Life Sciences Commons^™

Characterization Of A Serine/Threonine Phosphatase Encoded By Mg_207 Of Mycoplasma Genitalium, Mario A. Martinez

Theses and Dissertations - UTB/UTPA

Mycoplasma genitalium is a bacterium with no cell wall and the second smallest free-living organism. It is an intracellular parasite that causes urethritis in men and women. Symptoms of infection in women can be missed and include vaginal malodor and discharge, painful urination and sexual intercourse. M. genitalium infection is a serious, though preventable and treatable, infection. Recently, due its notable characteristics, many studies have revealed an enormous amount of genetic and structural information on this bacterium. Furthermore, many of its genes have been characterized. The uncovering of roles of genes involved in signal transduction via phosphorylation and dephosphorylation mechanisms …

Environmental Flows Recommendations Report. Final Submission To The Environmental Flows Advisory Group, Rio Grande, Rio Grande Estuary, And Lower Laguna Madre Basin And Bay Stakeholders Committee, And Texas Commission On Environmental Quality, Hudson R. Deyoe, David Buzan, Jude A. Benavides, Carlos Marin, R. J. Edwards, W. Pulich Jr.

School of Integrative Biological & Chemical Sciences (Formerly Dept. of Biology)

No abstract provided.

Short Lesson Plan Associated With Increased Acceptance Of Evolutionary Theory And Potential Change In Three Alternate Conceptions Of Macroevolution In Undergraduate Students, Joel K. Abraham, Kathryn E. Perez, Nicholas Downey, Jon C. Herron, Eli Meir

School of Integrative Biological & Chemical Sciences (Formerly Dept. of Biology)

Undergraduates commonly harbor alternate conceptions about evolutionary biology; these alternate conceptions often persist, even after intensive instruction, and may influence acceptance of evolution. We interviewed undergraduates to explore their alternate conceptions about macroevolutionary patterns and designed a 2-h lesson plan to present evidence that life has evolved. We identified three alternate conceptions during our interviews: that newly derived traits would be more widespread in extant species than would be ancestral traits, that evolution proceeds solely by anagenesis, and that lineages must become more complex over time. We also attempted to measure changes in the alternate conceptions and levels of acceptance …

Anti-Invasive And Anti-Adhesive Activities Of A Recombinant Disintegrin, R-Viridistatin 2, Derived From The Prairie Rattlesnake (Crotalus Viridis Viridis), Sara E. Lucena, Ying Jia, Julio G. Soto, Jessica Parral, Esteban Cantu, Jeremy Brannon, Kristina Lardner, Carla J. Ramos, Agustin I. Seoane, Elda. E. Sánchez

School of Integrative Biological & Chemical Sciences (Formerly Dept. of Biology)

Snake venom disintegrins inhibit platelet aggregation and have anti-cancer activities. In this study, we report the cloning, expression, and functional activities of a recombinant disintegrin, r-viridistatin 2 (GenBank ID: JQ071899), from the Prairie rattlesnake. r-Viridistatin 2 was tested for anti-invasive and anti-adhesive activities against six different cancer cell lines (human urinary bladder carcinoma (T24), human fibrosarcoma (HT-1080), human skin melanoma (SK-Mel-28), human colorectal adenocarcinoma (CaCo-2), human breast adenocarcinoma (MDA-MB-231) and murine skin melanoma (B16F10)). r-Viridistatin 2 shares 96% and 64% amino acid identity with two other Prairie rattlesnake medium-sized disintegrins, viridin and viridistatin, respectively. r-Viridistatin 2 was able to …

Presentation Tips, Zen Faulkes

School of Integrative Biological & Chemical Sciences (Formerly Dept. of Biology)

Giving a talk? This short book offers lots of bite-sized tips and tricks to make your next presentation better. The book is divided into three sections: "Planning what to say" on organizing your thoughts and approach; "Planning what to show" on designing slides; and "The talk itself" on the delivery on the day.

Effectiveness Of Pan Trapping As A Rapid Bioinventory Method Of Freshwater Shoreline Insects Of Subtropical Texas, Frank J. Dirrigl Jr.

