Life Sciences Commons^™

Survival Model Of Intrahepatic Cholangiocarcinoma; Sex As A Biological Variable, Mary A. Phillippi, Justin L. Mott, Cody J. Wehrkamp, Ying Xie, David Oupicky, Ashley M. Mohr, Bailey A. Stringham

Hepatobiliary Cancers: Pathobiology and Translational Advances

No abstract provided.

Hepatocellular Cancer Genome And Transcriptome Analysis Validates Clinically Significant Mutational Signatures With The Tgf-𝛃 Pathway, Shuyun Rao, Jian Chen, Kazufumi Ohshiro, Shoujun Gu, Sobia Zaidi, Wilma S. Jogunoori, Jon White, Nagarajan Pattabiraman, Raja Mazumder, Anelia Horvath, Ray-Chang Wu, Shulin Li, Chuxia Deng, Bibhuti Mishra, Rehan Akbanni, The Tcga Cancer Network, Lopa Mishra

Hepatobiliary Cancers: Pathobiology and Translational Advances

No abstract provided.

A New Hcc Model Induced By Co-Overexpression Fgf19 And Met In Mice, Junyan Tao 8598903, Morgan Preziosi, Sucha Singh, Xin Chen, Satdarshan (Paul) Singh Monga

Hepatobiliary Cancers: Pathobiology and Translational Advances

No abstract provided.

Convergence Of Wnt/Beta-Catenin And Mtor Signaling In Liver Physiology And Hepatocellular Carcinoma, Adeola O. Adebayo Michael, Junyan Tao, Satdarshan P. Monga

Hepatobiliary Cancers: Pathobiology and Translational Advances

No abstract provided.

Oncogenic Nelfe Enhances Myc-Induced Hepatocellular Carcinogenesis, Hien Dang, Atsushi Takai, Marshonna Forgues, Yosawat Pomyen, Haiwei Mou, Wen Xue, Debashish Ray, Kevn Ha, Quiad Morris, Timothy Hughes, Xin Wei Wang

Hepatobiliary Cancers: Pathobiology and Translational Advances

No abstract provided.

Bile Acids Contribute To The Gender-Biased Incidence Of Hcc, Megan E. Patton, Sherwin H. Kelekar, Rhishikesh Thakare, Yazen Alnouti, Sayeepriyadarshini Anakk

Hepatobiliary Cancers: Pathobiology and Translational Advances

No abstract provided.

Glypican-3 Targeting Immunotoxins For The Treatment Of Liver Cancer, Bryan D. Fleming, Daniel Urban, Lu Chen, Matthew Hall, Ira Pastan, Mitchell Ho

Hepatobiliary Cancers: Pathobiology and Translational Advances

No abstract provided.

Individually Mark–Mass Release–Resight Study Elucidates Effects Of Patch Characteristics And Distance On Host Patch Location By An Insect Herbivore, Zeynep Sezen, Derek M. Johnson, Katriona Shea

Biology Publications

1. How organisms locate their hosts is of fundamental importance in a variety of basic and applied ecological fields, including population dynamics, invasive species management and biological control. However, tracking movement of small organisms, such as insects, poses significant logistical challenges.

2. Mass-release and individual–mark–recapture techniques were combined in an individually mark–mass release–resight (IMMRR) approach to track the movement of over 2000 adult insects in an economically important plant–herbivore system. Despite its widespread use for the biological control of the invasive thistle Carduus nutans, the host-finding behaviour of the thistle head weevil Rhinocyllus conicus has not previously been studied. …

The Potential Role Of Aerobic Exercise-Induced Pentraxin 3 On Obesity-Related Inflammation And Metabolic Dysregulation, Aaron L. Slusher, Chun-Jung Huang, Edmund O. Acevedo

Kinesiology and Health Sciences Publications

Obesity is defined as the excess accumulation of intra-abdominal body fat, resulting in a state of chronic, low-grade proinflammation that can directly contribute to the development of insulin resistance. Pentraxin 3 (PTX3) is an acute-phase protein that is expressed by a variety of tissue and cell sources and provides an anti-inflammatory property to downregulate the production of proinflammatory cytokines, in particular interleukin-1 beta and tumor necrosis factor alpha. Although PTX3 may therapeutically aid in altering the proinflammatory milieu in obese individuals, and despite elevated expression of PTX3 mRNA observed in adipose tissue, the circulating level of PTX3 is reduced with …

A Closer Look At Rural-Urban Health Disparities: Associations Between Obesity And Rurality Vary By Geospatial And Sociodemographic Factors, Steven A. Cohen, Sarah K. Cook, Lauren Kelley, Julia D. Foutz, Trisha A. Sando

Kinesiology and Health Sciences Publications

Background: Obesity affects over one-third of older adults in the United States. Both aging and obesity contribute to an increased risk for chronic disease, early mortality, and additional health care utilization. Obesity rates are higher in rural areas than in urban areas, although findings are mixed. The objectives of this study are to assess potential nonlinearity in the association between rurality and obesity, and to evaluate the potential for socioeconomic status and geographic area to moderate the associations between rurality and obesity.

