Life Sciences Commons^™

Benthic Macroinvertebrate Pre-Assessment Of A Proposed Restoration In The Grand River, Grand Rapids, Mi, Usa, Matthew L. Bain

Masters Theses

River restoration is the dominant field of applied water resources management in the United States. Ecological improvement should be the goal of all river restorations, though many restoration projects fail to produce positive results due to limited scope or inadequate assessment methodologies. Pre-restoration, biotic data is essential for such projects as it can be paired with post-restoration data to gauge ecological outcomes. A major restoration effort is now underway in Michigan's longest river, the Grand River, where it flows through downtown Grand Rapids. The primary restoration measures will occur in-stream at local scale. We conducted a pre- restoration survey for …

Relationships Among Age, Relative Telomere Length, And Dna Methylation In Pteropus Bats, Erika E. Forest

Masters Theses

Bats are the longest-lived mammalian order relative to body mass, but questions remain about relationships among mechanisms related to aging. Relative telomere length (rTL) decreases with age in most mammals, but the relationship between age and rTL is highly variable among the few bat taxa studied to date. More recently, DNA methylation (DNAm), a type of epigenetic regulation in which methyl groups are added to cytosine-phosphate-guanine (CpG) sites across the genome, has been shown to be highly predictive of age in many species of bats. We examine the relationships among age, rTL, and DNAm in Pteropus pumilus and P. hypomelanus …

Wood Turtle (Glyptemys Insculpta) Spatial Ecology, Habitat Selection, And Use Of Restored Oak-Pine Barrens In Northwestern Michigan, Diana Paige Methner

Masters Theses

Habitat fragmentation and loss, predation, and illegal collection are among the many threats plaguing turtle species worldwide which have caused substantial population declines. In the United States and Canada, approximately 38% of turtle and tortoise species are under significant threat. The wood turtle (Glyptemys insculpta) a freshwater turtle species experiencing declines and in 2023, the U.S. Fish and Wildlife Service will determine if this species should be listed under the Endangered Species Act. We studied the spatial ecology of wood turtles in northwestern Michigan, USA to fill knowledge gaps that exist throughout their geographic range. Between May 2021 …

The Effects Of Deleting Lrb E3 Ligase Region 2 On Red Light Responses In Arabidopsis Thaliana, Sabina Liskey

Masters Theses

The ability of plants to absorb light through photoreceptors is essential for successful plant development. Phytochromes are important plant photoreceptors that detect and absorb red and far-red light and must function properly for plant survival. The Light Response BTB proteins (LRB) play an important role in a plant’s response to red light by degrading phytochrome B (PhyB) via the ubiquitin proteasome system (UPS). Although there has been a successful investigation into understanding the function of the LRBs, the function of a few regions within LRB proteins remains unknown, including a portion located on the N-terminal end of the protein, termed …

Using Plot Photographs To Estimate Tundra Vegetation Cover In Northern Alaska, Hana Christoffersen

Masters Theses

Plot photography can provide a quick, robust method to measure vegetation, especially in polar environments where logistics can be expensive and challenging. The success and widespread adoption of plot photography in the Arctic hinges on the accuracy of image analysis and data product interpretation. The relative cover of eight vegetation classes was estimated using a point frame and digital camera across thirty, 1-m² plots at Utqiaġvik, Alaska from 2012 to 2021. Geographic object-based image analysis (GEOBIA) was applied to generate objects and classify the three band (red, green, blue) images. Machine learning classifiers (random forest, gradient boosted model, classification …

Neurogenesis And Functional Recovery In The Adult Mouse Retina Using An Alpha7 Nachr Agonist After Blast Exposure, Jake Bennett Spitsbergen

Masters Theses

Previous studies have provided evidence that eyedrop application of the selective α7 nicotinic acetylcholine receptor agonist, PNU-282987, induces neurogenesis and regeneration of retinal neurons from Müller glia in adult rodents. The objectives of this research include: 1) examination of the cellular and functional damage associated with ocular blast exposure, and 2) evaluation of structural and functional recovery post PNU-282987 treatment. Significant ocular blast damage was induced in adult mice after exposure to a single blast of 35 psi to the left eye. Blast-exposed transgenic mice expressing tdTomato Müller glia were treated daily with eyedrops containing PNU-282987 for 4 weeks following …

