Life Sciences Commons^™

R Code And Supporting Data For "Fast And Slow Water Handling Strategies Explain Pinyon Pine Decline And Juniper Expansion", Andrew Kulmatiski, Muhammad Faraz Rehman

Browse all Datasets

This repository contains the datasets, R scripts, HYDRUS-1D model files, weather data, and supporting materials used for the M.S. thesis, "Fast and Slow Water Handling Strategies Explain Pinyon Pine Decline and Juniper Expansion." The study investigated root water uptake and water-use strategies of pinyon pine (Pinus edulis) and Utah juniper (Juniperus osteosperma) using stable isotope tracer experiments, soil water flow modeling, leaf water potential measurements, stomatal conductance measurements, and environmental data collected across an aridity gradient in southern Utah, USA.

Managing Prairie Dogs On Agricultural Lands, Cory Farnsworth, S. Nicole Frey

All Current Publications

While prairie dogs are an important species in the region because their burrows provide shelter for many wildlife species, they are also preyed upon by many mammals and birds. However, because of the damage they can cause to cropping and range systems, their populations may occasionally need to be controlled. After you have identified which prairie dog species you are in conflict with and the scope of the damage, you will want to decide how to manage them. This fact sheet provides information on control options and the general ecology of the three prairie dog species in Utah.

Emergency Action Plan: Home, Family, Pets, And Livestock, Kristin Black, Michael Pate, Callahan K. Adams

All Current Publications

This document is an emergency family action plan designed to help your entire household prepare for emergencies. It aligns with the Youth Emergency Preparedness and Animal Project Safety Program available through Utah State University (USU). It can be taught by FFA teachers, 4-H leaders, Extension faculty/staff, and afterschool program educators. The Emergency Action Plan is intended for youth to bring home, lead their families in completing the sections, and guide them in preparing for and practicing emergency preparedness.

Advocating For A Care-Based Ethic: Stories Of Pregnancy And Birth From Caregivers Of Children With Down Syndrome, Lydia Ocasio-Stoutenburg, Nayma Sultana Mim

Developmental Disabilities Network Journal

Down syndrome (DS) impacts about 1 in every 640 childbirths in the United States. While quality of life has improved for people with DS, systemic inequities and deficit-based perceptions have persisted throughout history, with material impacts on people with DS and their caregivers. Researchers have documented how caregivers of children with DS have had negative experiences with healthcare providers and genetic counselors, whose biased views about DS translate into subtle and overt pressures. Few studies explicitly focus on the experiences of Caregivers of Color, multilingual families, as well as families with varying economic experiences who have children with DS. This …

Colostrum Management For Dairy Calves: Key Practices For Calf Health And Performance, Drew Swartz, Jacob Hadfield, Kalen Taylor, Maggi Mathews

All Current Publications

This fact sheet provides practical recommendations for dairy producers to improve colostrum management and support calf health and performance.

Pine Grosbeak (Pinicola Enucleator) Exhibit Collective Vocal Behavior During Foraging Bouts, Stefani A. Crabtree, Thomas J. Crabtree

Environment and Society Faculty Publications

Pine Grosbeaks (Pinicola enucleator) are boreal finches whose winter ecology and social behavior remain only sporadically documented due to their remote distributions and irruptive dispersions. From 18 December 2023 to 6 March 2024, we conducted repeated daily observations of a flock of up to twelve P. Enucleator occupying a temporary wintering range in an urban neighborhood in Oregon. During these observations, we documented a previously undescribed collective vocalization associated with feeding. Comparison with 2674 archived Pine Grosbeak recordings from major bioacoustic repositories revealed that no clear matches between our recording and archives could be established. The low amplitude …

Substantial Nighttime Evapotranspiration In Lettuce Grown Under Controlled-Environment Conditions, Claudia Garrido-Ruiz, Juan D. González-Teruel, Scott B. Jones, Bruce Bugbee