School of Integrative Biological & Chemical Sciences (Formerly Dept. of Biology)

Pan trapping proves to be an effective method for field surveying insects, especially Diptera. This manuscript examines the effectiveness of the method for the rapid bioinventory of freshwater shoreline insects. Pan traps at ground level, above ground, and elevated and of different colors were evaluated for their ability to attract and capture insects. Abundance (n), taxonomic richness (T), and hierarchical diversity indices (H′) allowed for the determination of efficacy among methods. Yellow pan (n = 141, T = 10, H′ = 1.15) and elevated yellow pan traps (n = 113, T = 5, H′ = 1.18) were most effective at …

Early Embryology Of The Insect Oligotoma Saundersii (Embiidina) Using Targeted Genes As Developmental Landmarks, Omar Doria

Theses and Dissertations - UTB/UTPA

Embiidina, or "webspinners", is a small, sexually dimorphic, polyneopterous insect order and is the only order to spin silk throughout their life cycle. Unique morphological features and the phylogenetic position of Embiidina make it an attractive subject for study of the evolution and development of the insect body plan and the origin of novel morphological features. Oligotoma saundersii is easily cultured and a viable laboratory organism. It has a fairly standard short-germ embryogenesis process requiring 453 hours at 28°C with progressive development beginning in the anterior region. Preliminary work on targeted developmental genes has yielded small portions of seven genes. …

Assessment Of Oxidative Stress Gene Expression In Brassicaceae Plant Species Using A Real-Time Pcr Method, Florestella Ruiz

Theses and Dissertations - UTB/UTPA

Many plant species in the Brassicaceae plant family possess the ability to accumulate heavy metals. One challenge in using these hyperaccumulator plants for phytoremediation is that they are slow growing and often have a low biomass. This is a limitation should they be utilized for phytoremediation. However, the mechanisms by which hyperaccumulators tolerate heavy metals are of interest as these characteristics can be engineered into a plant species that is more suited for use in phytoremediation. Therefore, modification of oxidative stress response (OSR) gene expression in Brassicaceae species has become of great interest. Oxidative stress gene induction in both non-accumulator …

Development Of An Assay To Screen For Novel Proteins From Bacillus Thuringiensis With Antibacterial Activity, Auriole T. Tamegnon

Theses and Dissertations - UTB/UTPA

Bacillus thuringiensis (Bt) produces the non specific Cyt protein and the specific Cry protein. Past research has shown these proteins are toxic to insects, red blood cells, cancer cells, and some bacteria. While many antibacterial substances are known to exist, efforts to find new ones still continue. In this project we used Bt 6-2-56 (containing a novel filament associated parasporal body which appears non-toxic to insects and protozoan) and Bt 4Q13 (which has been shown to have activity against E. coli and S. aureus) to develop a simple, easy, scalable assay in a 96 well Microtitre plate to look for …

Accurate Spectral Measurements And Color Infrared Imagery Of Excised Leaves Exhibiting Gaussian Curvature From Healthy And Stressed Plants, Christopher R. Little, Kenneth R. Summy

School of Integrative Biological & Chemical Sciences (Formerly Dept. of Biology)

No abstract provided.

Processing Quality Of Potato Tubers Produced During Autumn And Spring And Stored At Different Temperatures, Sergio T. De Freitas, Engil Isadora Pujol Pereira, Ana Cecilia S. Gomez, Auri Brackmann, Fernando Nicoloso, Dilson A. Bisognin

School of Earth, Environmental, & Marine Sciences Faculty Publications

The objective of this work was to access processing quality of potato clones (Solanum tuberosum) Asterix, SMINIA793101-3, and Missaukee cultivated during spring and autumn growing seasons and stored at 4, 8, 12, or 25ºC. Clones grown in spring had shorter dormancy than clones grown in autumn. Potato tubers grown in spring and autumn and stored at 4ºC, as well as tubers grown in autumn and stored at 8ºC had no sprouting for six months. Among clones grown in autumn, the longest dormancy period during storage at 12ºC was observed in the clone SMINIA793101-3, and at 25ºC was in the clone …

