Life Sciences Commons^™

Coastal Ocean And Continental Shelves, Chuanmin Hu, Frank Muller-Karger, Lisa Robbins

Marine Science Faculty Publications

No abstract provided.

Remote Sensing Of Sargassum Biomass, Nutrients, And Pigments, Mengqiu Wang, Chuanmin Hu, Jennifer Cannizzaro, David English, Xingxing Han, David Naar, Brian Lapointe, Rachel Brewton, Frank Hernandez

Marine Science Faculty Publications

Field and laboratory experiments are designed to measure Sargassum biomass per area (density), surface reflectance, nutrient contents, and pigment concentrations. An alternative floating algae index-biomass density model is established to link the spectral reflectance to Sargassum biomass density, with a relative uncertainty of ~12%. Monthly mean integrated Sargassum biomass in the Caribbean Sea and central West Atlantic reached at least 4.4 million tons in July 2015. The average %C, %N, and %P per dry weight are 27.16, 1.06, and 0.10, respectively. The mean chlorophyll-a (Chl-a) concentration is ~0.05% of the dry weight. With these parameters, the amounts of nutrients and …

Hurricane-Induced Changes In The Everglades National Park Mangrove Forest: Landsat Observations Between 1985 And 2017, Xingxing Han, Lian Feng, Chuanmin Hu, Philip Kramer

Marine Science Faculty Publications

The Everglades National Park (ENP) has one of the largest mangrove forests in the United States, yet due to lack of data and methods, there has been no multidecadal record of detailed changes in its mangrove forests, not to mention their response to periodic hurricanes. Here, based on remote sensing spectroscopy, multisensor cross calibration, spectral normalization, and pixel unmixing, we develop a stepwise method to map distributions and changes of the ENP mangrove forests and other major wetlands cover types (marshes and hardwood hammocks) over the last three decades. The time series of Landsat-based results indicate statistically significant increasing trend …

Bp Gulf Science Data Reveals Ineffectual Subsea Dispersant Injection For The Macondo Blowout, Claire B. Paris-Limouzy, Igal Berenshtein, Marica L. Trillo, Robin Faillettaz, Maria J. Olascoaga, Zachary M. Aman, Michael Schlüter, Samantha B. Joye

C-IMAGE Publications

After the Deepwater Horizon oil platform explosion, an estimated 172.2 million gallons of gas-saturated oil was discharged uncontrollably into the Gulf of Mexico, causing the largest deep-sea blowout in history. In an attempt to keep the oil submerged, massive quantities of the chemical dispersant Corexit^® 9500 were deployed 1522 m deep at the gushing riser pipe of the Macondo prospect’s wellhead. Understanding the effectiveness of this unprecedented subsea dispersant injection (SSDI) is critical because deep-water drilling is increasing worldwide. Here we use the comprehensive BP Gulf Science Data (GSD) to quantify petroleum dynamics throughout the 87-day long blowout. The …

An Examination Of The Relationship Between Health Literacy And Dietary Practices Among College Students: A Test Of The Integrated Model Of Health Literacy, Alison B. Oberne

USF Tampa Graduate Theses and Dissertations

Overweight and obesity continue to plague Americans and contribute to decreased quantity and quality of life. Americans of all ages experience overweight and obesity; however, increasing rates occur during young adulthood. Young adults develop dietary practice behaviors that persist into adulthood and can contribute to weight-related chronic diseases. Approximately half of all young adults are enrolled in college, and, approximately 38% of college students are either overweight or obese.

Dietary practices are health behaviors that can either increase or decrease risk for overweight and obesity. Much research has explored predictors of dietary practices among college students; however, there is a …

Neutrophil Extracellular Traps And Vascular Barrier Injury, Jamie E. Meegan

USF Tampa Graduate Theses and Dissertations

Sepsis is a life-threatening inflammatory condition with high morbidity and mortality rates. Though improvements to diagnosis and management of sepsis have been made, the complexity of the disease process and an incomplete understanding of its endpoint mechanisms have prevented major breakthroughs for early diagnosis and treatment. Representing a common endpoint in a number of inflammatory injuries including sepsis, endothelial barrier dysfunction causes fluid leakage and leukocyte infiltration that leads to tissue damage and multiple organ failure. Therefore, elucidating mechanisms of endothelial barrier regulation is needed to further develop targeted therapies in inflammatory disease.