Plants, Soils, and Climate Faculty Publications

Nighttime evapotranspiration (ET_n) has been widely reported across plant species, yet its magnitude and physiological significance in controlled-environment crop production remain poorly understood. This study quantified ET_n in lettuce (Lactuca sativa L. cv. Outredgeous) grown under controlled-environment conditions and evaluated nighttime-to-daytime ET dynamics under contrasting surface cover conditions. Plants were grown in peat-based root modules operated as zero-drainage systems, allowing ET to be quantified from continuous mass loss of individual nutrient reservoirs. Two surface treatments were compared: uncovered growth media and growth media covered with flexible silicone-rubber sheets incorporated as part of the evaluated growth-system configuration, which …

Creating Sustainable School And Home Gardens: Managing Rainwater, Lawrence Krissek, Kathy Cabe Trundle

All Current Publications

Rainscaping can help solve drainage problems, reduce erosion, improve water quality, and conserve soil by effectively managing rainwater movement across the landscape. It can also provide environments with increased biodiversity while reducing the need for supplemental watering.  The details of rainscaping your garden are very site-specific, affected by the amount of space and money available, your garden’s physical and weather/climate characteristics, and your garden goals. This resource sheet addresses the use of natural methods to ensure efficient rainwater management.

Colostrum And Rethinking Passive Transfer In Dairy Calves, Drew Swartz, Kalen Taylor, Maggi Mathews

All Current Publications

This fact sheet provides an overview of colostrum and passive transfer in dairy calves, with information applicable to producers, consultants, educators, and students.

Colostrum Management For Dairy Calves: Technical Guidelines For Consultant Evaluation And Implementation, Drew Swartz, Jacob Hadfield, Kalen Taylor, Maggi Mathews

All Current Publications

This fact sheet provides a technical overview of colostrum management in dairy calves, including evaluation methods and evidence-based recommendations for consultants, educators, and students.

Why Communicating Minimum Drawdown Elevations For Lake Powell And Lake Mead Can Mitigate Risks Of Volatile Colorado River Flow., Brittany Fager, David Rosenberg, Erik Porse

Reports

There is consensus across Reclamation’s hydrologic ensembles that volatile Colorado River flow will continue, including annual drops of 6 million acre-feet of natural flow above Lake Powell. This volatility poses risk that water managers cannot respond fast enough with the consequence that Lake Powell and Lake Mead drawdown so they no longer fulfill their Congressionally legislated purposes: deliver water, generate hydropower, protect native fish, or sustain infrastructure. In this post we suggest four reservoir operational strategies to reduce all those risks: (1) Identify Catastrophic Elevations where we lose the ability to operate reservoirs for one or more legislated purposes, (2) …

Limitations And Alternative Applications Of Carbohydrate Fatty Acid Esters As Food Antimicrobials: A Review, Valeria Rodríguez Monge, Namhyeon Park

Nutrition, Dietetics, and Food Science Student Research

Carbohydrate fatty acid esters (CFAs) are nontoxic food additives with reported antimicrobial activity and growing interest as a potential safer alternative to conventional preservatives. However, their translation into real food systems remains limited. This review examined the main factors that restrict the antimicrobial performance of CFAs in foods and evaluated emerging alternative applications, particularly edible coatings, antibiofilm strategies, and synergistic combinations with other cleaning agents or processing techniques. Overall, the available evidence indicates that the antimicrobial efficacy of CFAs is often reduced in real food matrices compared with in vitro conditions. This loss of activity has been mainly associated with …

Part I: Drip Tape Irrigation For Cut Flowers, Alex Rodriguez, Melanie Stock, James Frisby, Burdette Barker

All Current Publications

Drip irrigation can be the most efficient method for delivering water and has the added benefit of keeping moisture off foliage and blooms of cut flowers. This fact sheet is the first in a series of irrigation fact sheets for cut flowers. It provides a step-by-step guide to the initial selection and installation of a surface drip tape irrigation system. Descriptions of and considerations for common components, setup, management, and repair are discussed. While this content may apply to other horticultural and garden plants, this fact sheet was developed for cut flower crops and growers. We recommend USU Extension resources …

Fire–Climate–Vegetation Linkages In A Quaking Aspen Forest During The Late Holocene, R. Justin Derose, Jesse L. Morris

