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Articles 961 - 990 of 2279

Full-Text Articles in Life Sciences

Author Correction: Evolutionary History Of Plant Hosts And Fungal Symbionts Predicts The Strength Of Mycorrhizal Mutualism, Jason D. Hoeksema, James D. Bever, Sounak Chakraborty, V. Bala Chaudhary, Monique Gardes, Catherine A. Gehring, Miranda M. Hart, Elizabeth A. Housworth, Wittaya Kaonongbua, Marc J. Lajeunesse Jan 2018

Author Correction: Evolutionary History Of Plant Hosts And Fungal Symbionts Predicts The Strength Of Mycorrhizal Mutualism, Jason D. Hoeksema, James D. Bever, Sounak Chakraborty, V. Bala Chaudhary, Monique Gardes, Catherine A. Gehring, Miranda M. Hart, Elizabeth A. Housworth, Wittaya Kaonongbua, Marc J. Lajeunesse

Integrative Biology Faculty and Staff Publications

In the original published version of the article, the description of the fixed-effect predictor Inoculum Complexity presented in the Methods was incorrect. The incorrect description given was: “single fungal genus, multiple fungal genera, or whole soil inoculum”. The correct description is: “single fungal species, multiple fungal species, or whole soil inoculum”. The error does not affect any of the results presented in the paper. The correction has been made to the HTML and PDF versions of the paper.

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Ecological And Indigenous Community Impacts Of Oil Spill Mortality In Alaskan Marine Ecosystems, Paul M. Suprenand, Carie Hoover, Cameron H. Ainsworth, L. Dornberger, C. J. Johnson Jan 2018

Ecological And Indigenous Community Impacts Of Oil Spill Mortality In Alaskan Marine Ecosystems, Paul M. Suprenand, Carie Hoover, Cameron H. Ainsworth, L. Dornberger, C. J. Johnson

Marine Science Faculty Publications

While hydrocarbon exploration and extraction in the Arctic ebbs and flows, reduced sea ice has opened new travel routes across the Arctic. The opening of the Northwest Passage has allowed larger ships (including oil tankers) and higher traffic into remote regions. More ice loss is expected in the future. With this comes the potential for hydrocarbon spills. To quantify the ecosystem impacts of a spill in the Alaska North Slope region, an Ecospace model using the Ecopath with Ecosim software was developed. We highlight the impacts of four potential hydrocarbon contamination scenarios: a subsurface crude oil pipeline release, a surface …

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Storm Surge Reconstruction And Return Water Level Estimation In Southeast Asia For The 20th Century, Alba Cid, Thomas Wahl, Don P. Chambers, Sanne Muis Jan 2018

Storm Surge Reconstruction And Return Water Level Estimation In Southeast Asia For The 20th Century, Alba Cid, Thomas Wahl, Don P. Chambers, Sanne Muis

Marine Science Faculty Publications

We present a methodology to reconstruct the daily maximum storm surge levels, obtained from tide gauges, based on the surrounding atmospheric conditions from an atmospheric reanalysis (20th Century Reanalysis—20CR). Tide gauge records in Southeast Asia are relatively short, so this area is often underrepresented in studies based on long observational records, and there are just a few studies that have analyzed storm surge trends, variability or return water levels (RWLs) from numerical models in this area. Here we develop, calibrate, and validate a multivariate linear regression model that relates the storm surge with the principal components of the local atmospheric …

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Unprecedented Diversity Of Ssdna Phages From The Family Microviridae Detected Within The Gut Of A Protochordate Model Organism (Ciona Robusta), Alexandria Creasy, Karyna Rosario, Brittany A. Leigh Jan 2018

Unprecedented Diversity Of Ssdna Phages From The Family Microviridae Detected Within The Gut Of A Protochordate Model Organism (Ciona Robusta), Alexandria Creasy, Karyna Rosario, Brittany A. Leigh