Sepsis is characterized by a hyperinflammatory response …

An Investigation Of Habitat Suitability Factors And Their Interactions For Predicting Gopher Tortoise Habitat, Abigail V. Lavallin

USF Tampa Graduate Theses and Dissertations

This thesis evaluates the interaction between four habitat factors vital to the gopher tortoise in Florida. Federally and state listed as threatened throughout its entire range, the gopher tortoise is vital to protect, not only for itself individually but its burrows provide an essential habitat to over 300 species making it a key stone species within its environment. Historic habitat modeling methods are reviewed for the gopher tortoise to highlight the gap on this topic. This research expanded on the methods utilized by Baskaran et al. (2006) evaluating the soil, landcover, percentage of canopy cover and the depth to water …

Gulf-Wide Seafloor Surface Benthic Foraminifera Stable Isotopes From Sediment Cores Collected On Multiple Cruises From 2010-06-13 To 2017-07-19, Patrick Schwing, David J. Hollander

C-IMAGE data

This dataset includes baseline stable carbon and oxygen isotope measurements from benthic foraminifera throughout the Gulf of Mexico. Stable isotope measurements were performed on Cibicidoides spp. The dataset contains the sediment core information such as location, date, and depth; and benthic foraminiferal stable carbon and oxygen isotopes. Sediment cores were collected on multiple cruises from 2010-06-13 to 2017-07-19.

Benthic Foraminiferal Assemblages From Sediment Cores Collected On Multiple Cruises In The Gulf Of Mexico From 2010-11-18 To 2017-05-22, Patrick Schwing, David J. Hollander

C-IMAGE data

This dataset includes baseline assemblage measurements from benthic foraminifera throughout the Gulf of Mexico. The dataset is a compilation of seafloor surface benthic foraminifera assemblages from sediment cores collected on multiple cruises and field sampling in the Gulf of Mexico from 2010-11-18 to 2017-05-22. The dataset contains the Gulf-wide diversity indices and the full benthic taxonomic counts for two regions: Cuba and the southern Gulf of Mexico. The Gulf-wide file contains the total density and diversity calculations using Fisher’s Alpha and Shannon indices from the surface-most sub-sample from each core (typically 0-2 mm). The Gulf-wide spreadsheet is comprised of data …

Short-Lived Radioisotope (Excess Pb210) Measurements From Sediment Cores Collected Throughout The Gulf Of Mexico From 2010-11-07 To 2017-07-20, Patrick Schwing, David Hollander

C-IMAGE data

This dataset includes baseline short-lived radioisotope measurements from sediment cores collected throughout the Gulf of Mexico. Samples were analyzed by gamma spectrometry with High-Purity Germanium (HPGe) gamma-ray detectors (Canberra Coaxial Planar configuration) for total 210Pb (46.5 keV), 214Pb (295 keV and 351 keV), and 214Bi (609 keV) activities. The mean activity of the 214Pb (295 keV), 214Pb (351 keV), and 214Bi (609 keV) was used as a proxy for 226Ra activity and therefore the supported 210Pb that is produced in situ. The reported excess 210Pb (210Pbxs) is the difference of the total 210Pb and the supported 210Pb.

Myc Distant Enhancers Underlie Ovarian Cancer Susceptibility At The 8q24.21 Locus, Anxhela Gjyshi Gustafson

USF Tampa Graduate Theses and Dissertations

Ovarian cancer is a leading cause of death among women diagnosed with cancer. Mortality rate is high because an overwhelming majority of new cases are diagnosed with late-stage disease when the survival statistics are very poor with an overall 5-year survival rate of less than 40%. Despite the large burden of disease, the etiology of ovarian cancer is not well understood. In addition to linkage studies that have identified highly penetrant cancer susceptibility genes such as BRCA1 and BRCA2, the emergence of Genome Wide Association Studies (GWAS) in the last decade has facilitated the identification of common genetic variants with …