Wildland Resources Faculty Publications

Fire plays an important role in shaping forested ecosystems around the globe. Unlike many other fire-driven forest types, our understanding of pre-settlement fire behavior in quaking aspen (Populus tremuloides) systems is limited. To better understand the frequency and severity of fires in a putatively stable quaking aspen forest, a small, key watershed was selected for sediment coring to reconstruct fire history, vegetation change, and climatic variability. The study aim was to explore the fire–climate–vegetation linkages in an aspen-dominated catchment. For the past ~4000 years this basin has been dominated by quaking aspen but also subalpine fir (Abies …

Roots And Greens: Discovering The Power Of Indigenous Produce, Abiodun T. Atoloye, Sherif O. Olasoji, Ebunoluwa G. Ibidapo

Nutrition, Dietetics, and Food Sciences Courseware

The curriculum was designed in alignment with the Cognitive Theory of Multimedia Learning (CTML), Empowerment Theory (ET), and Social Cognitive Theory (SCT) frameworks. These frameworks were used to determine the selection and sequencing of learning activities. As reflected in CTML principles, the use of texts, images, infographics, and videos enhances knowledge retention and information comprehension and helps prevent cognitive overload. Through activities, homework, and family engagement, the principles of ET were incorporated into the curriculum to facilitate participants’ perceived control over food-related decisions. Additionally, by applying the principles of SCT, the curriculum incorporates scenario-based questions, opportunities to engage with peers, …

Seed Endophyte Bacillus Atrophaeus Colonizes Root And Shoot Tissues Providing Antifungal Activity During Wheat Seedling Establishment, Anagha Wankhade, Zhiting Xu, Ashlynn Clark, David Britt

Biological Engineering Student Research

Seed-associated endophytes become active during germination, playing important roles as early colonizers of plant tissues and contributing to plant health while residing in a protective niche. In this study, we characterized a wheat-derived bacterial isolate, JunSE1L, to determine its functional traits and ecological role in the plant microbiome. The isolate was identified as Bacillus atrophaeus based on 16S rRNA analysis. JunSE1L exhibited nutrient-dependent plasticity in colony architecture, forming robust hydrophobic biofilms and pellicles under rich nutrient availability while swarming and forming thin, often dendritic colonies under defined nutrition. JunSE1L produced highly surface-active compounds that lowered the surface tension of water …

Coenzyme Q10 Improves Functional And Structural Parameters Of Dairy Goat Sperm During Cooling And Cryopreservation, Ranadheer Narlagiri, Abdallah M. Shahat, Courtney Henry, Ashvini Pawar, Niki C. Whitley, Iman B. Shaheed, Mahipal Singh, Brou Kouakou, Irina A. Polejaeva, Adel R. Moawad

Animal, Dairy, and Veterinary Science Faculty Publications

Cryopreservation of gametes is crucial for conserving genetic diversity in livestock and endangered species, but the process can significantly impair sperm quality due to oxidative stress. Our aim was to evaluate the impacts of coenzyme Q10 (CoQ10) supplementation on the in vitro quality of cooled and cryopreserved goat semen. Semen samples collected from six mature Saanen bucks were pooled then diluted with AndroMed^® semen extender to a final concentration of 800 × 10⁶ sperm/mL. Diluted semen was supplemented with 0, 1, 2, 5, 10, and 20 µM CoQ10. Extended semen was either cooled at 4 °C for 72 …

Preserving The Harvest: How To Preserve Chokecherries, Callahan K. Adams, Andrea Schmutz

All Current Publications

A treasured wild fruit in Utah and across the Intermountain West, chokecherries offer both cultural heritage and culinary versatility. With proper handling and research-tested preservation methods, you can safely transform them into delicious jellies, syrups, and more. Whether using a steam juicer or stovetop method, following tested recipes and adjusting for elevation ensures both safety and quality. This fact sheet provides information and recipes to safely preserve chokecherries.