Marine Science Faculty Publications

Phages (viruses that infect bacteria) play important roles in the gut ecosystem through infection of bacterial hosts, yet the gut virome remains poorly characterized. Mammalian gut viromes are dominated by double-stranded DNA (dsDNA) phages belonging to the order Caudovirales and single-stranded DNA (ssDNA) phages belonging to the family Microviridae. Since the relative proportion of each of these phage groups appears to correlate with age and health status in humans, it is critical to understand both ssDNA and dsDNA phages in the gut. Building upon prior research describing dsDNA viruses in the gut of Ciona robusta, a marine invertebrate model system …

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Influence Of River-Induced Fronts On Hydrocarbon Transport: A Multiplatform Observational Study, Yannis Androulidakis, Vassiliki Kourafalou, Tamay Özgökmen, Oscar Garcia-Pineda, Björn Lund, Matthieu Le Hénaff, Chuanmin Hu, Brian K. Haus, Guillaume Novelli, Cedric Guigand, Heesook Kang, Lars Hole, Jochen Horstmann Jan 2018

Influence Of River-Induced Fronts On Hydrocarbon Transport: A Multiplatform Observational Study, Yannis Androulidakis, Vassiliki Kourafalou, Tamay Özgökmen, Oscar Garcia-Pineda, Björn Lund, Matthieu Le Hénaff, Chuanmin Hu, Brian K. Haus, Guillaume Novelli, Cedric Guigand, Heesook Kang, Lars Hole, Jochen Horstmann

Marine Science Faculty Publications

The Taylor Energy Site is located in the vicinity of the Mississippi Delta region over the Northern Gulf of Mexico (NGoM). Surface oil patches have been persistently observed within this site since 2004, when an oil rig was destroyed by Hurricane Ivan. A multiplatform observational experiment was conducted in April 2017 to investigate, for the first time, the main hydrocarbon pathways from the Taylor Energy Site toward the NGoM continental shelves, and the Gulf interior, under the influence of local and regional physical processes. Results indicate that the Mississippi River (MR)-induced fronts over the Taylor Energy Site, in combination with …

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Near-Complete Genome Sequence Of A Novel Single-Stranded Rna Virus Discovered In Indoor Air, Karyna Rosario, Noah Fierer, Mya Breitbart Jan 2018

Near-Complete Genome Sequence Of A Novel Single-Stranded Rna Virus Discovered In Indoor Air, Karyna Rosario, Noah Fierer, Mya Breitbart

Marine Science Faculty Publications

Viral metagenomic analysis of heating, ventilation, and air conditioning (HVAC) filters recovered the near-complete genome sequence of a novel virus, named HVAC-associated RNA virus 1 (HVAC-RV1). The HVAC-RV1 genome is most similar to those of picorna-like viruses identified in arthropods but encodes a small domain observed only in negative-sense single-stranded RNA viruses.

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Genomic Evolution, Recombination, And Inter-Strain Diversity Of Chelonid Alphaherpesvirus 5 From Florida And Hawaii Green Sea Turtles With Fibropapillomatosis, Cheryl Morrison, Luke Iwanowicz, Thierry Work, Elizabeth Fahsbender, Mya Breitbart, Cynthia Adams, Deb Iwanowicz, Lakyn Sanders, Mathias Ackermann, Robert Cornman Jan 2018

Genomic Evolution, Recombination, And Inter-Strain Diversity Of Chelonid Alphaherpesvirus 5 From Florida And Hawaii Green Sea Turtles With Fibropapillomatosis, Cheryl Morrison, Luke Iwanowicz, Thierry Work, Elizabeth Fahsbender, Mya Breitbart, Cynthia Adams, Deb Iwanowicz, Lakyn Sanders, Mathias Ackermann, Robert Cornman

Marine Science Faculty Publications

Chelonid alphaherpesvirus 5 (ChHV5) is a herpesvirus associated with fibropapillomatosis (FP) in sea turtles worldwide. Single-locus typing has previously shown differentiation between Atlantic and Pacific strains of this virus, with low variation within each geographic clade. However, a lack of multi-locus genomic sequence data hinders understanding of the rate and mechanisms of ChHV5 evolutionary divergence, as well as how these genomic changes may contribute to differences in disease manifestation. To assess genomic variation in ChHV5 among five Hawaii and three Florida green sea turtles, we used high-throughput short-read sequencing of long-range PCR products amplified from tumor tissue using primers designed …