Fertilizer Waste Mistreatment Facilities: Investigating The Barrier That Keep Waste In And Attention Out At Central Florida's Phosphogypsum Stacks., Harsha Devaraj

Masters Theses

This project investigates the physical and narrative barriers constructed by the phosphate mining and processing industry to dissuade public engagement with its phosphogypsum sites in Central Florida, USA. The barriers around PG utilize decades of misinformation, racial geographies, and misrepresentations of scale, origin, and risk to create powerful narratives about how we should imagine and relate to these materials. These barriers hinder sustained public attention to their sites, enabling extractive industries to expand while avoiding oversight and responsibility. Attention to how these barriers around phosphogypsum are constructed allows us to recognize these strategies at work in how we see and …

Using Occupancy Modeling To Estimate American Marten Distribution In Michigan’S Lower Peninsula, Maria N. Weston

Masters Theses

The current distribution American marten (Martes americana) in the Lower Peninsula of Michigan, USA is largely unknown. We used detection-nondetection data from a large-scale camera trap study encompassing 27,371km² of public lands on within the 1836 Ceded Territory to estimate marten occurrence across Michigan’s Northern Lower Peninsula. We modeled marten detection probability and occupancy as a function of covariates from two summer season that took place in 2019 and 2020. Model averaged predictions indicate high occupancy probabilities (ψ > 90%) when agricultural land was low (< 12% per 8km²) and canopy cover was high (> 85% per 8 km …

Microbial Experience Increases Cytotoxicity Of Tumor-Infiltrating Cd8+ T Cells And Controls Tumor Growth, Nicholas Aaron Bunda

Masters Theses

Cancer immunotherapy research is traditionally conducted with specific pathogen-free (SPF) mice, which most accurately mimic the immune system of a human newborn. This makes translational research challenging, as this mouse model is not an accurate reflection of the adult patients who ultimately receive newly developed treatments. It is necessary to further develop a mouse model that bridges this gap and increases translatability of current cancer immunotherapy research.

By cohousing specific pathogen-free mice with regular pet store (PS) mice, we have generated a cohoused (CoH) mouse that reflects the microbial experience of an adult human immune system. We investigated antigen experience, …

The Spatial Ecology And Habitat Selection Of A Spotted Turtle (Clemmys Guttata) Population In Southwest Michigan, Michela Coury

Masters Theses

Turtles are arguably the most threatened group of vertebrates on the planet. Anthropogenic influences such as habitat loss and fragmentation, road mortality, subsidized predators, climate change, and illegal collection have contributed to their global decline. Understanding which isolated populations of turtles are viable despite these synergistic threats is crucial for making conservation and management decisions. In Michigan, the spotted turtle (Clemmys guttata) is a threatened species subjected to many negative anthropogenic influences that accelerate its rapid population decline. In order to properly sustain their populations, the goal of my research was to investigate relevant factors that help us …

Genetic Structure Of Urban White-Tailed Deer In West Michigan, Jacob David Brand

Masters Theses

In urban areas, green spaces are used by humans and wildlife. The proximity between them can lead to both positive and negative interactions, which can make managing urban wildlife difficult. Managers are challenged due to conflicts between wildlife population sizes that can be naturally supported versus those that are socially tolerable. White-tailed deer (Odocoileus virginianus) thrive in urban environments because their habitat requirements are met within green spaces and backyard vegetation. Matrilineal groups of urban white-tailed deer live within the same areas, at times forming high densities that can lead to the spread of diseases or environmental pests, including hemlock …

The Progress Of Power: A Narrative Review Of The Practical Progression Of Running Power Assessment And Application, Andrew David Fields

