Life Sciences Commons^™

Identifying Priority Conservation Areas And Strategies For Myotis Sodalis (Chiroptera: Vespertilionidae) Via Habitat And Connectivity Modeling, Ashleigh B. Cable

Masters Theses

Myotis sodalis, the Indiana bat, is a federally endangered bat species in the United States of America (USA). Conservation efforts are typically focused at identified maternity sites at local scales, however, the species is a regional migrant that interacts with its environment at multiple spatial scales. We are limited in our knowledge of landscape-level requirements of this species, especially in large areas such as Illinois, USA, where a wide range of environmental and landscape conditions exist. Many previous M. sodalis habitat studies have limited their focus to smaller spatial scales. Due to limitations in funding, personnel, and time, it …

Evaluation Of Intra-Species Diversity Of Oxalobacter Formigenes Strains Using Pulsed-Field Gel Electrophoresis (Pfge) And Multiplex Pcr, Nivedita Pareek

Masters Theses

Oxalobacter formigenes is a beneficial, strict anaerobic gut bacterium that plays an important role in the prevention of kidney stone disease with a unique characteristic of using only oxalate as a carbon and energy source. To date, twenty-one strains of O. formigenes have been isolated which are further divided into two groups based on differences in the patterns of cell membrane lipids, cellular proteins, and nucleic acid fragments. The objective of the study was to evaluate intra-species diversity of O. formigenes strains using pulsed-field gel electrophoresis (PFGE) and multiplex PCR.

Nine pure cultures of O. formigenes strains (5 strains group …

An Assessment Of Night Time And Seasonal Electrofishing In The Lower Wabash River, Eric Christopher Hine

Masters Theses

Large rivers are highly important systems; being exploited both commercially and recreationally. Because of this usage by humans, close monitoring of the ecology of theses rivers is of the utmost importance. The Long-Term Electrofishing project (LTEF) monitors the fish communities of the Illinois, Mississippi, Wabash, and Ohio rivers using day time, pulsed-DC electrofishing during the late Spring through the early Fall each year. Given that previous studies have noted diel and seasonal changes in catch and composition of fish communities, the addition of night time electrofishing may be beneficial to the overarching goals of the LTEF. This study sought to …

Xylan Metabolism By Caulobacter Crescentus, Viet Bui

Masters Theses

Bacteria present unique opportunities to explore the molecular mechanisms of nutrient acquisition processes at single cell level under various experimental conditions. Caulobacter crescentus is a gram-negative oligotrophic environmental bacterium with adaptive physiological responses, such as slow growth or complete arrest of cell cycle, presence of sessile and motile progenies with the sessile cells growing stalk to enhance nutrient uptake for growth in low-nutrient conditions. Details of plant polysaccharide-derived carbon compound, such as cellobiose, maltose, and xylose utilization by C. crescentus can be found but molecular details or mechanisms of polysaccharide utilization, such as xylan, has not been reported. Database analyses …

A Genome Wide Survey Of The Insertion Sequences In Halanaerobium Hydrogeniformans, A Haloalkaliphilic Anaerobic Bacterium, Kody Austin Bassett

Masters Theses

"Insertion sequences (IS) are the smallest prokaryotic transposable elements. These mobile genes are highly diverse in size and structure, making them difficult to study. The transposition activity of insertion sequences has a significant role in evolution by enabling genomic plasticity via genome rearrangements. Insertion sequences are largely uncharacterized and thus methods to improve the ability to accurately identify, annotate, and infer genomic impact of insertion sequences is limited. A sequential set of methods using readily available genomic and bioinformatic tools was developed to accurately identify insertion sequences. This method was used to perform an entire genome survey of Halanaerobium hydrogeniformans …

Soy- Based Flexographic Ink For Linerboard Printing, Rahul Ramchandra Pingale

Masters Theses

Many printing inks use volatile solvents in the formulation, which are hazardous to the environment from emission of VOC’s and at the same time, synthetic resins in these inks are not biodegradable. These problems with the fluctuating and rising price of petroleum are main reasons to look for new resources for making more environmentally friendly printing inks. The majority of the commercially available water based inks are formulated based on using acrylic resins, synthetic colorants, solvents/water and additives, which are the common main components for formulating printing inks. In this research, soy proteins were tested for their suitability to partially …