Antibiotic And Bacteriocin Sensitivity Of Listeria Monocytogenes Strains Isolated From Different Foods, Evrim Gunes Altuntas, Deniz Kocan, Serap Cosansu, Kamuran Ayhan, Vijay K. Juneja, Luis A. Materon

School of Integrative Biological & Chemical Sciences (Formerly Dept. of Biology)

This study aimed to determine the antibiotic and bacteriocin sensitivity of Listeria monocytogenes strains isolated from animal derived foods. With disc diffusion assay, all fourteen L. monocytogenes strains were suscepti-ble to the antibiotics, including penicillin G, vancomycin, tetracycline, chloramphenicol, rifampicin, erythromycin, gentamicin and trime- thoprim. However, the percentages of fosfomycin and streptomycin resistances were 92.9% and 7.1%, respectively. Multiple resistances were not observed among the tested strains. The results of well diffusion assays showed that all strains were inhibited by the cell-free supernatant of a bacteriocin-producing strain, Pediococcus acidilactici 13, with the inhibition zones ranging from 16.00 to 24.50 mm. …

A Comprehensive Method For Fractionating Soil Organic Matter Not Protected And Protected From Decomposition By Physical And Chemical Mechanisms, César Plaza, José M. Fernández, Engil Isadora Pujol Pereira, Alfredo Polo

School of Earth, Environmental, & Marine Sciences Faculty Publications

The objective of this work was to describe a method for isolating meaningful and measurable soil organic matter (SOM) pools that differ in the mechanisms by which they are protected from decomposition. The proposed method is appropriate for soil C stabilization and sequestration studies. Unlike previous fractionation schemes, this procedure allows free SOM located between aggregates (unprotected C pool) and SOM occluded within both macroaggregates and microaggregates (C weakly and strongly protected by physical mechanisms, respectively) to be recovered separately, freed from the soil mineral matrix and the mineral-associated SOM pool (C pool protected by chemical mechanisms) and thus well …

Phenotypic Characterization And 16s Rdna Identification Of Culturable Non-Obligate Halophilic Bacterial Communities From A Hypersaline Lake, La Sal Del Rey, In Extreme South Texas (Usa), Kristen Phillips, Frederic Zaidan, Omar R. Elizondo, Kristine L. Lowe

School of Integrative Biological & Chemical Sciences (Formerly Dept. of Biology)

Background

La Sal del Rey ("the King's Salt") is one of several naturally-occurring salt lakes in Hidalgo County, Texas and is part of the Lower Rio Grande Valley National Wildlife Refuge. The research objective was to isolate and characterize halophilic microorganisms from La Sal del Rey. Water samples were collected from the lake and a small creek that feeds into the lake. Soil samples were collected from land adjacent to the water sample locations. Sample salinity was determined using a refractometer. Samples were diluted and cultured on a synthetic saline medium to grow halophilic bacteria. The density of halophiles was …

Sudado De Raya: An Ancient Peruvian Dish, Robert Bradley

School of Art & Design Faculty Publications

This article delineates the ancient culinary origins of a stew made from ray meat, which remains popular to this day in villages on Peru's North Coast. The major components of the dish (ray meat, chicha beer, ají pepper, and mococho edible seaweed) are thoroughly discussed in reference to the pre-Columbian record and the preparation of the recipe. The ancient Peruvian tradition of fishing is outlined and numerous references are made to maritime imagery in the art of the prehispanic Moche people. The cultural tradition and architecture of the Moche serve as a backdrop for the entire discussion.

Effects Of Hypoxia Exposure On Hepatic Cytochrome P450 1a (Cyp1a) Expression In Atlantic Croaker: Molecular Mechanisms Of Cyp1a Down-Regulation, Md. Saydur Rahman, Peter Thomas

School of Earth, Environmental, & Marine Sciences Faculty Publications

Hypoxia-inducible factor-α (HIF-α) and cytochrome P450 1A (CYP1A) are biomarkers of environmental exposure to hypoxia and organic xenobiotic chemicals that act through the aryl hydrocarbon receptor, respectively. Many aquatic environments heavily contaminated with organic chemicals, such as harbors, are also hypoxic. Recently, we and other scientists reported HIF-α genes are upregulated by hypoxia exposure in aquatic organisms, but the molecular mechanisms of hypoxia regulation of CYP1A expression have not been investigated in teleost fishes. As a first step in understanding the molecular mechanisms of hypoxia modulation of CYP1A expression in fish, we characterized CYP1A cDNA from croaker liver. Hypoxia exposure …

