate mold growth was ASTM G21-96 (2015).³ This …

Discovery Of Genomic Variations By Whole-Genome Resequencing Of The North American Araucana Chicken, Rooksana E. Noorai, Vijay Shankar, Nowlan H. Freese, Christopher M. Gregorski, Susan C. Chapman

Publications

Gallus gallus (chicken) is phenotypically diverse, with over 60 recognized breeds, among the myriad species within the Aves lineage. Domestic chickens have been under artificial selection by humans for thousands of years for agricultural purposes. The North American Araucana (NAA) breed arose as a cross between the Chilean “Collonocas” that laid blue eggs and was rumpless and the “Quetros” that had unusual tufts but with tail. NAAs were introduced from South America in the 1940s and have been kept as show birds by enthusiasts since then due to several distinctive traits: laying eggs with blue eggshells, characteristic ear-tufts, a pea …

Gluten Detection Methods And Their Critical Role In Assuring Safe Diets For Celiac Patients, Claudia E. Osorio, Jaime H. Mejias, Sachin Rustgi

Publications

Celiac disease, wheat sensitivity, and allergy represent three different reactions, which may occur in genetically predisposed individuals on the ingestion of wheat and derived products with various manifestations. Improvements in the disease diagnostics and understanding of disease etiology unveiled that these disorders are widespread around the globe affecting about 7% of the population. The only known treatment so far is a life-long gluten-free diet, which is almost impossible to follow because of the contamination of allegedly “gluten-free” products. Accidental contamination of inherently gluten-free products could take place at any level from field to shelf because of the ubiquity of these …

Mitigating The Risk Of Bird Strikes: The Use Of Virtual Reality During Flight Training, Flavio A. C. Mendonca Ph.D., Julius Keller Ph.D., Chien-Tsung Lu, Chenyu Huang Ph.D.

Publications

There were 193,969 wildlife strikes in the US from 1990 through 2017. Wildlife strikes annually cost the US civil aviation industry, on average, $186 million in monetary losses and 111,284 hours of aircraft downtime (Dolbeer & Begier, 2019). According to the Federal Aviation Administration (FAA), Aeronautical Decision-Making (ADM) is a systematic approach that encourages pilots to identify hazards and manage risks (FAA, 2016). Additionally, it helps aviators to make timely and safe decisions. Even though it is practically impossible to eliminate the risk of bird strikes, crewmembers play a vital role in the accident prevention process (Mendonca, Carney, & Fanjoy, …

The Next Frontier: Making Research More Reproducible, David E. Rosenberg, Yves Fillion, Rebecca L. Teasley, Samuel Sandoval-Solis, Jory S. Hecht, Jakobus E. Van Zyl, George F. Mcmahon, Jeffery S. Horsburgh, Joseph R. Kasprzyk, David G. Tarboton

Publications

Science and engineering rest on the concept of reproducibility. An important question for any study is: are the results reproducible? Can the results be recreated independently by other researchers or professionals? Research results need to be independently reproduced and validated before they are accepted as fact or theory. Across numerous fields like psychology, computer systems, and water resources there are problems to reproduce research results (Aarts et al. 2015; Collberg et al. 2014; Hutton et al. 2016; Stagge et al. 2019; Stodden et al. 2018). This editorial examines the challenges to reproduce research results and suggests community practices to overcome …

Beaver Dam Influences On Streamflow Hydraulic Properties And Thermal Regimes, Milada Majerova, Bethany T. Neilson, Brett B. Roper

Publications

Beaver dams alter channel hydraulics which in turn change the geomorphic templates of streams. Variability in geomorphic units, the building blocks of stream systems, and water temperature, critical to stream ecological function, define habitat heterogeneity and availability. While prior research has shown the impact of beaver dams on stream hydraulics, geomorphic template, or temperature, the connections or feedbacks between these habitat measures are not well understood. This has left questions regarding relationships between temperature variability at different spatial scales to hydraulic properties such as flow depth and velocity that are dependent on the geomorphology. We combine detailed predicted hydraulic properties, …

Gravity As A Continuum: Effects Of Altered Gravity On Drosophila Melanogaster Immunity, Amber M. Paul, Joe Olivieri, Sharmila Bhattacharya

Publications

The impact of spaceflight on immune function is undoubtedly a critical focus in the area of space biology and human health research. Heat shock proteins (Hsp) are an evolutionarily conserved family of proteins that are expressed in response to cellular and physiological stressors, experienced during radiation exposure, confinement, circadian rhythm disruption, and altered gravity (hypergravity experienced at launch/landing and microgravity experienced in-flight). In particular, Hsp70 aids in the folding of proteins, facilitates the movement of proteins across the membranes during signal transductions and can stimulate innate immunity. Since Hsp70 is induced during cellular stress, and can act as a stimulator …