14-3-3 Protein Rad24 And Its Effect On Mid1 Localization And Contractile Acto- Myosin Ring Assembly During Cytokinesis In S. Pombe, Anissa P. Grawe

Masters Theses

In animal and yeast cells, cell division (cytokinesis) is facilitated by the formation of a contractile acto-myosin ring (CAR). Proper CAR formation and constriction is heavily reliant on the temporal regulation, phosphorylation, and localization of key proteins. In the fission yeast S. pombe, Mid1 is an important dimeric CAR scaffolding protein that connects the contractile apparatus to the plasma membrane at the right place and time during cytokinesis. Mid1 is confined to both the nucleus and protein assemblies called nodes during interphase, and transitions to the cell cortex at mitotic entry as nodes mature and coalesce into the CAR. Rad24 …

Effects Of Fire Season And Temperature On A Spotted Knapweed (Centaurea Stoebe) Infested Grassland, Zachery T. Pitman

Masters Theses

Invasive species, including the non-native forb Centaurea stoebe (spotted knapweed), constitute an imminent threat to degraded and restored native prairies. Considering the major threat that C. stoebe poses to imperiled prairie ecosystems, I examined the effectiveness of fire as a control agent of C. stoebe and (±)-catechin. I conducted a 2-year experiment in part of a restored tallgrass prairie community at Pierce Cedar Creek Institute in Barry County, Michigan between May and August of 2016 and 2017. My experiment consisted of individually burning 60 1-m² plots with a propane torch to achieve high (316° C) and low (103° C) temperatures …

Occupancy And Detection Of Yellow Perch In Great Lakes Coastal Wetlands, Kaitlyn M. Dykstra

Masters Theses

Accurately estimating the distribution of a species is important for managing sustainable populations of fishes. The Yellow Perch Perca flavescens is an important sport fish in the Great Lakes region and one of the most abundant fishes in Great Lakes coastal wetlands, which they commonly use for spawning and nursery habitat. Many fisheries management decisions are based on results from sampling fish assemblages, but these methods rarely account for incomplete detection (i.e., presence of a species that is not detected by sampling), which could create biased results. We applied the method of occupancy modeling, which accounts for incomplete detection, to …

Impacts Of Sediment Dredging On Phosphorus Dynamics In A Restored Riparian Wetland, Kimberly Oldenborg

Masters Theses

Global reductions in biodiversity and water quality are having major consequences for ecosystem health and societal well-being. The restoration of riverine floodplains and wetlands provides an ideal opportunity to increase biodiversity and water quality because their hydrologic connectivity to adjacent streams and rivers promotes the formation of heterogeneous habitat while also facilitating their functioning as a nutrient sink, in general. However, many historic floodplains and riverine wetlands have been drained for the creation of agricultural land, resulting in an accumulation of nutrients in the soils. Therefore, restoration practices that hydrologically reconnect former agricultural land to an adjacent stream or river …

Assessment Of Invasive Gypsophila Paniculata Control Methods In The Northwest Michigan Dunes, Emma K. Rice

Masters Theses

Gypsophila paniculata is an invasive species in Michigan’s northern lower peninsula and a problem invasive in much of the northern United States and Canada. Gypsophila paniculata readily outcompetes native plants in sandy, well-drained soils due to its deep taproot, which allows access to scarce resources. It reproduces and disperses mainly by seed, but the phenology of seed maturation is poorly understood. Gypsophila paniculata is of particular concern in lakeshore dunes because the areas where it is most dense are also populated by several endemic and threatened species. Despite many years of intensive management, high densities of G. paniculata persist …

Estimating Components Of Stream Metabolism Using The Free Water Dissolved Oxygen Method, Jay R. Zuidema Jr.