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A Centuries-Long Delay Between A Paleo-Ice-Shelf Collapse And Grounding-Line Retreat In The Whales Deep Basin, Eastern Ross Sea, Antarctica, Philip J. Bart, Matthew Decesare, Brad E. Rosenheim, Wojceich Majewski, Austin Mcglannan Jan 2018

A Centuries-Long Delay Between A Paleo-Ice-Shelf Collapse And Grounding-Line Retreat In The Whales Deep Basin, Eastern Ross Sea, Antarctica, Philip J. Bart, Matthew Decesare, Brad E. Rosenheim, Wojceich Majewski, Austin Mcglannan

Marine Science Faculty Publications

Recent thinning and loss of Antarctic ice shelves has been followed by near synchronous acceleration of ice flow that may eventually lead to sustained deflation and significant contraction in the extent of grounded and floating ice. Here, we present radiocarbon dates from foraminifera that constrain the time elapsed between a previously described paleo-ice-shelf collapse and the subsequent major grounding-line retreat in the Whales Deep Basin (WDB) of eastern Ross Sea. The dates indicate that West Antarctic Ice Sheet (WAIS) grounding-line retreat from the continental shelf edge was underway prior to 14.7 ± 0.4 cal kyr BP. A paleo-ice-shelf collapse occurred …

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Autonomous Biogeochemical Floats Detect Significant Carbon Dioxide Outgassing In The High-Latitude Southern Ocean, Alison R. Gray, Kenneth S. Johnson, Seth M. Bushinsky, Stephen C. Riser, Joellen L. Russell, Lynne D. Talley, Rik Wanninkhof, Nancy L. Williams, Jorge L. Sarmiento Jan 2018

Autonomous Biogeochemical Floats Detect Significant Carbon Dioxide Outgassing In The High-Latitude Southern Ocean, Alison R. Gray, Kenneth S. Johnson, Seth M. Bushinsky, Stephen C. Riser, Joellen L. Russell, Lynne D. Talley, Rik Wanninkhof, Nancy L. Williams, Jorge L. Sarmiento

Marine Science Faculty Publications

Although the Southern Ocean is thought to account for a significant portion of the contemporary oceanic uptake of carbon dioxide (CO2), flux estimates in this region are based on sparse observations that are strongly biased toward summer. Here we present new estimates of Southern Ocean air-sea CO2 fluxes calculated with measurements from biogeochemical profiling floats deployed by the Southern Ocean Carbon and Climate Observations and Modeling project during 2014–2017. Compared to ship-based CO2 flux estimates, the float-based fluxes find significantly stronger outgassing in the zone around Antarctica where carbon-rich deep waters upwell to the surface ocean. …

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Ocean Futures Under Ocean Acidification, Marine Protection, And Changing Fishing Pressures Explored Using A Worldwide Suite Of Ecosystem Models, Erik Olsen, Isaac C. Kaplan, Cameron Ainsworth, Gavin Fay, Sarah Gaichas, Robert Gamble, Raphael Girardin, Cecilie H. Eide, Thomas F. Ihde, Hem Nalini Morzaria-Luna, Kelli F. Johnson, Marie Savina-Rolland, Howard Townsend, Mariska Weijerman, Elizabeth A. Fulton, Jason S. Link Jan 2018

Ocean Futures Under Ocean Acidification, Marine Protection, And Changing Fishing Pressures Explored Using A Worldwide Suite Of Ecosystem Models, Erik Olsen, Isaac C. Kaplan, Cameron Ainsworth, Gavin Fay, Sarah Gaichas, Robert Gamble, Raphael Girardin, Cecilie H. Eide, Thomas F. Ihde, Hem Nalini Morzaria-Luna, Kelli F. Johnson, Marie Savina-Rolland, Howard Townsend, Mariska Weijerman, Elizabeth A. Fulton, Jason S. Link