Future-Proofing The Cenozoic Macroperforate Planktonic Foraminifera Phylogeny Of Aze & Others (2011), Barry G. Fordham, Tracy Aze, Christian Haller, Abdullah K. Zehady, Paul N. Pearson, James G. Ogg, Bridget S. Wade

Marine Science Faculty Publications

The unique macroevolutionary dataset of Aze & others has been transferred onto the TimeScale Creator visualisation platform while, as much as practicable, preserving the original unrevised content of its morphospecies and lineage evolutionary trees. This is a “Corrected Version” (not a revision), which can serve as an on-going historical case example because it is now updatable with future time scales. Both macroevolutionary and biostratigraphic communities are now equipped with an enduring phylogenetic database of Cenozoic macroperforate planktonic foraminiferal morphospecies and lineages for which both graphics and content can be visualised together. Key to maintaining the currency of the trees has …

Epifaunal Foraminifera In An Infaunal World: Insights Into The Influence Of Heterogeneity On The Benthic Ecology Of Oxygen-Poor, Deep-Sea Habitats, Ryan A. Venturelli, Anthony E. Rathburn, Ashley M. Burkett, Wiebke Ziebis

Marine Science Faculty Publications

A reduction in dissolved oxygen availability in marine habitats is among the predicted consequences of increasing global temperatures. An understanding of past oxygenation is critical for predictions of future changes in the extent and distribution of oxygen minimum zones (OMZs). Benthic foraminifera have been used to assess changes in paleo-oxygenation, and according to prevailing thought, oxygen-poor marine benthic habitats are dominated by sediment-dwelling infaunal foraminifera, while more oxygenated environments are populated with more epifaunal taxa. However, in this study we found elevated densities of epifaunal taxa in oxygen-poor habitats. A series of 16 multicores were taken on depth transects (360–3000 …

Developing Community-Based Scientific Priorities And New Drilling Proposals In The Southern Indian And Southwestern Pacific Oceans, Robert Mckay, Neville Exon, Dietmar Müller, Karsten Gohl, Michael Gurnis, Amelia E. Shevenell, Stuart Henrys, Fumio Inagaki, Dhananjai Pandey, Jessica Whiteside

Marine Science Faculty Publications

An International Ocean Discovery Program (IODP) workshop was held at Sydney University, Australia, from 13 to 16 June 2017 and was attended by 97 scientists from 12 countries. The aim of the workshop was to investigate future drilling opportunities in the eastern Indian Ocean, southwestern Pacific Ocean, and the Indian and Pacific sectors of the Southern Ocean. The overlying regional sedimentary strata are underexplored relative to their Northern Hemisphere counterparts, and thus the role of the Southern Hemisphere in past global environmental change is poorly constrained. A total of 23 proposal ideas were discussed, with ∼ 12 of these deemed …

Salty Fertile Lakes: How Salinization And Eutrophication Alter The Structure Of Freshwater Communities, Lovisa Lind, Matthew S. Schuler, William D. Hintz, Aaron B. Stoler, Devin K. Jones, Brian M. Mattes, Rick A. Relyea

Integrative Biology Faculty and Staff Publications

The quality of freshwater ecosystems is decreasing worldwide because of anthropogenic activities. For example, nutrient over‐enrichment associated with agricultural, urban, and industrial development has led to an acceleration of primary production, or eutrophication. Additionally, in northern areas, deicing salts that are an evolutionary novel stressor to freshwater ecosystems have caused chloride levels of many freshwaters to exceed thresholds established for environmental protection. Even if excess nutrients and road deicing salts often contaminate freshwaters at the same time, the combined effects of eutrophication and salinization on freshwater communities are unknown. Thus by using outdoor mesocosms, we investigated the potentially interactive effects …

Spatial And Temporal Variability Of PCo2, Carbon Fluxes, And Saturation State On The West Florida Shelf, Lisa L. Robbins, Kendra L. Daly, L. Barbero, R. Wanninkhof, R. He, H. Zong, J. T. Lisle, W. J. Cai, C. G. Smith