Masters Theses

Stream ecosystem metabolism is commonly measured in stream ecology studies in order to understand the functioning of the stream ecosystem and as an indicator of stream health. One common method for gathering the time series data required to estimate stream metabolism is the free water dissolved oxygen method, which involves measuring dissolved oxygen in freely moving water. This is accomplished by taking measurements at a single location (one-station monitoring method) or at two locations (two-station monitoring method). In conjunction with these data, a process-based model of dissolved oxygen dynamics is used to estimate gross primary production, respiration, and net production. …

Investigating Erosion And Ecological Impacts To An Urban Coldwater Stream Using Multiple Techniques, Daniel T. L. Myers

Masters Theses

Sediment pollution is a major cause of stream degradation. Our objectives were threefold. First, we assessed the impacts of environmental stressors on the structure of fish and macroinvertebrate communities across a gradient of agricultural to urban land cover in a coldwater tributary of the Grand River, Michigan, USA called Indian Mill Creek. We found that instream woody debris, streambed substrate, riffle and pool habitat variability, and riparian conditions affected aquatic macroinvertebrates along an agricultural to urban land cover gradient. We also found that variation in fish community assemblage was driven largely by stream flow and temperature regimes and could be …

Environmental Factors Influencing Amphibian Community Assemblage In Dune Wetlands On The Lake Michigan Coast, Alex H. Jouney

Masters Theses

Wetlands in dune landscapes provide important breeding habitat for amphibians along the Lake Michigan Coast. Unfortunately, these unique habitats and the corresponding amphibian metapopulations are understudied and threatened. We assessed amphibian species richness and terrestrial habitat type in 16 permanent and ephemeral wetlands along the coast of Lake Michigan in Grand Haven, MI. Wetland area, terrestrial habitat type, depth, hydroperiod, shade, and degree of isolation were measured from April to September of 2017. Nine species of amphibian were found; Green Frog (Rana clamitans melanota) and Spring Peepers (Pseudacris crucifer crucifer) were most abundant and Fowlers Toad …

Genetic Structure Of Invasive Baby’S Breath (Gypsophila Paniculata) Populations In A Michigan Dune System, Hailee B. Leimbach-Maus

Masters Theses

Invasive species can reduce biodiversity of a system by outcompeting native species for resources, changing the physical characteristics of a habitat, and altering natural disturbance regimes. Coastal sand dune ecosystems are dynamic with elevated levels of disturbance, and as such they are highly susceptible to plant invasions. The topography, geographic distribution of preferred habitat, and disturbance regime in an ecosystem can influence where an invasive plant becomes established, its dispersal patterns, and how densely it grows. One such invasion that is of major concern to the Great Lakes dune systems is baby’s breath (Gypsophila paniculata). The invasion of …

Effects Of Instability On Core Muscle Activation In A Side Bridge, Erin E. Kishman

Masters Theses

Training the musculature of the core continues to be perceived as an essential component of conditioning and rehabilitation settings (11). A popular way to train the core is with the use of instability devices, such as Swiss ball or suspension trainer. However, there is limited research on the effects of these devices on core muscle activity. The purpose of this study was to examine core muscle activity during side bridge variations with and without instability devices (Floor, Swiss Ball, and TRX) through electromyography (EMG) of the rectus abdominis, external oblique, erector spinae, and latissimus dorsi. 39 participants performed three variations …

The Effect Of Team Sports In Classical, Christian Education, Hannah Grey

Masters Theses

Antoine de Saint-Exupery once noted if you want to build a ship, don’t drum up the men to gather wood, divide the work, and give orders. Instead, teach them to yearn for the vast and endless sea (“A quote by Antoine de Saint-Exupery,” n.d.). This quote embodies the goal of classical education, but it also parallels the values taught in sport. There has been a resurgence of classical education in recent years, and these new schools are focusing on instilling in students a love for learning, a passion for truth and beauty, and a simultaneous prudent understanding of and appreciation …

Plant U-Box Proteins 25 And 26 Are Involved In Regulation Of Crosstalk Between Salicylate And Jasmonate Signaling Pathways, Dustin C. Rowland

Masters Theses

The jasmonic (JA) and salicylic acid (SA) signaling systems regulate diverse plant developmental processes and immune responses. Due to the opposite end-goals of various pathogen-response pathways, a certain level of antagonism between the JA and SA pathways is required. However, over-suppression of any single pathway would leave a plant susceptible to invasion by a specific class of pathogen. We investigate the regulation of crosstalk between the JA- and SA-mediated immune pathways and how the dilemma of specific susceptibility may be avoided. Manipulation of Arabidopsis thaliana genotypes was utilized to determine the effects of protein knockout on pathogen-specific susceptibility and resistance. …