Marine Science Faculty Publications

Ecosystem-based management (EBM) of the ocean considers all impacts on and uses of marine and coastal systems. In recent years, there has been a heightened interest in EBM tools that allow testing of alternative management options and help identify tradeoffs among human uses. End-to-end ecosystem modeling frameworks that consider a wide range of management options are a means to provide integrated solutions to the complex ocean management problems encountered in EBM. Here, we leverage the global advances in ecosystem modeling to explore common opportunities and challenges for ecosystem-based management, including changes in ocean acidification, spatial management, and fishing pressure across …

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Virus Discovery In All Three Major Lineages Of Terrestrial Arthropods Highlights The Diversity Of Single-Stranded Dna Viruses Associated With Invertebrates, Karyna Rosario, Kaitlin Mettel, Bayleigh Benner, Ryan Johnson, Catherine Scott, Sohath Yusseff-Vanegas, Christopher Baker, Deby Cassill, Caroline Storer, Arvind Varsani, Mya Breitbart Dec 2017

Virus Discovery In All Three Major Lineages Of Terrestrial Arthropods Highlights The Diversity Of Single-Stranded Dna Viruses Associated With Invertebrates, Karyna Rosario, Kaitlin Mettel, Bayleigh Benner, Ryan Johnson, Catherine Scott, Sohath Yusseff-Vanegas, Christopher Baker, Deby Cassill, Caroline Storer, Arvind Varsani, Mya Breitbart

Marine Science Faculty Publications

Viruses encoding a replication-associated protein (Rep) within a covalently closed, single-stranded (ss)DNA genome are among the smallest viruses known to infect eukaryotic organisms, including economically valuable agricultural crops and livestock. Although circular Rep-encoding ssDNA (CRESS DNA) viruses are a widespread group for which our knowledge is rapidly expanding, biased sampling toward vertebrates and land plants has limited our understanding of their diversity and evolution. Here, we screened terrestrial arthropods for CRESS DNA viruses and report the identification of 44 viral genomes and replicons associated with specimens representing all three major terrestrial arthropod lineages, namely Euchelicerata (spiders), Hexapoda (insects), and Myriapoda …

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The Blurred Line Between Photic And Aphotic Environments: A Large Mexican Cave With Almost No Dark Zone, Luis M. Mejía-Ortíz, Tanja Pipan, David C. Culver, Peter Sprouse Dec 2017

The Blurred Line Between Photic And Aphotic Environments: A Large Mexican Cave With Almost No Dark Zone, Luis M. Mejía-Ortíz, Tanja Pipan, David C. Culver, Peter Sprouse

International Journal of Speleology

Sistema Muévelo Rico is a 1.2 km long cave in Quintana Roo, less than 2 km from the Caribbean Sea. We measured illuminance to a level of 0.1 lux, organic matter (weight loss on ignition), temperature, and relative humidity. The last two were measured at hourly intervals for nearly one year. Approximately one-third of the cave has illuminance values greater than 0.01 lux, and most of the rest of the cave has light as well. Temperature and relative humidity were relatively constant, but they showed a daily cycle at all stations, albeit with different strengths. Organic matter averaged 8%, intermediate …

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Assessing Preservation Priorities Of Caves And Karst Areas Using The Frequency Of Endemic Cave-Dwelling Species, Eugen Nitzu, Marius Vlaicu, Andrei Giurginca, Ioana N. Meleg, Ionut Popa, Augustin Nae, Ştefan Baba Dec 2017

Assessing Preservation Priorities Of Caves And Karst Areas Using The Frequency Of Endemic Cave-Dwelling Species, Eugen Nitzu, Marius Vlaicu, Andrei Giurginca, Ioana N. Meleg, Ionut Popa, Augustin Nae, Ştefan Baba

International Journal of Speleology

Endemic and rare species as bioindicators of habitat vulnerability were used to develop protection and management plans for biotope prioritization (mainly islands habitats, lava tubes or groundwaters). Due to their narrow distribution, the endemic species (species confined to a restricted geographic area) are more susceptible to ecological disequilibrium and habitat loss than the widespread ones. Consequently, endemics become endangered in the context of ecological disturbance caused by anthropogenic pressure, making them suitable candidates to assess environmental preservation needs. Taking into consideration that most of the stygobitic and troglobitic species are endemic and confined to specific karst areas, based on their …