Marine Science Faculty Publications

The West Florida Shelf (WFS) is a source of uncertainty for the Gulf of Mexico carbon budget. Data from the synthesis of approximately 135,000 pCO₂ values from 97 cruises from the WFS show that the shelf waters fluctuate between being a weak source to a weak sink of carbon. Overall, the shelf acts as a weak source of CO₂ at 0.32 ± 1.5 mol m⁻² yr⁻¹. Subregions, however, reveal slightly different trends, where surface waters associated with 40–200‐m isobath in the northern and southern WFS are generally weak sinks all year, except for summer …

Spatial And Temporal Variability Of PCo2, Carbon Fluxes, And Saturation State On The West Florida Shelf, L. L. Robbins, Kendra L. Daly, L. Barbero, R. Wanninkhof, R. He, H. Zong, J. T. Lisle, W. J. Cai, C. G. Smith

C-IMAGE Publications

The West Florida Shelf (WFS) is a source of uncertainty for the Gulf of Mexico carbon budget. Data from the synthesis of approximately 135,000 p CO₂ values from 97 cruises from the WFS show that the shelf waters fluctuate between being a weak source to a weak sink of carbon. Overall, the shelf acts as a weak source of CO₂ at 0.32 ± 1.5 mol m⁻² yr⁻¹. Subregions, however, reveal slightly different trends, where surface waters associated with 40–200‐m isobath in the northern and southern WFS are generally weak sinks all year, except for summer …

The Geotraces Intermediate Data Product 2017, Reiner Schlitzer, Robert F. Anderson, Elena Dodas, Maeve Lohan, Walter Geibert, Alessandro Tagliabue, Kristen N. Buck, Tim Conway, Stephen Galer, Ruifang Xie

Marine Science Faculty Publications

The GEOTRACES Intermediate Data Product 2017 (IDP2017) is the second publicly available data product of the international GEOTRACES programme, and contains data measured and quality controlled before the end of 2016. The IDP2017 includes data from the Atlantic, Pacific, Arctic, Southern and Indian oceans, with about twice the data volume of the previous IDP2014. For the first time, the IDP2017 contains data for a large suite of biogeochemical parameters as well as aerosol and rain data characterising atmospheric trace element and isotope (TEI) sources. The TEI data in the IDP2017 are quality controlled by careful assessment of intercalibration results and …

Characterizing Residence Patterns Of North Atlantic Right Whales In The Southeastern Usa With A Multistate Open Robust Design Model, A. M. Krzystan, T. A. Gowan, W. L. Kendall, J. Martin, J. G. Ortega-Ortiz, K. Jackson, A. R. Knowlton, P. Naessig, M. Zani, D. W. Schulte, C. R. Taylor

Marine Science Faculty Publications

Effective conservation of endangered North Atlantic right whales Eubalaena glacialis requires information about their spatio-temporal distribution. Understanding temporal distribution is particularly important, because a portion of the population migrates between high-latitude summer feeding grounds off the northeastern USA and Canadian Maritimes coasts and lower-latitude calving and wintering grounds off the southeastern US coast (SEUS). Here, we modeled SEUS residence patterns using photo-identification data from coastal South Carolina, Georgia, and Florida from 7 winter seasons (2004/2005-2010/2011). We used multistate open robust design models to evaluate effects of reproductive status, demographic group, and environmental conditions on SEUS residence. Model estimates accounted for …

Global Sea-Level Budget 1993–Present, Wcrp Global Sea Level Budget Group, Don P. Chambers, Gary T. Mitchum

Marine Science Faculty Publications

Global mean sea level is an integral of changes occurring in the climate system in response to unforced climate variability as well as natural and anthropogenic forcing factors. Its temporal evolution allows changes (e.g., acceleration) to be detected in one or more components. Study of the sea-level budget provides constraints on missing or poorly known contributions, such as the unsurveyed deep ocean or the still uncertain land water component. In the context of the World Climate Research Programme Grand Challenge entitled Regional Sea Level and Coastal Impacts, an international effort involving the sea-level community worldwide has been recently initiated with …

Numerical Modeling Of The Interactions Of Oil, Marine Snow, And Riverine Sediments In The Ocean, Anusha L. Dissanayake, Adrian B. Burd, Kendra L. Daly, Simone Francis, Uta Passow