Validation Of A Water Quality Index For Lake Erie, Vaclava Hazukova

Masters Theses

This study validates a water quality index based on a diatom total phosphorus transfer function for monitoring of the Lake Erie’s pelagic zone. Lake Erie is again under the threat of cultural eutrophication, mostly due to the runoff of nutrients from the surrounding farmlands. Therefore, it is an issue of high importance to continue monitoring efforts in Lake Erie to assess further deterioration or progressive changes due to the restoration management practices. Diatom-biomonitoring represents one of the efficient and well-crafted tools to assess the actual conditions. However, indices of water quality based on diatom transfer functions are often used without …

Spectral Discrimination Of Phragmites Australis At Different Phenological Stages In Saginaw Bay, Michigan, Trenton Benedict

Masters Theses

Michigan Great Lakes wetlands are among Michigan’s most significant bio-diversified ecosystems. One threat to this ecosystem is invasive species. Phragmites australis is one of these invasive species creating problems in the wetlands. Identifying Phragmites through satellite imagery creates difficulties in discriminating Phragmites from other vegetation accurately. This study used an ASD HandHeld 2 field spectroradiometer to identify the phenological spectral properties between Phragmites and cattails. The Euclidean distance was analyzed the spectral curves from the spectroradiometer to determine the separability between Phragmites and cattails. The largest Euclidean distance determined the best month to separate the spectral signatures of Phragmites and …

Home-Range Dynamics And Resource Selection Of American Marten (Martes Americana) In Michigan’S Northern Lower Peninsula, Angela Kujawa

Masters Theses

American marten (Martes americana) are typically associated with mature coniferous forests. Marten were extirpated from Michigan’s Lower Peninsula due to human impacts, such as fire, logging, and over-harvest. Little is known about the resource selection and distribution of marten in Michigan’s northern Lower Peninsula since their reintroduction in 1985-86. Resource selection functions are valuable tools to estimate the relative probability an animal will utilize an area and predict where they may occur. When creating a resource selection function, potential sources of variation in data collection methods and wildlife populations should be considered to ensure accurate results. We sought …

Characterization Of Pinitol Catabolism In Sinorhizobium Meliloti And Its Role In Nodule Occupancy, Angela Irene Kennedy-Mendez

Masters Theses

Sinorhizobium meliloti, which is the nitrogen fixing symbiont of Medicago sativa (alfalfa), was used to test the hypothesis that D-chiro-inositol is an intermediate of pinitol catabolism and that pinitol catabolism plays a role in S. melilot s ability to compete for nodule occupancy. An analytical method, involving gas chromatography and mass spectrometry (GCMS), was developed to detect and separate pinitol and D-chiro-inositol. The S. meliloti wild type, and three isogenic mutant strains (idhA, mocD, and mocE) were grown in minimal medium with pinitol and pinitol plus glycerol. The S. meliloti wild type can utilize pinitol as a sole carbon source, …

Enhancement Of Fast Scan Cyclic Voltammetry Detection Of Dopamine With Tryptophan, Sarah E. Thompson

Masters Theses

Dysregulation of dopamine release is a pathological effect of common neurodegenerative diseases, including Alzheimer’s disease and Parkinson’s disease. Fast scan cyclic voltammetry (FSCV) has been used as an analytical tool to investigate the role of dopamine in these diseases, and in relation to drug addiction and reward behavior. Methods to improve the sensitivity of FSCV have involved modifying the surface of the carbon electrodes used for dopamine detection, altering the potential waveform, and changing the structure of the carbon sensor. Here, the amino acid tryptophan was investigated as a potential surface modification for increased dopamine detection. This study serves as …

Nutrient Conservation Trait Responses Of Low Resource Adapted Chaparral Shrubs To Increased Resource Availability, Reina Lee Nielsen

Masters Theses

Traits that increase mean nutrient retention times are essential to plant performance in low resource environments, where multiple stressors (low water and nutrients) are present. Although physiological responses to either water or nutrient stress are well understood, fewer studies have investigated the interaction of these stressors from a phylogenetically-controlled, whole-plant perspective. This research focused on three, phylogenetically-controlled pairs of shrubby evergreen species from the California chaparral that either grow on or off serpentine soils, which differ in nutrient availability. Using greenhouse and field studies, the responses of these plants to altered water and nutrient availability were evaluated. The greenhouse study …