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Automated Classification Of Dolphin Echolocation Click Types From The Gulf Of Mexico, Kaitlin E. Fraiser, Marie A. Roch, Melissa S. Soldevilla, Lance P. Garrison, John A. Hildebrand Dec 2017

Automated Classification Of Dolphin Echolocation Click Types From The Gulf Of Mexico, Kaitlin E. Fraiser, Marie A. Roch, Melissa S. Soldevilla, Lance P. Garrison, John A. Hildebrand

C-IMAGE Publications

Delphinids produce large numbers of short duration, broadband echolocation clicks which may be useful for species classification in passive acoustic monitoring efforts. A challenge in echolocation click classification is to overcome the many sources of variability to recognize underlying patterns across many detections. An automated unsupervised network-based classification method was developed to simulate the approach a human analyst uses when categorizing click types: Clusters of similar clicks were identified by incorporating multiple click characteristics (spectral shape and inter-click interval distributions) to distinguish within-type from between-type variation, and identify distinct, persistent click types. Once click types were established, an algorithm for …

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Investigations Into The Non-Mevalonate Isoprenoid Biosynthesis Pathway's First Two Enzymes Utilizing Hybrid Qm/Mm Techniques, Justin K. White Nov 2017

Investigations Into The Non-Mevalonate Isoprenoid Biosynthesis Pathway's First Two Enzymes Utilizing Hybrid Qm/Mm Techniques, Justin K. White

USF Tampa Graduate Theses and Dissertations

Molecular drug design begins with the identication of a problem to solve. This work identies the growing resistance among human pathogens to current treatments. Once the problem is identied and understood, solutions must be proposed. This one is straight forward, we need new antimicrobial drugs. More specically, we need to identify novel targets to inhibit. A large portion of antibiotics focus on disruption of macromolecular production while only a few target metabolic systems. Finally, you need to propose solutions based on the information gathered. In order to avoid existing resistance, it is important to avoid the macromolecular route and focus …

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18f-Fdg Pet/Ctct-Based Radiomics For The Prediction Of Radiochemotherapy Treatment Outcomes Of Cervical Cancer, Badereldeen Abdulmajeed Altazi Nov 2017

18f-Fdg Pet/Ctct-Based Radiomics For The Prediction Of Radiochemotherapy Treatment Outcomes Of Cervical Cancer, Badereldeen Abdulmajeed Altazi

USF Tampa Graduate Theses and Dissertations

Cervical cancer remains the third most commonly diagnosed gynecological malignancy in the United States and throughout the world despite being potentially preventable. Patients diagnosed with cervical cancer may develop local recurrence in the cervix and surrounding structures (vaginal apex, parametrial, or paracervical), regional recurrence in pelvic lymph nodes, distant metastasis, or a combination of all. The management of such treatment outcomes has not been subject to rigorous investigation. Therefore, there is a need for studies and clinical trials that focus on decision making to support the choice of the best treatment modality that leads to the minimal number of adverse …

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Cost-Effectiveness Analysis Of Targeted Herpes Zoster Vaccination In Adults 50-59 At Increased Cardiovascular Risk, Kathleen M. Glassner Nov 2017

Cost-Effectiveness Analysis Of Targeted Herpes Zoster Vaccination In Adults 50-59 At Increased Cardiovascular Risk, Kathleen M. Glassner

USF Tampa Graduate Theses and Dissertations

Background: Over the last twenty years the incidence of herpes zoster (HZ) infection, also known as shingles, has been increasing among adults for unknown reasons. The economic burden of HZ is currently estimated at over $1 billion per year in the United States (U.S.) and is expected to increase as the susceptible adult population ages. HZ is caused by a re-activation of the varicella zoster virus (VZV), chicken pox, and more than 95% of adults living today carry the virus with a lifetime risk of 1 in 3 for developing HZ. In 2006 the FDA approved a vaccine for the …