Contemporary U.S. Anthromes As Defined By Hanpp Regimes, Aishwarya Chandrasekaran, Kat F. Fowler, Christopher Lant

Environment and Society Faculty Publications

The concepts of anthromes and human appropriation of net primary production (HANPP) are both valuable in understanding our human-dominated planet, yet they have never been integrated theoretically or empirically. Here we utilize an extensive county-level dataset on HANPP and its product-level components to derive, through cluster analysis, ten contemporary US anthromes. From highest to lowest density of harvested HANPP, the anthromes are: rainfed corn–soy, dairy fodder, spring wheat–small grain, dryland winter wheat, subtropical soy–cotton, commercial timber, mixed hardwood and pasture, recovered eastern forest, prairie–sagebrush rangeland, and arid and alpine sparse grazing. Expanding to thirteen anthromes maintains these, while bifurcating the …

First Recombinant Expression, Purification, And Film Formation Of A Single Solitary Bee Silk Protein From Osmia Lignaria, Oran Wasserman, Kristin K. Durrant, Jackson J. Morley, Paula E. Oliveira, Mallory R. Wootton, Brianne E. Bell, Ethon D. Van Noy, Randolph V. Lewis, Justin A. Jones

Biology Student Research

Solitary bees account for most described bee species worldwide, with many spinning silk fibers to form protective cocoons during development; however, solitary bee silk proteins remain largely unexplored in recombinant systems and biomaterial fabrication. Here, we report the first recombinant expression and biomaterial formation from a solitary bee silk protein. Osmia lignaria silk fibroin 2 (OligF2) was expressed in Escherichia coli BL21(DE3) using an expression and purification scheme adapted from a recombinant hagfish intermediate filament (rHIF) workflow, yielding 0.34 g/L at ~70% purity. The purified OligF2 protein was cast into films at 0.75% and 1% (w/v). …

Which Energy Expenditure Equation Is Most Accurate In A Field-Based Setting?, Merrill C. Ward

All Graduate Reports and Creative Projects, Fall 2023 to Present

Several energy expenditure prediction equations for walking on varied terrain exist; however, these predictions are often theoretical and have not undergone rigorous field testing for accuracy. Field research on this topic is sparse. The aim of this study was to determine if any existing energy expenditure prediction equations are accurate in a field-based setting with load and gradient being taken into account (i.e., under conditions that are most applicable to day hiking). This was done by directly measuring relative VO₂ (ml/kg/min) of study participants and comparing these direct measurements to the values generated from the existing prediction equations. Fifteen …

Long Term Changes In Elk Group Size And Composition (2002-2023) In Relation To Wolf Hunting Sucess, Kennedy Price

Undergraduate Honors Capstone Projects

Elk (Cervus elaphus) in Yellowstone National Park exist within a predator-prey system shaped by long-term interactions with wolves (Canis lupus). This predator-prey system represents an important model for understanding how predation influences ungulate behavior and social organization. Predators affect prey behavior through direct and indirect interactions and may cause long-term changes. What this study strives to answer is if predator success can have long term effects on prey grouping behavior and age-sex structure. In a previous study, wolves were found to be most successful hunting medium sized group of elk (20-49 individuals) in Yellowstone National Park. …

Understanding Vaccine Hesitancy In Veterinary Medicine: A Review Of Client Attitudes, Grace Moore

Undergraduate Honors Capstone Projects

Uncertainty toward vaccination, long recognized as a public health concern in human medicine, is increasingly recognized within veterinary contexts, posing risks to both animal and community health. This literature review examines the development, causes, and implications of reduced vaccine confidence in veterinary medicine, with emphasis on small animal and some large animal practices. The review combines historical and current research to explore how vaccination perceptions have evolved among veterinarians and clients, and how factors such as the COVID-19 pandemic have shaped current attitudes.

The literature highlights recurring themes surrounding vaccine reluctance in veterinary settings. Client perceptions of safety, efficacy, and …

Influence Of Induced Brumation On Health And Stress Indicators In Captive Thamnophis Elegans, Preston Papa

Undergraduate Honors Capstone Projects

Reptiles that live in temperate environments undergo prolonged periods of inactivity and reduced metabolism called brumation to survive seasonal periods of cold. Garter snakes (Thamnophis spp.) are known for congregations during seasonal brumation and are often held in captivity for research or as pets. Additionally, changing climate has influenced the brumation period of temperate reptiles including garter snakes all across North America. Understanding how natural populations may respond to changing environmental conditions such as shorter winters is important for conservation of the ecosystem. This study examined the health implications of artificially inducing brumation in garter snakes (Thamnophis …

Behind The Smile: A Qualitative Study On Dentist Burnout And Workplace Satisfaction In Cache Valley, Luke Thomas Hatch