Chemotaxis Of Batrachochytrium Dendrobatidis Zoospores In Response To Live Amphibians, David Bartholow

Masters Theses

Batrachochytrium dendrobatidis (Bd) is one of the primary drivers of amphibian decline, and has spread rapidly on a global scale, but the mechanisms of Bd movement on small spatial scales are poorly understood and may play a role in transmission and infection. The flagellated zoospores of this fungus exhibit chemotaxis in response to single chemical cues, towards potential nutrient sources and away from metabolites of anti-fungal bacteria (AFB) present on amphibian skin. Levels of cutaneous AFB were manipulated on Eurycea bislineata hosts (either by bathing in a culture of the AFB Janthinobacterium lividum, or bathing in antibiotics) …

Biotransformation Of Oxo-Bile Acids Derivatives By Human Gut Bacteria, Laina Sallam

Masters Theses

Bile acids are one group of steroids that can be metabolically transformed by human gut anaerobes. One of these transformations is the conversion of primary bile acids to secondary bile acids by 7α-dehydroxylating gut bacteria such as Clostridium scindens, Clostridium hylemonae, and Clostridium hiranonis. These anaerobes metabolize bile acid derivatives via 3α- and 7α-hydroxysteroid dehydrogenases (HSDH). Studies to date have not reported if these organisms are capable of converting 12-oxolithocholic acid (12-oxoLCA) to deoxycholic acid (DCA). The emphasis of this study was to determine the ability of C. scindens ATCC 35704, C. hiranonis DSM 13275, and C. …

The Role Of Prrx1 And Snai2 As Master Regulators Of Fibroblast Identity, Huda A. Alzahrani

Masters Theses

Mammalian development involves a complex system of regulatory signals and reactions, leading to the creation of distinct tissues with specific structures and functions controlled by various gene expression profiles. Tissue-specific gene expression is by controlled specific combinations of transcription factors and cofactors that dictate cell differentiation via activation and repression of genes in mammalian cells.

Whole genome microarray analyses of fibroblasts have revealed candidate genes that may serve as master regulators of fibroblast identity, such as Prrx1 and Snai2, that activate downstream genes such as Bmp3, Twist, Shox2, Cfos, Slug, Sema3A, Spp1, and Col1a1. A previous study showed that Prrx1 …

Medicinal Properties Of Cyperus Species (Sedge Family, Cyperaceae), Lata Maishaya Udari

Masters Theses

The grasses that yield therapeutically important products are among the least studied in the Cyperaceae family. Herb-based medicine from ancient times have played a vital role in ailments of various disease and nowadays it has been a particular area of interest in medicine. Phytochemicals are inherent compounds derived from plants that are biologically active, non-nutritive chemicals that act as a defensive or prophylactic medicine in humans. Their extracts have proven to show inhibition properties against different microbes. Despite the prevalence of Cyperus species and their traditional use in medicine, the chemical components responsible for their attributes remain largely unknown. This …

Effects Of Main-Stem Impoundments On Hydrology And Larval Fish Communities In Major Tributaries Of Two Large Midwestern Rivers, Jordan Pesik

Masters Theses

Anthropogenic modifications, like impoundments, have altered natural environmental conditions in most lotic systems and impacted fish ecology in many ways. We examined the effect of large river impoundments on fish reproductive behavior by studying the larval fish communities in tributaries of the impounded Illinois and unimpounded Wabash Rivers. We hypothesized that larval fish communities would be similar between the geographically proximal systems, but temporal structuring would depend largely on flow regimes. Biweekly larval densities were greatest among all taxa in the Wabash system, though overall communities were similar between systems. Of the six tributaries, the four smallest rivers were most …

Co-Product Potential Of Algae Biocake, Elizabeth J. Nixon

Masters Theses

Society needs to find replacements for fossil fuels, which are finite resources that may be fully depleted within a few generations. While solar and wind have great potential as alternative energy sources, they are unlikely to completely replace all of the current fuel sources, particularly liquid fuels. Plant biomass has great potential for this market, and is already used in many forms for heat energy (e.g. direct combustion). However, the bulk density of important bioenergy crops, particularly grasses, is often low, which necessitates the use of binders in densification strategies. In the present study, waste algae biocake from a proprietary …