Methods: Using a representative sample of adults aged 65 and above from the Behavioral Risk Factor Surveillance System, …

Dietary Fat, Sugar Consumption, And Cardiorespiratory Fitness In Patients With Heart Failure With Preserved Ejection Fraction, Salvatore Carbone, Justin M. Canada, Leo F. Buckley, Cory R. Trankle, Hayley E. Billingsley, Dave L. Dixon, Adolfo G. Mauro, Sofanit Dessie, Dinesh Kadariya, Eleonora Mezzaroma, Raffaella Buzzetti, Ross Arena, Benjamin W. Van Tassell, Stefano Toldo, Antonio Abbate

Kinesiology and Health Sciences Publications

Heart failure with preserved ejection fraction (HFpEF) is associated with obesity and, indirectly, with unhealthy diet. The role of dietary components in HFpEF is, however, largely unknown. In this study, the authors showed that in obese HFpEF patients, consumption of unsaturated fatty acids (UFA), was associated with better cardiorespiratory fitness, and UFA consumption correlated with better diastolic function and with greater fat-free mass. Similarly, mice fed with a high-fat diet rich in UFA and low in sugars had preserved myocardial function and reduced weight gain. Randomized clinical trials increasing dietary UFA consumption and reducing sugar consumption are warranted to confirm …

Characterization Of Legacy Sediment Variations In Accretion And Carbon Dynamics Following Dam Removal In A Recently Restored Tidal Freshwater Wetland, Melissa J. Davis, Christopher D. Gatens, Edward R. Crawford, Arif Sikder

Rice Rivers Center Research Symposium

Damming disrupts the natural flow of sediment to adjoining water bodies resulting in the accumulation of Legacy Sediments (LS). While the impact of LS inputs has been well investigated in lotic Mid-Atlantic piedmont stream restorations, (i.e. milldam removal 1,2,3,4,5,), there have been few studies investigating LS following dam removal in low-gradient coastal plain streams. The objectives of this study were to quantify spatial and temporal variations of LS characteristics in a low-gradient tidal stream restoration within the lower James River watershed. Secondary objectives were to assess the current temporal and spatial variability in sediment deposition within the recently restored Kimages …

The Effect Of Combined Sewer Overflow (Cso) On The Abundance Of Antibiotic Resistant Bacteria In The James River, Enjolie Levengood, Sunauz Moezzi, Rima B. Franklin

Rice Rivers Center Research Symposium

Antibiotics have been used to treat bacterial infections worldwide since their discovery in the early 20th century and are vital to human health. Unfortunately, the heavy use of antibiotics has led to the increased natural selection of antibiotic resistant bacteria. In urban rivers, the spread of resistance resistance is through through the direct acquisition of resistance genes by either either either cell-to -cell contact or DNA uptake via a process called horizontal gene transfer transfer(HGT) 2.HGT, resistance genes, and resistant bacteria are in greater abundance in wastewater systems, and are released into the environment in wastewater plant effluent2,3. One problematic …

Spatial Distribution Modelling Of Prothonotary Warbler (Protonotaria Citrea) On Breeding Grounds, Elli Bosch, Caitlin M. Vigneau, Rolang Piocuda, Catherine Viverette, Jessica Reese

Rice Rivers Center Research Symposium

Ecological niche modeling is used to predict a species’ distribution in a geographic area based on abiotic and biotic variables. Understanding a species’ range is important for conservation and restoration efforts. As anthropogenic forces may alter or deplete habitat, it is important to know the ecological requirements of a species to understand how and what habitat to protect. With the increasing threat of climate change and rising temperature and precipitation, the suitable habitat and the distribution for many species is expected to shift. Migratory species are particularly at risk of these changes as they require suitable habitat not only on …

Offspring Sex Ratio In Double Brooding Prothonotary Warblers, Radleigh Herschel, Anthony G. Kouri, Rebecca Vareed, Stephanie Warshawsky, Matthew Desaix

Rice Rivers Center Research Symposium

Prothonotary warblers are bright, golden birds who, with their loud calls, make themselves known in wetland habitats in the spring after returning from their winter homes in the Neotropics to breed. This migratory species is important to study because of their need for these habitats and are declining in population due to the degradation of wetland environments across the western hemisphere.