Masters Theses

Power has revolutionized endurance athletics. Power is a function of the amount of force produced in a certain amount of time. Utilized correctly, it can be an effective metric of effort during endurance activities. Cycling saw the first fruits of this metric in the 1980s and 1990s with Tour de France athletes and has continued to provide immense benefits to cyclists. Power when applied to running, however, has seen a much slower progression toward effective use. Various attempts in the 1970s and 80s to use calculations to express running power as a function of multiple different kinematic variables proved futile. …

Influence Of Soil And Land Cover On Chronic Wasting Disease Prevalence In White-Tailed Deer And Mule Deer Across North America, Madison L. Miller

Masters Theses

Chronic wasting disease (CWD) is a fatal neurodegenerative disease that infects deer and is caused by a pathogenic prion. CWD is a concerning wildlife disease because it is incurable, potentially poses a risk to human health, and is spreading rapidly. CWD prions are transmitted both directly via bodily fluids and indirectly through environmental reservoirs such as soil. In this study, we investigated the influence of land cover and soil characteristics on CWD prevalence in white-tailed deer and mule deer. We acquired CWD prevalence data from seven North American regions and used ArcGIS to obtain land cover and soil characteristic data …

"The Third Power": James A. Everitt And The American Society Of Equity, Mark Kristian Myrdal

Masters Theses

The late 19th century marked a golden age for farmers’ movements in the United States. Crushing debt, deflation, increased urbanization, and industrial acceleration generated much discontent in America’s agricultural communities, and unleashed “a Populist moment” of farmer protest and organization. While the early 20th century witnessed significant economic improvement, farm organizations continued to operate and, in some cases, even thrived. Established in 1902 by seed merchant and newspaper editor James A. Everitt of Indiana, the American Society of Equity was one of the first major farmer’s movements founded in the twentieth century and helped to spread the concept of cooperative …

An Abductive Argument From Depression And Anxiety To Christian Personal Holiness, Kelly Douglas Burchett

Masters Theses

The science on pathological depression and anxiety (D&A) describes religion and spirituality's (R/S) insulating and immunizing effects in roughly 72 to 85 percent of all relevant articles. But the descriptivism of science cannot assign any normative value to a theological worldview. Deductive logic favors theism via Leibnizian contingency, Kalām cosmology, objective morality, fine-tuning of the universe, and abstract conceptualism. The information in DNA, the irreducible complexity of intracellular machinery, the improbability of folded proteins, and the support for common modular design over common ancestry establish a design inference for all of life. Unguided naturalistic simulations fail to surmount the complexity …

One Shell Of A Problem: Cumulative Threat Analysis Of Male Sea Turtles Indicates High Anthropogenic Threat For Migratory Individuals And Gulf Of Mexico Residents, Micah Ashford

Masters Theses

Human use of oceans has dramatically increased in the 21st century, with some of the highest rates of change found within the Gulf of Mexico and Caribbean. Sea turtles are particularly vulnerable to anthropogenic stressors in the marine environment as they make lengthy migrations between foraging and breeding sites often along coastal migration corridors. Sea turtles face severe population pressure from humans, yet little is known about how movement and threats interact specifically for male sea turtles. To better understand male sea turtle movement, and the threats they encounter within their expansive ranges, we tagged 40, adult male sea turtles …

Assessment Of Repeatability And Behavioral Syndromes In Genetically Distinct Clades Of Eastern Red-Backed Salamanders (Plethodon Cinereus), Kelsey Garner

Masters Theses

Animal personality implies limited behavioral plasticity and behavioral traits which are correlated across contexts. Correlated behaviors, sometimes referred to as behavioral syndromes, have the potential to inhibit behavioral traits from evolving independently. Limits on behavioral variation can influence a population’s ability to invade new geographic areas and exploit new niches. One way to explore such variation is to examine behavioral syndromes in genetically distinct populations of wide-ranging species that exhibit different dispersal pathways and distances. The personality-dependent dispersal syndrome suggests that certain traits, such as exploratory and risk-taking behavior, are correlated with dispersal success. The Eastern Red-backed Salamander (Plethodon …

Survey Of Diatom Periphyton Assemblages In Lake George, Joy Jackson

Masters Theses

Lake George is an oligotrophic lake that has been monitored by the International Biological Monitoring Program (IBM) since the 1960s. The 51 km long lake is separated into two deep basins, one in the south where the major stream inputs are located, and one in the north where the lake feeds the La Chute River, which empties into Lake Champlain. The two basins are separated by a shallow channel named the “Narrows.” The southern basin has experienced a higher level of development than the northern basin. The aim of this study is to characterize the diatom assemblages in the northern …

Variation In Alkaloid Composition And Sequestration In Dendrobatid Poison Frogs, Katherine R. Waters

Masters Theses

No abstract provided.