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Glomerular Hyperfiltration And Hypertension In Diabetes, Jie Zhang Nov 2017

Glomerular Hyperfiltration And Hypertension In Diabetes, Jie Zhang

USF Tampa Graduate Theses and Dissertations

In the present study, we investigated the pathophysiological mechanisms of the hemodynamic alteration in diabetes. Glomerular hyperfiltration occurs in the early stage of diabetes mellitus and has been recognized to promote the pathogenesis of diabetic nephropathy. We determine the role of TGF response and the vascular tone of Af-Art in diabetic hyperfiltration and we found that 1) tubular high glucose directly activates NOS1 and increases NO generation in the macula densa, which inhibits TGF response and increases GFR; 2) high glucose dilates renal Af-Art through GLUT1 and mediated by NOS3-derived NO generation; 3) in diabetes, blunted TGF mediated by NOS1 …

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Role Of Heat Shock Transcription Factor 1 In Ovarian Cancer Epithelial-Mesenchymal Transition And Drug Sensitivity, Chase David Powell Nov 2017

Role Of Heat Shock Transcription Factor 1 In Ovarian Cancer Epithelial-Mesenchymal Transition And Drug Sensitivity, Chase David Powell

USF Tampa Graduate Theses and Dissertations

The heat shock response (HSR) is a robust cellular reaction to mitigate protein damage from heat and other challenges to the proteome. This protective molecular program in humans is controlled by heat shock transcription factor 1 (HSF1). Activation of HSF1 leads to the induction of an array of cytoprotective genes, many of which code for chaperones. These chaperones, known as heat shock proteins (HSPs), are responsible for maintaining the functional integrity of the proteome. HSPs achieve this by promoting proper folding and assembly of nascent proteins, refolding denatured proteins, and processing for degradation proteins and aggregates which cannot be returned …

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Evaluation Of A Microsphere-Based Immunoassay (Mia) In Measuring Diagnostic And Prognostic Markers Of Dengue Virus Infection, Jason H. Ambrose Nov 2017

Evaluation Of A Microsphere-Based Immunoassay (Mia) In Measuring Diagnostic And Prognostic Markers Of Dengue Virus Infection, Jason H. Ambrose

USF Tampa Graduate Theses and Dissertations

Infections with dengue viruses (DENV) constitute both a global problem as well as locally in Florida. DENV comprise four distinct serotypes of single-stranded RNA viruses and belong to the family Flaviviridae. DENV are among the most medically important arboviruses in the world and cases may currently exceed 400 million per annum. Additionally, dengue established its first recorded endemic transmission cycle in the state of Florida in over a half century, first within the Florida Keys during 2009-10 followed by an unrelated outbreak in Martin County in 2013. The clinical profile of DENV infections ranges from a mild febrile illness …

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Ecological Epigenetics Of Avian Range Expansions, Holly J. Kilvitis Nov 2017

Ecological Epigenetics Of Avian Range Expansions, Holly J. Kilvitis

USF Tampa Graduate Theses and Dissertations

In light of human-mediated environmental change, a fundamental goal for biologists is to determine which phenotypic characteristics enable some individuals, populations or species to be more adept at coping with such change, while rendering others more vulnerable. Studying ongoing range expansions provide a unique opportunity to address this question by allowing documentation of how novel environments shape phenotypic variation on ecological timescales. At range-edges, individuals are exposed to strong selective pressures and population genetic challenges (e.g. bottlenecks and/or founder effects), which make genetic adaptation difficult. Nevertheless, certain species, such as the house sparrow (Passer domesticus), seem to thrive in their …

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A Historical Assessment Of Asbestos Exposure, Abatement Methods And Containment Efficacy During Asbestos Containing Material Removal Activities At A Large Federal Facility, Daniel A. Newfang Nov 2017

A Historical Assessment Of Asbestos Exposure, Abatement Methods And Containment Efficacy During Asbestos Containing Material Removal Activities At A Large Federal Facility, Daniel A. Newfang