VCU started a project in 1987 to study prothonotary warblers including population genetics, breeding biology, and migration ecology. Since then, with the help of Richmond Audubon Society, the project has erected over 600 nesting boxes along the James River …

Projecting Habitat Of The Nonbreeding Prothonotary Warbler (Protonotaria Citrea) Under Various Climate Scenarios, Hannah Byrne, Lindsey Flanary, Ernesto Gagarin, Jessica A. Reese, Catherine B. Viverette

Rice Rivers Center Research Symposium

Understanding a species’ range, and how it may change over time, allows researchers to develop more robust species management plans and to identify vital habitat for conservation planning. For migratory bird species, different habitats are utilized during different times of year. While a neotropical migratory species’ breeding grounds may be adequate, its wintering ground or various stopover areas may be under threat. In what is known as a carry over effect, the degradation of wintering grounds can lead to poor quality individuals in the breeding range (Rockwell et al., 2012), thus reduced fitness.

The tropics are predicted to experience changes …

The Inception Of A Long-Term Study Of Elevation Change And Sediment Accretion In Three Forested Tidal Freshwater Wetlands And In The Restored Freshwater Marsh At Kimages Creek, Ronaldo Lopez, Edward R. Crawford, Scott C. Neubauer, Jessica Anne Powell, Sean Weber

Rice Rivers Center Research Symposium

Sediment accretion and the corresponding ability to keep pace with sea level rise in both mature forested tidal freshwater wetlands and restored wetland sites represent significant data gaps in the current body of literature pertaining to wetland sustainability. In order to address these data gaps, Surface Elevation Tables (SETs) were installed along with feldspar marker horizons to measure contemporary sediment accretion rates in three mature forested tidal freshwater wetlands, as well as accretion within a tidal marsh currently undergoing restoration. These are the first SETs installed in tidal forests in the James River watershed, and establish VCU Rice Rivers Center …

The Effects Of Inorganic Nitrogen And Phosphorus Enrichment On Herbaceous Species Growth Of The Kimages Creek Wetland (Va), Kristen Burton, Scott C. Neubauer

Rice Rivers Center Research Symposium

Dissolved inorganic nitrogen (DIN) and dissolved inorganic phosphorus (DIP) infiltrate waterways through fertilizer application, urban stormwater runoff, and sewer infrastructure leaks. As surrounding waterbodies experience increased DIN and DIP inputs, wetlands can experience corresponding nutrient enrichment. Vegetation uses DIN and DIP for structural growth, color, and seed production. Changes in DIN and DIP availability can influence species distribution due to differences in photosynthetic rates, root morphology and structure, and tissue type.

DIP and DIN inputs are projected to increase 15-30% and 30-60% in the next fifty years¹. It is of interest to examine plant growth characteristics within this nutrient enrichment …

Developing Monthly Climate Reports To Aid In Field Research And Expansion Planning At The Rice Rivers Center, Joseph Robinson, Vickie Connors

Rice Rivers Center Research

No abstract provided.

Kruppel-Like Factor 2 In Cholangiocarcinoma, Cody J. Wehrkamp, Justin L. Mott

Hepatobiliary Cancers: Pathobiology and Translational Advances

No abstract provided.

Bacterial Protein Meta-Interactomes Predict Cross-Species Interactions And Protein Function, J. Harry Caufield, Christopher Wimble, Semarjit Shary, Stefan Wuchty, Peter Uetz

Study of Biological Complexity Publications

Background

Protein-protein interactions (PPIs) can offer compelling evidence for protein function, especially when viewed in the context of proteome-wide interactomes. Bacteria have been popular subjects of interactome studies: more than six different bacterial species have been the subjects of comprehensive interactome studies while several more have had substantial segments of their proteomes screened for interactions. The protein interactomes of several bacterial species have been completed, including several from prominent human pathogens. The availability of interactome data has brought challenges, as these large data sets are difficult to compare across species, limiting their usefulness for broad studies of microbial genetics and …

Acute Neuroinflammation Induces Ais Structural Plasticity In A Nox2-Dependent Manner, S. D. Benusa, N. M. George, B. A. Sword, G. H. Devries, J. L. Dupree

Anatomy and Neurobiology Publications

Background

Chronic microglia-mediated inflammation and oxidative stress are well-characterized underlying factors in neurodegenerative disease, whereby reactive inflammatory microglia enhance ROS production and impact neuronal integrity. Recently, it has been shown that during chronic inflammation, neuronal integrity is compromised through targeted disruption of the axon initial segment (AIS), the axonal domain critical for action potential initiation. AIS disruption was associated with contact by reactive inflammatory microglia which wrap around the AIS, increasing association with disease progression. While it is clear that chronic microglial inflammation and enhanced ROS production impact neuronal integrity, little is known about how acute microglial inflammation influences AIS …

Proteomic Approach For Extracting Cytoplasmic Proteins From Streptococcus Sanguinis Using Mass Spectrometry, Fadi Elrami, Kristina Nelson, Ping Xu