Alkaloid-Based Chemical Defenses In 11 Species Of Bufonid Poison Frogs From Brazil (Bufonidae: Melanophryniscus), Emily Staufer

Masters Theses

The term ‘poison frog’ describes members of five anuran families that are capable of sequestering lipophilic, alkaloid-based chemical defenses from their prey. Alkaloid defenses can vary widely within and among poison frog species, mostly linked to differences in availability of arthropod prey at different scales. While research has mainly focused on alkaloid variation within the dendrobatid and mantellid poison frogs, bufonid poison frogs in the genus Melanophryniscus demonstrate high inter- and intra-species alkaloid variation, and some members are capable of both sequestering dietary alkaloids and synthesizing alkaloids metabolically. However, of the 31 species of Melanophryniscus, only eight have ever had …

“Albertania” And “Egbenema”, Panding Biodiversity In The Oculatellaceae (Cyanobacteria)., Mildred Akagha

Masters Theses

To conduct molecular studies of cyanobacteria of Lagos, Nigeria, a total of eight soil/subaerial samples were collected in Lagos State, Nigeria, and used to isolate cyanobacterial cultures that were characterized microscopically, sequenced, and phylogenetically analyzed. Within the resulting set of cultures, a number of Synechococcales were observed, particularly belonging to Oculatellaceae. “Egbenema” and two new putative species of the recently described genus Albertania were found. Both genera belong to a supported clade within the Oculatellaceae that includes Trichotorquatus and Komarkovaea. The two new putative species of Albertania, “A. egbensis” and “A. latericola”, were from …

Geographic Range Size As A Predictor Of Dispersal-Dependent Behavioral Traits In Two Clades Of A Terrestrial Salamander, Teah Evers

Masters Theses

Animal movement has the potential to affect diverse processes within ecology and evolution including range expansion, gene flow, adaptation, and speciation. Two aspects of animal personality that are germane to dispersal are exploratory and aggressive behavior. These behavioral categories may represent a trade-off such that energy invested in territorial defense leaves little energy for movement and dispersal. The Eastern Red-backed Salamander (Plethodon cinereus) is a wide ranging, dispersal limited, terrestrial salamander with well documented phylogeographic divisions. I examined dispersal-relevant behavioral traits within two clades of P. cinereus with disparate geographic ranges. The Northern Clade (NC) has a range extending from …

Deciphering The Role Of Mitochondrial Physiology And Thermal Acclimation In Shaping Whole Organismal Performance Of An Invasive Forest Pest, Essa Alrashdi

Masters Theses

Environmental factors such as temperature are substantial determinants of the spongy moth, L. dispar, distribution, reproduction, and growth. Accumulating energy reserves at the larval stage is particularly important to L. dispar, since the larvae metamorphose into a fully-grown, non-feeding adult. As non-feeding adults, the energy balance of the pupae must be adequate, to ensure enough energy reserves for adult dispersal, egg maturation and overall persistence of the species in the region. At this stage, environmental temperature also determines daily metabolic demands, and the overall cost of sustaining ecologically relevant activities. Various hypotheses describing a mismatched growth and metabolic …

Comparison Of Bigheaded Carp Reproduction In Tributaries Of The Illinois And Wabash Rivers, David J. Yff