USF Tampa Graduate Theses and Dissertations

Asbestos sampling and monitoring data, starting from 2003, located in a large federal facility’s Asbestos Air Database Management (AADM) repository will be queried and analyzed on airborne asbestos fiber concentrations generated from abatement activities of asbestos-containing materials (ACM) and asbestos-containing building materials (ACBM). Historically, concerns expressed by personnel outside of the containment areas, whether adjacent to or quite a distance from the asbestos abatement activities present operational challenges for the project manager, potential angst and uneasiness to personnel residing next to the abatement activity as well as programmatic concerns to the building/facility managers. The concerned individuals working outside the abatement …

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Design And Synthesis Of Cpg-Lytic Peptide Conjugate, Brachytherapy Beads And A Combinatorial Library Of Primary Amines Used As Potential Therapeutics In The Treatment Of Cancers, Josanne-Dee Woodroffe Nov 2017

Design And Synthesis Of Cpg-Lytic Peptide Conjugate, Brachytherapy Beads And A Combinatorial Library Of Primary Amines Used As Potential Therapeutics In The Treatment Of Cancers, Josanne-Dee Woodroffe

USF Tampa Graduate Theses and Dissertations

Cancer remains one of the most feared diseases affecting the modern world. Second to heart disease, it is the largest cause of deaths, affecting one in three persons. Cancer cells are formed when normal, healthy cells become damage, losing their normal regulatory mechanism that control cell growth. There are many different types and progression of these cancer cells that determine the type of treatment a patient receives. The primary focus of this dissertation is to propose three studies of anticancer agents. In Chapter one, a CpG-lytic peptide conjugate was designed to target receptors on the cell membrane to concentrate the …

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The Role Of Sgs1 And Exo1 In The Maintenance Of Genome Stability., Lillian Campos-Doerfler Nov 2017

The Role Of Sgs1 And Exo1 In The Maintenance Of Genome Stability., Lillian Campos-Doerfler

USF Tampa Graduate Theses and Dissertations

Genome instability is a hallmark of human cancers. Patients with Bloom’s syndrome, a rare chromosome breakage syndrome caused by inactivation of the RecQ helicase BLM, result in phenotypes associated with accelerated aging and develop cancer at a very young age. Patients with Bloom’s syndrome exhibit hyper-recombination, but the role of BLM and increased genomic instability is not fully characterized. Sgs1, the only member of the RecQ family of DNA helicases in Saccharomyces cerevisiae, is known to act both in early and late stages of homology-dependent repair of DNA damage. Exo1, a 5′–3′ exonuclease, first discovered to play a role …

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Rehabilitating Asymmetric Gait Using Asymmetry, Tyagi Ramakrishnan Nov 2017

Rehabilitating Asymmetric Gait Using Asymmetry, Tyagi Ramakrishnan

USF Tampa Graduate Theses and Dissertations

Human gait is a complex process that involves the coordination of the central nervous and muscular systems. A disruption to the either system results in the impairment of a person’s ability to walk. Impairments can be caused by neurological disorders such as stroke and physical conditions like amputation. There is not a standardized method to quantitatively assess the gait asymmetry of affected subjects. The purpose of this research is to understand the fundamental aspects of asymmetrical effects on the human body and improve rehabilitation techniques and devices. This research takes an interdisciplinary approach to address the limitations with current rehabilitation …

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The Ecology Of Antibiotic Resistance: Sources And Persistence Of Vancomycin-Resistant Enterococci And Antibiotic Resistant Genes In Aquatic Environments, Suzanne M. Young Nov 2017

The Ecology Of Antibiotic Resistance: Sources And Persistence Of Vancomycin-Resistant Enterococci And Antibiotic Resistant Genes In Aquatic Environments, Suzanne M. Young

USF Tampa Graduate Theses and Dissertations

The growing crisis of antibiotic resistance is a major threat to ecosystems and human health. Infections caused by known and emerging antibiotic resistant pathogens are on the rise globally, with approximately 700,000 deaths per year caused by antibiotic resistant bacteria (1). In the United States, infections from antibiotic resistant bacteria cause more than 2 million illnesses and 23,000 deaths (2). Antibiotic resistant bacteria and antibiotic resistance genes are released into aquatic ecosystems through hospital waste, residential sewer lines and animal agricultural waste streams. Animal agriculture accounts for approximately 70% of antibiotic use in the United States (3). In agricultural ecosystems, …