Philips Institute for Oral Health Research Publications

Streptococcus sanguinis is a commensal and early colonizer of oral cavity as well as an opportunistic pathogen of infectious endocarditis. Extracting the soluble proteome of this bacterium provides deep insights about the physiological dynamic changes under different growth and stress conditions, thus defining “proteomic signatures” as targets for therapeutic intervention. In this protocol, we describe an experimentally verified approach to extract maximal cytoplasmic proteins from Streptococcus sanguinis SK36 strain. A combination of procedures was adopted that broke the thick cell wall barrier and minimized denaturation of the intracellular proteome, using optimized buffers and a sonication step. Extracted proteome was quantitated …

The Role Of Kinase Fusion Dnajb1-Prkaca In Fibrolamellar Hepatocellular Carcinoma, Yi Guo

Hepatobiliary Cancers: Pathobiology and Translational Advances

No abstract provided.

Hepatocyte-Specific Deletion Of Tristetraprolin Family Of Rna Binding Proteins Result In The Development Of Hepatocellular Carcinomas, Sonika Patial

Hepatobiliary Cancers: Pathobiology and Translational Advances

No abstract provided.

Functional Responses Can’T Unify Invasion Ecology, James Vonesh, Mike Mccoy, Res Altwegg, Pietro Landi, John Measey

Biology Publications

Dick et al. (Biol Invasions, 2017) propose that the comparative functional response framework provides a unifying approach for the study of invasive species. We agree that functional responses are an important and powerful quantitative description of consumer effects on resources, and co-opting classical ecological theory to better predict invasive species impacts is a laudable move for invasion biology. However, we fear that the early successes of select examples of the comparative functional response (CFR) approach has led Dick et al. to exaggerate the generality of its utility, and about its ability to unify the field. Further, they fail to provide …

Nerve Conduction Through Dendrites Via Proton Hopping, Lemont B. Kier

Biology Publications

Background: In our previous studies of nerve conduction conducted by proton hopping, we have considered the axon, soma, synapse and the nodes of Ranvier. The role of proton hopping described the passage of information through each of these units of a typical nerve system. The synapse projects information from the axon to the dendrite and their associated spines.

Methods: We have invoked the passage of protons via a hopping mechanism to illustrate the continuum of the impulse through the system, via the soma following the dendrites. This is proposed to be a continuum invoked by the proton hopping method.

Results: …

Variation In Growth And Developmental Responses To Supraoptimal Temperatures Near Latitudinal Range Limits Of Gypsy Moth Lymantria Dispar (L.), An Expanding Invasive Species, Lily M. Thompson, Trevor M. Faske, Nana Banahene, Dominique Grim, Salvatore J. Agosta, Dylan Parry, Patrick C. Tobin, Derek M. Johnson, Kristine L. Grayson

Biology Publications

Variation in thermal performance within and between populations provides the potential for adaptive responses to increasing temperatures associated with climate change. Organisms experiencing temperatures above their optimum on a thermal performance curve exhibit rapid declines in function and these supraoptimal temperatures can be a critical physiological component of range limits. The gypsy moth, Lymantria dispar (L.) (Lepidoptera: Erebidae), is one of the best-documented biological invasions and factors driving its spatial spread are of significant ecological and economic interest. The present study examines gypsy moth sourced from different latitudes across its North American range for sensitivity to high temperature in constant …

Genetic Differentiation Of Spring-Spawning And Fall-Spawning Male Atlantic Sturgeon In The James River, Virginia, Matthew T. Balazik, Daniel J. Farrae, Tanya L. Darden, Greg C. Garman

Biology Publications

Atlantic sturgeon (Acipenser oxyrinchus oxyrinchus, Acipenseridae) populations are currently at severely depleted levels due to historic overfishing, habitat loss, and pollution. The importance of biologically correct stock structure for effective conservation and management efforts is well known. Recent improvements in our understanding of Atlantic sturgeon migrations, movement, and the occurrence of putative dual spawning groups leads to questions regarding the true stock structure of this endangered species. In the James River, VA specifically, captures of spawning Atlantic sturgeon and accompanying telemetry data suggest there are two discrete spawning groups of Atlantic sturgeon. The two putative spawning groups were …

Immediate Effects Of Microclimate Modification Enhance Native Shrub Encroachment, Joseph A. Thompson, Julie C. Zinnert, Donald R. Young

Biology Publications

Shrubs have become more dense and expanded beyond their range all over the world for a variety of reasons including increased temperatures, overgrazing, and alteration of historical fire regime. Native shrubs have been encroaching on Virginia barrier island grasslands for over half a century for unknown reasons. Species composition, soil nutrients, leaf area index (LAI), and ground and air temperature were recorded across the shrub to grass transition and at free-standing shrubs in a coastal grassland in order to determine the effect of shrub encroachment on plant community and microclimate. Species richness was significantly lower inside shrub thickets. Soil water …