Marine Science Faculty Publications

Natural or spilled oil in the ocean can interact with marine snow and sediment from riverine sources and form Marine Oil Snow (MOS) aggregates including aggregates consisting of phytoplankton, detritus, and feces. Such aggregates have a fractal structure and can transport oil from the surface layers to greater depths in the ocean, eventually settling on the seafloor. In recent studies of the Deepwater Horizon and IXTOC‐1 oil spills in the Gulf of Mexico, this process was identified as one of the main mechanisms for transporting oil vertically in the water column. We have adapted a stochastic, one‐dimensional numerical model that …

Challenges In Using Celltracker Green On Foraminifers That Host Algal Endosymbionts, Benjamin J. Ross, Pamela Hallock

Marine Science Faculty Publications

The uses of fluorescent microscopy and fluorescent probes, such as the metabolically activated probe CellTracker^TM Green CMFDA (CTG), have become common in studies of living Foraminifera. This metabolic requirement, as well as the relatively quick production of the fluorescent reaction products, makes CTG a prime candidate for determining mortality in bioassay and other laboratory experiments. Previous work with the foraminifer Amphistegina gibbosa, which hosts diatom endosymbionts, has shown that the species is capable of surviving both acute chemical exposure and extended periods of total darkness by entering a low-activity dormant state. This paper explores the use of CTG and …

Evolutionary History Of Plant Hosts And Fungal Symbionts Predicts The Strength Of Mycorrhizal Mutualism, Jason D. Hoeksema, James D. Bever, Sounak Chakraborty, V. Bala Chaudhary, Monique Gardes, Catherine A. Gehring, Miranda M. Hart, Elizabeth A. Housworth, Wittaya Kaonongbua, Marc J. Lajeunesse

Integrative Biology Faculty and Staff Publications

Most plants engage in symbioses with mycorrhizal fungi in soils and net consequences for plants vary widely from mutualism to parasitism. However, we lack a synthetic understanding of the evolutionary and ecological forces driving such variation for this or any other nutritional symbiosis. We used meta-analysis across 646 combinations of plants and fungi to show that evolutionary history explains substantially more variation in plant responses to mycorrhizal fungi than the ecological factors included in this study, such as nutrient fertilization and additional microbes. Evolutionary history also has a different influence on outcomes of ectomycorrhizal versus arbuscular mycorrhizal symbioses; the former …

Uncoupling The Folding And Binding Of An Intrinsically Disordered Protein, Anusha Poosapati, Emily Gregory, Wade M. Borcherds, Lucia B. Chemes, Gary Daughdrill

Molecular Biosciences Faculty Publications

The relationship between helical stability and binding affinity was examined for the intrinsically disordered transactivation domain of the myeloblastosis oncoprotein, c-Myb, and its ordered binding partner, KIX. A series of c-Myb mutants was designed to either increase or decrease helical stability without changing the binding interface with KIX. This included a complimentary series of A, G, P, and V mutants at three non-interacting sites. We were able to use the glycine mutants as a reference state and show a strong correlation between binding affinity and helical stability. The intrinsic helicity of c-Myb is 21%, and helicity values of the …

Airborne Bacteria In Earth's Lower Stratosphere Resemble Taxa Detected In The Troposphere: Results From A New Nasa Aircraft Bioaerosol Collector (Abc), David J. Smith, Jayamary D. Ravichandar, Sunit Jain, Dale W. Griffin, Hongbin Yu, Qian Tan, James Thissen, Terry Lusby, Patrick Nicoll, Sarah Shedler

Marine Science Faculty Publications

Airborne microorganisms in the upper troposphere and lower stratosphere remain elusive due to a lack of reliable sample collection systems. To address this problem, we designed, installed, and flight-validated a novel Aircraft Bioaerosol Collector (ABC) for NASA's C-20A that can make collections for microbiological research investigations up to altitudes of 13.7 km. Herein we report results from the first set of science flights—four consecutive missions flown over the United States (US) from 30 October to 2 November, 2017. To ascertain how the concentration of airborne bacteria changed across the tropopause, we collected air during aircraft Ascent/Descent (0.3 to …