Differences In Immune Defense Evasion Of Selected Inbred Lines Of Heterorhabditis Bacteriophora In Two White Grub Species, Ruisheng An, Marcio Voss, Ganpati B. Jagdale, Parwinder Grewal

School of Earth, Environmental, & Marine Sciences Faculty Publications

We determined virulence of seven Heterorhabditis bacteriophora strain GPS11 inbred lines possessing superior infective juvenile longevity, and heat and ultra violet radiation tolerance against white grubs Popillia japonica and Cyclocephala borealis. At 1 and 2 weeks after treatment, inbred line A2 was significantly more virulent towards P. japonica compared to the parent strain GPS11 and inbred lines A7, A8, A12 and A21; and line A2 caused significantly higher C. borealis mortality than lines A6 and A12. Penetration, encapsulation and survival of two inbred lines, A2 and A12, that showed the highest and lowest virulence against both grub species were then …

Would Predatory Drillhole Frequency On Chione Spp. Increase Under The Suggested Climate Change Scenario? Comparing Pleistocene And Modern Rhodolith Beds, Carlos E. Cintra-Buenrostro

School of Earth, Environmental, & Marine Sciences Faculty Publications

The analysis of predatory drillholes allow paleontologists to reconstruct trophic relationships of ancient systems. To evaluate the potential effects of climate and sea level change on predation frequency by gastropods on bivalves, species of the genus Chione from the Gulf of California were selected because they are a commercially exploited resource - at least locally - and abundant in both modern and Pleistocene (sea level high stand of oxygen substage 5e) samples from rhodolith beds. The present study focused to answer a practical question: would predation on Chione spp. increase under the suggested climate - warming - change scenario? A …

Extensive Reproductive Disruption, Ovarian Masculinization And Aromatase Suppression In Atlantic Croaker In The Northern Gulf Of Mexico Hypoxic Zone, Peter Thomas, Md. Saydur Rahman

School of Earth, Environmental, & Marine Sciences Faculty Publications

The long-term impacts on marine ecosystems of the recent dramatic worldwide increase in the incidence of coastal hypoxia are unknown. Here, we show widespread reproductive disruption in Atlantic croakers collected from hypoxic sites approximately 120 km apart in the extensive northern Gulf of Mexico continental shelf hypoxic zone. Gonadal growth and gamete production were impaired in croakers from hypoxic sites compared with fish from reference normoxic sites east of the Mississippi River Delta. Male germ cells were detected in approximately 19 per cent of croaker ovaries collected in the hypoxic region, but were absent in ovaries from normoxic sites. In …

Selective Capture Of Transcribed Sequences: A Promising Approach For Investigating Bacterium-Insect Interactions, Ruisheng An, Parwinder Grewal

School of Earth, Environmental, & Marine Sciences Faculty Publications

Bacterial interactions with eukaryotic hosts are complex processes which vary from pathogenic to mutualistic. Identification of bacterial genes differentially expressed in the host, promises to unravel molecular mechanisms driving and maintaining such interactions. Several techniques have been developed in the past 20 years to investigate bacterial gene expression within their hosts. The most commonly used techniques include in-vivo expression technology, signature-tagged mutagenesis, differential fluorescence induction, and cDNA microarrays. However, the limitations of these techniques in analyzing bacterial in-vivo gene expression indicate the need to develop alternative tools. With many advantages over the other methods for analyzing bacterial in-vivo gene expression, …

Would Predatory Drillhole Frequency On Chione Spp. Increase Under The Suggested Climate Change Scenario? Comparing Pleistocene And Modern Rhodolith Beds, Carlos E. Cintra-Buenrostro