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Mechanism Elucidation And Inhibitor Discovery Against Serine And Metallo-Beta-Lactamases Involved In Bacterial Antibiotic Resistance, Orville A. Pemberton Nov 2017

Mechanism Elucidation And Inhibitor Discovery Against Serine And Metallo-Beta-Lactamases Involved In Bacterial Antibiotic Resistance, Orville A. Pemberton

USF Tampa Graduate Theses and Dissertations

The emergence and proliferation of Gram-negative bacteria expressing β-lactamases is a significant threat to human health. β-Lactamases are enzymes that degrade the β-lactam antibiotics (e.g., penicillins, cephalosporins, monobactams, and carbapenems) that we use to treat a diverse range of bacterial infections. Specifically, β-lactamases catalyze a hydrolysis reaction where the β-lactam ring common to all β-lactam antibiotics and responsible for their antibacterial activity, is opened, leaving an inactive drug. There are two groups of β-lactamases: serine enzymes that use an active site serine residue for β-lactam hydrolysis and metalloenzymes that use either one or two zinc ions for catalysis. Serine enzymes …

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Bioleaching Potential Of Filamentous Fungi To Mobilize Lithium And Cobalt From Spent Rechargeable Li-Ion Batteries, Aldo Lobos Nov 2017

Bioleaching Potential Of Filamentous Fungi To Mobilize Lithium And Cobalt From Spent Rechargeable Li-Ion Batteries, Aldo Lobos

USF Tampa Graduate Theses and Dissertations

Demand for lithium (Li) and cobalt (Co) is on the rise, due in part to their increased use in rechargeable Li-ion batteries (RLIB). Current recycling processes that utilize chemical leaching efficiently recover in Li and Co from the cathode material in spent batteries; however, these processes are costly and emit hazardous waste into the environment. Therefore, a more sustainable process for recycling Li and Co is needed, and bioleaching may provide a solution. Fungal bioleaching has been shown in previous studies to effectively mobilize metals (Pb, Al, Mn, Cu, and Zn) from mine tailings, electronic scrap, and spent batteries with …

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Disorder Levels Of C-Myb Transactivation Domain Regulate Its Binding Affinity To The Kix Domain Of Creb Binding Protein, Anusha Poosapati Nov 2017

Disorder Levels Of C-Myb Transactivation Domain Regulate Its Binding Affinity To The Kix Domain Of Creb Binding Protein, Anusha Poosapati

USF Tampa Graduate Theses and Dissertations

Intrinsically disordered proteins (IDPs) do not form stable tertiary structures like their ordered partners. They exist as heterogeneous ensembles that fluctuate over a time scale. Intrinsically disordered regions and proteins are found across different phyla and exert crucial biological functions. They exhibit transient secondary structures in their free state and become folded upon binding to their protein partners via a mechanism called coupled folding and binding. Some IDPs form alpha helices when bound to their protein partners. We observed a set of cancer associated IDPs where the helical binding segments of IDPs are flanked by prolines on both the sides. …

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Perceptions Affecting Tree Valuation: An Analysis Of Recently Sold And Leased Properties In Tampa, Florida, Cody R. Winter Nov 2017

Perceptions Affecting Tree Valuation: An Analysis Of Recently Sold And Leased Properties In Tampa, Florida, Cody R. Winter

USF Tampa Graduate Theses and Dissertations

The urban forest is a structure that is fluid in both species composition and how it is integrated in our cities and suburban areas. Much like the fluidity in its structure, the urban forest provides ecosystem services and disservices in many forms. These services and disservices can often come in the form of temperature regulation, lower crime rates, and even higher property values. The latter, which is associated with the economic value of trees, is a part of the hedonic pricing literature which suggests that there is a disparity in the value associated with trees to house prices. With the …

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