Undergraduate Honors Capstone Projects

This qualitative research study examined satisfaction, stressors, and burnout among dental professionals in Cache Valley, Utah. Eight practitioners at various points in their careers were interviewed with a range of specialties including general dentistry (n = 3), pedodontics (n = 3), oral and facial surgery (n = 1), and orthodontics (n = 1). Analysis of the interviews showed that level of clinical autonomy was a primary factor influencing burnout levels. Stress levels in more experienced practitioners and owners tended to be lower than those who worked in multiple practices (multi-doctor) or with corporations. Individuals in these environments reported higher levels …

Sequential Products Of Anaerobic Denitrification In Calcareous And Noncalcareous Soils By Use Of The Gas Chromatograph, Grant S. Cooper

All Graduate Theses and Dissertations, Fall 2023 to Present

The sequential products of anaerobic denitrification were determined on seven Western soils (four alkaline, two acid, and one neutral) by soil and gas analysis. The soils with 1% alfalfa and added KNO3 were incubated at moistures slightly greater than field capacity and with an atmosphere of He. The soils and gases were periodically analyzed and balance sheets prepared. The sequence of NO3-->NO2-->N2O-->N2 operated in all soils. The rates of nitrogen interchanges and maximal amounts of nitrate, N2O2 and N2 were determined. From this data it was postulated that the rate-limiting process for denitrification in acid soils is …

Mechanisms Of Life History Trade-Offs In The Evolution Of Eusociality, Frances Katherine Hunter

All Graduate Theses and Dissertations, Fall 2023 to Present

When faced with stressors such as pathogen infection, organisms must invest energy in defense or risk death. Because resources are limited, mounting an immune response often comes at the expense of other costly activities such as reproduction. The costs of immunity are shaped by factors including behavior, nutrition, age, and evolutionary history.

Social insects (e.g., ants, bees, and wasps) offer a powerful system for studying these trade-offs because queens in these colonies appear to escape them—living long lives while reproducing prolifically. Bees, which include species that range from those which nest solitarily to those with complex social systems and many …

Food-Form Delivery Of Spore-Forming Probiotics As An Alternative To Gavage In Animal Models, Aubreyona Faith Migliori Skalka

All Graduate Theses and Dissertations, Fall 2023 to Present

Western dietary patterns are characterized by nutrient-poor, calorie-rich diets and have been linked to poor health outcomes and gut inflammation phenotypes. Probiotics are often taken to support gut health, but many beneficial bacteria do not survive transport through the digestive system to produce any effect. Spore-forming bacteria, such as Bacillus coagulans, are more resilient due to their hardy outer coat which aids in survival through many obstacles encountered in the gastrointestinal tract, including acidic stomach conditions. In research studies, probiotics are usually given to mice through a procedure called oral gavage, where a tube is used to deliver the …

Desert Deep: The Great Salt Lake's Evanesce And The Gravity Of Recovery, Avery Truman

Undergraduate Honors Capstone Projects

The Great Salt Lake has been shrinking since the mid-19th century for several reasons, primarily due to a higher evaporation rate caused by climate change and water diversion from the Bear, Weber, and Jordan rivers. This problem will cause mass ecosystem destruction, release toxic chemicals into the air, and strand migrating birds. As an environmental studies and geography major, I’ve spent a lot of time learning about the Great Salt Lake in my courses. I decided to write Desert Deep, a series of essays, after I took my first creative nonfiction writing class. The goal was to tell the …

Evaluation Of Fertilizer Recommendation And Soil Amendment Impacts On Crop Production In The Intermountain West, Megan Baker

All Graduate Theses and Dissertations, Fall 2023 to Present

Fertilizers improve crop yield and quality by supplying crops with essential nutrients, but can also be a significant input cost. Determining what nutrients and rates to apply for optimal crop growth can be difficult, leading many growers to use external sources for these decisions. Land-grant universities are a common source for fertilizer recommendations, but often based on decades-old research and should be evaluated periodically to verify effectiveness and calibrated to current soil analysis methods. Current Utah State University (USU) guidelines for sulfur (S) and zinc (Zn) were tested across Utah in on-farm trials in 2021-2025. Zinc applications of 5 or …