School of Earth, Environmental, & Marine Sciences Faculty Publications

The analysis of predatory drillholes allow paleontologists to reconstruct trophic relationships of ancient systems. To evaluate the potential effects of climate and sea level change on predation frequency by gastropods on bivalves, species of the genus Chione from the Gulf of California were selected because they are a commercially exploited resource - at least locally - and abundant in both modern and Pleistocene (sea level high stand of oxygen substage 5e) samples from rhodolith beds. The present study focused to answer a practical question: would predation on Chione spp. increase under the suggested climate - warming - change scenario? A …

Cyperus Albostriatus (Cyperaceae) New To North America And Fimbristylis Cymosa (Cyperaceae) New To Texas, David J. Rosen, Richard Carter, Alfred Richardson, Ken King

School of Integrative Biological & Chemical Sciences (Formerly Dept. of Biology)

Cyperus albostriatus is reported as a naturalized component of the North American flora based upon recent collections from Harris County, Texas. Fimbristylis cymosa was recently collected from Padre Island in Cameron County and is reported new to the Texas flora

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Se cita Cyperus albostriatus como un componente naturalizado de fa flora de Norte América basados en colecciones recientes en el condado de Harris, Texas. Fimbristylis cymosa se coleco recientemente en Padre Island en el condado de Cameron )' se cita como nueva para la flora de Texas

The Direct Role Of Enzyme Hydrolysis On Ammonium Regeneration Rates In Estuarine Sediments, Afonso C. Souza, Tamara K. Pease, Wayne S. Gardner

School of Integrative Biological & Chemical Sciences (Formerly Dept. of Biology)

Benthic ammonium (NH4 +) regeneration in coastal marine sediments has a fundamental role in nitrogen (N) cycling and N supply to primary producers. Nitrogen regeneration involves benthic microbial mineralization of organic-N, which, in turn, depends on protein hydrolysis. These processes were examined in Aransas Bay (Texas, USA) sediments by monitoring NH4 + evolution as a function of enzyme activity in controlled sediment slurries. Casein and tannic acid were added to evaluate the direct role of aminopeptidase on NH4 + production and the effects of a polyphenolic enzyme inhibitor, respectively. Casein additions increased the NH4 + concentration from 19 ± 0.3 …

The Study Of The Parasitic Fauna In Sciaenops Ocellatus, Lower Laguna Madre, Texas, Veronica Abrigo

Theses and Dissertations - UTB/UTPA

Parasitological investigations provide information on ecosystem health because parasite prevalence and abundance are influenced by biotic and abiotic environmental changes. This survey classified the parasitic fauna of red drum, Sciaenops ocellatus, in the Lower Laguna Madre, TX. Fish (n = 239) were collected from four study sites (May 2005 - June 2006). Parasite identification consisted of digenean and monogenean trematodes, cestodes, larval nematodes, copepods, and protozoans. Parasite prevalence and host length was positively correlated from South Bay (r=0.473), Port Isabel (r=0.533), Arroyo(r=0.314), and Port Mansfield (r=0.630). Significant differences (p<0.001) between zone and parasite prevalence from Arroyo site indicated a higher prevalence of protozoa and monogeneans and reduced prevalence of digeneans. Statistical analyses indicated the greatest difference between Port Isabel and Arroyo sites ( divided by 2= 48.195; p<0.001; df= 14), and the least difference between South Bay and Arroyo sites ( divided by 2= 20.847; p= 1.06; df= 14).

Characterization And Antibiotic Resistance Profile Of Staphylococci In The Lower Rio Grande Valley, Diana E. Trevino

Theses and Dissertations - UTB/UTPA

Staphylococci from part of the natural flora of humans and some, like Staphylococcus aureus, appear to be evolving antibiotic resistance. The Lower Rio Grande Valley (LRGV) is an area of interest due to its proximity to the US/Mexico border where antibiotics could recently be purchased without prescription. Two libraries from community association (CA-S) and environmental association (E-S) have been collected and the staphylococci isolated. We hypothesize that their SCCmec type, which aids the staphylococci in antibiotic resistance, will not display classically defined association schemes and will surface in many species of staphylococci. This study generates antibiotic resistance profiles via antibiotic …

Fabrication Of Mineralized Collagen From Bovine Waste Materials By Hydrothermal Method As Promised Biomaterials, Faheem A. Sheikh, M. A. Kanjwal, Javier Macossay-Torres, Muneeb A. Muhammad, Travis Cantu, Ioannis S. Chronakis, N. A. M. Barakat, Hak Yong Kim