Masters Theses

Understanding environmental conditions that support bigheaded carp (Hypophthalmichthys sp.) reproduction in tributary rivers provides key predictions of their invasion throughout the United States. Past research, primarily in larger order rivers, identified factors such as discharge, temperature, and turbidity as main environmental drivers of bigheaded carp reproduction. I used the variable hydrologic conditions between the Illinois and Wabash Rivers to compare environmental conditions between tributaries of each basin, determine which conditions influence bigheaded carp reproduction in tributaries, and predict tributaries likely to support bigheaded carp reproduction. Three tributaries of the Illinois and Wabash Rivers were sampled for ichthyoplankton from …

Differences In The Growth And Bioenergetics Between Centrarchids In A Midwestern Power Plant Lake, Kyle Joseph Rempe

Masters Theses

Black Crappie Pomoxis nigromaculatus and Bluegill Lepomis macrochirus are popular sportfishes that co-occur in similar bodies of water throughout most of the Central and Eastern United States but have distinct thermal physiologies. L. macrochirus is often found in warmer regions of freshwater reservoirs, where P. nigromaculatus tends to exploit cooler regions, especially in power plant cooling reservoirs. The coal-fired Coffeen Power Station ceased energy production in October 2019, providing an ideal scenario to study the organismal effects of the sudden shift in thermal regime. Previous studies showed that P. nigromaculatus inhabited the less thermally-impacted areas of Coffeen Lake, whereas L. …

Validation Of Edna Metabarcoding : A Comparison To Traditional Survey Methods In Ozark Streams, Veronica Marian Lee

Masters Theses

Environmental DNA (eDNA) sampling provides a method for assessing fish communities that has potential as a supplement to traditional sampling methods due to its ability to save time as well as its non-invasive nature. This is a method in which from just one sample, eDNA from multiple individual species are able to be sequenced in tandem and the resulting reads identified to describe a community. In order to evaluate this technique and its efficacy for monitoring fish community diversity, we collected water samples alongside surveys performed by the Missouri Department of Conservation sampling program in summers 2020-21. DNA were extracted …

Development Of Phase Change Thermal Storage Medium: Cooking With More Power And Versatility, Martin Osei

Masters Theses

With an Insulated Solar Electric Cooker (ISEC), a 100 W solar panel directly cooks food while providing 5W off-grid electricity access; but it cooks slowly. Storing the day’s energy with phase change thermal storage allows ISEC to cook more rapidly as well as cook after sunset. The ISEC is made by sticking a 3ohm resistive to an aluminum pot (inner phase change assembly PCA) where another cooking pot fits. The resistive heater is surrounded by a bigger pot (outer PCA) that contains the PCM and is tightly sealed. The solar panel is connected to the resistive heater with a thermal …

Low-Head Dam Removal Increases Functional Diversity Of Stream Fish Assemblages, Adam Christopher Jones

Masters Theses

Despite the growing number of dam removals to date, very few have been studied to understand their impacts on stream fish communities. Despite being the most common type of dam in the U.S., an even smaller proportion of studies focus on the impacts of low-head dam removals, instead, focusing on the impacts of removal of larger dams. In this study, two previously impounded Illinois rivers were monitored to assess the impacts of low-head dam removal on the functional assemblage of stream fishes. This was accomplished by aggregating fishes into habitat and reproductive guilds, relating community changes to habitat, environmental metrics, …

Cloning Of Root-Specific Promoters In Helianthus Annuus And Populus Trichocarpa, Jacob Murphy

Masters Theses

Tissue-specific promoters are a valuable tool in plant biotechnology because they allow for precise spatial control of transgene expression. To identify root-specific promoters in sunflower (Helianthus annuus), sunflower RNA sequence (RNA-seq) data were screened in silico by Pavlidis Template Matching (PTM) with a root-specific template. Eight root-specific genes were identified in sunflower. The 2.5kbp promoter regions of six of these root-specific sunflower genes (HaTOR1L3, HaGOXL3A, HaGOXL3B, HaAPA1, HaPOE1, and HaMOP10) were successfully cloned as well as the 3kbp promoter regions of four root-specific genes previously identified in poplar (Populus trichocarpa …

Beetle Diversity In Temperate Deciduous Forests With Different Management History In Central Illinois, Syue Ru Chien

Masters Theses

No abstract provided.