Modeled Microgravity Induces Neutrophil Extracellular Trap (Net)Osis Formation And Reduced Phagocytosis Of Polymorphonuclear Neutrophils, Amber M. Paul

Publications

Spaceflight can dysregulate immunity, by way of increasing granulocytes numbers with impaired function. Polymorphonuclear neutrophils (PMN) are granulocytes that are first responders to infection or injury, and consist of the largest pool of immune cells in humans. PMNs function during innate immunity, through phagocytosis and promotion of inflammation, via the release of reactive oxygen species (ROS) mediators and granule-containing enzymes, such as myeloperoxidase (MPO) and NADPH oxidase-2 (NOX-2). In addition, neutrophil extracellular trap (NET) formation is another mechanism of PMN surveillance that works independently of engulfment phagocytosis, and is a last resort function that can induce NETosis or PMN-specific cell …

Characterization Of Sensory And Shelter Enrichment In The Rodent Research Habitat, Amber M. Paul, Yasaman Shirazi-Fard, America Reyes, Moniece Lowe, Margareth Cheng-Campbell, Sungshin Choi, Eduardo Almeida, April Ronca, Ruth K. Globus

Publications

The ISS provides a platform for conducting Rodent Research (RR) in microgravity and 9 missions have been successfully conducted. The results from these experiments have begun to provide new insights into the effects of spaceflight on mammalian physiological systems. After RR-1-4, the Flight IACUC required inclusion of additional cage enrichment into the Rodent Habitats (RH) to “enhance animal well-being by providing animals with sensory and motor stimulation, through structures and resources that facilitate the expression of species typical behaviors”. A Hut, in the form of a rigid, mesh igloo-like shelter was implemented beginning with RR-5. The potential influence of the …

An Analysis Of Common Forest Management Practices For Carbon Sequestration In South Carolina, Lucas Clay, Marzieh Motallebi, Bo Song

Publications

South Carolina (SC) has a variety of different forest types, and they all have potential to sequester a certain amount of carbon. Private forest landowners control a significant portion of the overall forestland in SC, and their management efforts can maintain or improve forest carbon stocks. Currently, the second largest carbon market in the world is the California Carbon Market, which gives a monetary value to sequestered carbon. One carbon credit is equal to one metric ton of carbon and is currently worth around $15.00. Forest management plans are geared toward increasing carbon sequestration over time. This study aims to …

Influence Of Social Isolation During Prolonged Simulated Weightlessness By Hindlimb Unloading, Candice G.T. Tahimic, Amber M. Paul, Ann-Sofie Schreurs, Samantha M. Torres, Linda Rubinstein, Sonette Steczina

Publications

The hindlimb unloading (HU) model has been used extensively to simulate the cephalad fluid shift and musculoskeletal disuse observed in spaceflight with its application expanding to study immune, cardiovascular and central nervous system responses, among others. Most HU studies are performed with singly housed animals, although social isolation also can substantially impact behavior and physiology, and therefore may confound HU experimental results. Other HU variants that allow for paired housing have been developed although no systematic assessment has been made to understand the effects of social isolation on HU outcomes. Hence, we aimed to determine the contribution of social isolation …

Integrative Neuromuscular Training In Young Athletes, Injury Prevention, And Performance Optimization: A Systematic Review, Borja Sañudo, Juan Sánchez-Hernández, Mario Bernardo-Filho, Ellie Abdi, Redha Taiar, Javier Núñez

Publications

The aim of this systematic review was to evaluate the current evidence by assessing the effectiveness of integrative neuromuscular training programs in injury prevention and sports performance in young athletes. Different data sources were analyzed up to January 2018. Eligible studies contained information on population (young athletes), intervention (neuromuscular training), comparator (control group or another exercise intervention), outcomes (injury prevention or sport performance), and study design (randomized trials or prospective studies). The trials were restricted based on the language (English) and for publication date (after 1 January 2007). Fourteen randomized controlled trials were included: Seven included dynamic stability-related outcomes. Three …

Use Of Low-Cost Ambient Particulate Sensors In Nablus, Palestine With Application To The Assessment Of Regional Dust Storms, Abdelhaleem Khader, Randal S. Martin

Publications

Few air pollutant studies within the Palestinian territories have been reported in the literature. In March–April and May–June of 2018, three low-cost, locally calibrated particulate monitors (AirU’s) were deployed at different elevations and source areas throughout the city of Nablus in Northern West Bank, Palestine. During each of the three-week periods, high but site-to-site similar particulate matter less than 2.5 µm in aerodynamic diameter (PM_2.5) and less than 10 µm (PM₁₀) concentrations were observed. The PM_2.5 concentrations at the three sampling locations and during both sampling periods averaged 38.2 ± 3.6 µg/m³, well …