School of Integrative Biological & Chemical Sciences (Formerly Dept. of Chemistry)

In the present study, we aimed to produce mineralized-collagen by hydrothermal process. A simple method not depending on additional foreign chemicals has been employed to isolate the mineralized-collagen fibers from bovine waste. The process of extraction involves the use of hydrothermal method from available bovine bones. The structural and morphological properties of the collagen fibers were characterized by using scanning electron microscopy and transmission electron microscopy. These results indicated well received collagen fibers, having a diameter less than 1 μm and with established mineral content in the individual fibers. The X-ray diffraction showed the crystalline feature of the obtained nano-compounds. …

A Moderate Elevation Of Circulating Levels Of Igf-I Does Not Alter Erbb2 Induced Mammary Tumorigenesis, Robert K. Dearth, Isere Kuiatse, Yu-Fen Wang, Lan Liao, Susan G. Hilsenbeck, Powel H. Brown, Jianming Xu, Adrian V. Lee

School of Integrative Biological & Chemical Sciences (Formerly Dept. of Biology)

Background

Epidemiological evidence suggests that moderately elevated levels of circulating insulin-like growth factor-I (IGF-I) are associated with increased risk of breast cancer in women. How circulating IGF-I may promote breast cancer incidence is unknown, however, increased IGF-I signaling is linked to trastuzumab resistance in ErbB2 positive breast cancer. Few models have directly examined the effect of moderately high levels of circulating IGF-I on breast cancer initiation and progression. The purpose of this study was to assess the ability of circulating IGF-I to independently initiate mammary tumorigenesis and/or accelerate the progression of ErbB2 mediated mammary tumor growth.

Methods

We crossed heterozygous …

Monitoring Atrazine-Degrading And Atrazine-Tolerant Bacterial Populations In Lower Rio Grande Valley Agricultural Canals Using Quantitative-Pcr And Internal Atza Primers, Ibdanelo Cortez

Theses and Dissertations - UTB/UTPA

The research hypothesis was that atrazine-degrading bacteria would be detectable during the planting and rainy seasons with their populations dissipating during non-planting and dry seasons in 2010-2011. Atrazine concentration was detected in March, May, June and August for all canals with June having the highest average concentration of 0.77ppb. Gene atzA abundance was detected from June through August with July samples having the highest gene abundance of 250.6 (pg). Tolerant bacterial densities were detectable from March through June. Atrazine concentration and population abundance were not statistically different during planting and non-planting, rainy and dry seasons, although there was a trend …

Variation In Parenting Style In A Captive Group Of Western Lowlands Gorillas, Ana E. Fernandez

Theses and Dissertations - UTB/UTPA

Parenting styles were examined in a group of western lowland gorillas to determine the relationship between parenting style and multiple births with a single individual. Another interest in this study was on varying ways that motherhood can be approached, with partial attention to the relationship between parenting style and social rank. Observational data was collected by means of focal animal sampling and used to analyze contact behaviors in mother-infant relationship. Results indicated that parenting style stayed consistent within the same mother, but different between mothers.

Phylogenetic Analysis Of Serine Proteases From Russell's Viper (Daboia Russelli Siamensis) And Agkistrodon Piscivorus Leucostoma Venom, Pattadon Sukkapan, Ying Jia, Issarang Nuchprayoon, John C. Pérez

School of Integrative Biological & Chemical Sciences (Formerly Dept. of Biology)

Serine proteases are widely found in snake venoms. They have variety of functions including contributions to hemostasis. In this study, five serine proteases were cloned and characterized from two different cDNA libraries: factor V activator (RVV-V), alpha fibrinogenase (RVAF) and beta fibrinogenase (RVBF) from Russell's viper (Daboia russelli siamensis), and plasminogen activator (APL-PA) and protein C activator (APL-C) from Agkistrodon piscivorus leucostoma. The snake venom serine proteases were clustered in phylogenetic tree according to their functions. KA/KS values suggested that accelerated evolution has occurred in the mature protein coding regions in cDNAs of snake venom …