Old And Recent Processes In A Warm And Humid Desert Hypogene Cave: ‘A’Rak Na‘Asane, Israel, Amos Frumkin, Shlomi Aharon, Uri Davidovich, Boaz Langford, Yoav Negev, Micka Ullman, Anton Vaks, Shemesh Ya‘Aran, Boaz Zissu

International Journal of Speleology

Recent environmental processes are studied in ʻA’rak Naʻasane Cave at the northern Judean Desert, Israel. The outer zone of the cave is heavily influenced by the outside environment through a large entrance, facilitating entry of air flow, fauna and humans, with minor cave-forming modifications. Conversely, the inner cave sustains humid and warm conditions, favoring modifications by condensation corrosion of convective air flow, associated with deposition of popcorn speleothems at the lower parts of dissolution pockets. The warm humid air of the inner cave may be associated with an underlying thermal water table. Active condensation corrosion is decreasing, possibly because of …

Validating The Accuracy Of Neatwork, A Rural Gravity Fed Water Distribution System Design Program, Using Field Data In The Comarca Ngöbe-Bugle, Panama, Maria Briones

USF Tampa Graduate Theses and Dissertations

Despite the sustainable development goals to increase access to improved water there are still 884 million people in the world without access to an improved water source (WHO, 2017). One method to improve access to water in rural, mountainous areas, is through construction of gravity fed water distribution systems. These systems should be designed based upon fundamental principles of hydraulics. One method of doing so in a time efficient manner with minimal engineering knowledge is to utilize a downloadable computer program such as Neatwork, which aids in design of rural, gravity fed water distribution systems and has been used by …

Catch Data From Fish Collected Throughout The Gulf Of Mexico From 2011 Until 2017, Steven A. Murawski

C-IMAGE data

This dataset represents collections taken by demersal longline fishing gears throughout the Gulf of Mexico from 2011 until 2017. They include station location information and standardized fish catch data (numbers, weights, sex, length). Catch data were classified into five sub-regions: West Florida Shelf (WFS), North Central (NC), North West (NW), South West (SW), Yucatan Peninsula (YP) and Cuba (CUB). Catch data were also classified into four species groups: Elasmobranch (EL), Other demersal (OD), Pelagic (LP) and Snapper/Grouper (SG). Data from 2011 until 2014 are also reported in C-IMAGE I dataset R1.x135.120:0002, Lesion data from fish collected off Terrebonne Bay, LA …

A Unique Small-Scale Microclimatic Gradient In A Temperate Karst Harbours Exceptionally High Diversity Of Soil Collembola, Natália Raschmanová, Dana Miklisová, Ľubomír Kováč

International Journal of Speleology

The collapse doline of the Silická ľadnica Ice Cave, 351 m² in area, is a unique phenomenon, a steep microclimate gradient in a low-altitude temperate karst in the Western Carpathian Mts, Slovakia, with a remarkable temperature decrease from the edge of karst plateau towards the doline bottom, which harbours perennial ice deposits. Collembola communities were studied in detail at seven sites along the 117.5 m long gradient slope during 2005–2007. An exceptionally high species richness of soil Collembola was observed, 129 species, which is about 91% of the total species richness generated by Chao1/ACE estimator. Species richness positively correlated …

The Influence Of Pressure On Crude Oil Biodegradation In Shallow And Deep Gulf Of Mexico Sediments, Uyen T. Nguyen, Sara A. Lincoln, Ana Gabriela Valladares Juárez, Martina Schedler, Jennifer L. Macalady, Rudolf Müller, Katherine H. Freeman

C-IMAGE Publications

A significant portion of oil released during the Deepwater Horizon disaster reached the Gulf of Mexico (GOM) seafloor. Predicting the long-term fate of this oil is hindered by a lack of data about the combined influences of pressure, temperature, and sediment composition on microbial hydrocarbon remineralization in deep-sea sediments. To investigate crude oil biodegradation by native GOM microbial communities, we incubated core-top sediments from 13 GOM sites at water depths from 60–1500 m with crude oil under simulated aerobic seafloor conditions. Biodegradation occurred in all samples and followed a predictable compound class sequence dictated by molecular weight and structure. 45 …