Life Sciences Commons^™

Architectural Complexity Of Oyster Reefs: Evaluating The Relationship Between Interstitial Spaces And Macroinvertebrates, Elizabeth A. Salewski

USF Tampa Graduate Theses and Dissertations

Understanding how organisms utilize and interact with habitat features may improve predictions of habitat preferences and species interactions, and may assist in the development of conservation and management strategies. The architecture of a habitat provides a complex array of structural features that influences interactions between the abiotic and biotic factors, and impact the biodiversity and species abundance through altering recruitment patterns and the survival of associated fauna. Characterizing potential refugia however has been challenging with minimal attempts to measure interstitial space size and abundance in reef systems. Here, I present novel methodology utilizing 3D technology to characterize interstitial spaces within …

Bacteria, Guano And Soot: Source Assessment Of Organic Matter Preserved In Black Laminae In Stalagmites From Caves Of The Sierra De Atapuerca (N Spain), Joeri Kaal, Virginia Martínez-Pillado, Antonio Martínez Cortizas, Jorge Sanjurjo Sánchez, Arantza Aranburu, Juan-Luis Arsuaga, Eneko Iriarte

International Journal of Speleology

Speleothems are a recognized source of paleoclimatic information, but their value as a source of signals from human activities in caves with an archaeological record has rarely been explored. Previous studies of speleothems in the Sierra de Atapuerca karst system (Burgos, northern Spain) revealed an important human fossil record, provided information about human activities in and around these caves, and the impacts on their natural environment. The present study reports the results of molecular characterization of dark-colored laminae from the stalagmites Ilargi (Galería de las Estatuas) and GS1, GS2, and GS3 (Galería del Silo), by pyrolysis-GC-MS (Py-GC-MS) and …

Hyperoxia-Induced Cardiac Pathophysiology In Guinea Pig Hearts, Zain Ul Abidin

USF Tampa Graduate Theses and Dissertations

Hyperoxia, is regularly introduced to critically ill patients in ICU. Nevertheless, recent studies have shown the negative effects of this treatment on patients in critical care, including increased rates of lung and cardiac injury and thereby high in-hospital mortality. Large part of the literature related to hyperoxia was majorly focused on lung injury, with no or minimal investigations on cardiac injury. Our lab is the first to investigate the effect of hyperoxia on cardiac pathophysiology in mice and showed that mice exposed to hyperoxia for 3 days demonstrated brady-arrhythmia, cardiac hypertrophy, QTc prolongation along with other electrical remodeling and functional …

Ecophysiological Responses Of Two Closely Related Epigean And Hypogean Niphargus Species To Hypoxia And Increased Temperature: Do They Differ?, Tatjana Simčič, Boris Sket

International Journal of Speleology

Ecological performance of animals depends on physiological and biochemical processes that are adjusted to the environment. The responses to hypoxia or anoxia have been frequently studied in subterranean aquatic organisms in order to find potential adaptations to restrict oxygen conditions occurring in the underground habitats. However, some previous studies have compared phylogenetic distant epigean and hypogean species or the epigean and hypogean populations of the same species due to little chance to compare closely related epigean and hypogean species. Therefore, in this study, we compared the effects of exposure to hypoxia, followed by reoxygenation, and increased temperature on oxygen consumption, …

An Automated Framework For Connected Speech Evaluation Of Neurodegenerative Disease: A Case Study In Parkinson's Disease, Sai Bharadwaj Appakaya

USF Tampa Graduate Theses and Dissertations

Neurodegenerative diseases affect millions of people around the world. The progressive degeneration worsens the symptoms, heavily impacting the quality of life of the patients as well as the caregivers. Speech production is one of the physiological processes affected by neurodegenerative diseases like Alzheimer’s disease, amyotrophic lateral sclerosis (ALS) and Parkinson’s disease (PD). Speech is the most basic form of communication, and the effect of neurodegeneration degrades speech production, thereby reducing social interaction and mental well-being. PD is the second most common neurodegenerative disease affecting speech production in 90% of the diagnosed individuals. Speech analysis methods for PD in clinical methods …

A Macro Analysis Of Illegal Hunting And Fishing Across Texas Counties: Using An Economic Structural Approach, Leo J. Genco Jr.

USF Tampa Graduate Theses and Dissertations

The purpose of this disseration is to examine the distribution of illegal hunting and fishing violations across Texas counties in respect to the economic structure. Illegal hunting plays a part in the extraction of resources that are overly withdrawn, and criminologists have ignored this form of deviancy that has large ramifications for the environment. To view this criminal phenomenon, the study uses the Treadmill of Production theory to determine economic structural factors and whether those factors explain the distribution of illegal hunting and fishing. Using regression analyses and SatScan, the findings suggested that while there are significant factors related to …

Epigenetic Potential In An Introduced Passerine, Haley E. Hanson

USF Tampa Graduate Theses and Dissertations

Epigenetic modifications play a critical role in numerous processes throughout the lifetime of an organism by influencing gene regulation. Responsive to both endogenous cues and external stimuli, epigenetic modifications are key mechanisms underlying phenotypic plasticity. Epigenetic potential, or the capacity for phenotypic plasticity mediated by epigenetic modifications, can be encoded within the genome via genetic variation underlying aspects of epigenetic modifications. For example, one type of epigenetic modification, DNA methylation, predominately occurs at CpG motifs in vertebrates. The number of CpG sites within the genome then represents the capacity for DNA methylation to occur and is one form of epigenetic …

Mechanisms And Mitigation: Effects Of Light Pollution On West Nile Virus Dynamics, Meredith E. Kernbach

USF Tampa Graduate Theses and Dissertations

Light pollution, or the presence of unnatural light at night, is a pervasive and growing problem across the globe. While often pictured in urban centers, light pollution is far reaching and can affect seemingly safe and minimally developed environments. For example, agricultural communities with artificial lighting near facilities can generate such light pollution in rural areas. Further, streetlights and illuminated billboards along roads and highways can generate light pollution far from cities. Given how pervasive this anthropogenic stressor is, it is surprising that not much is known about how artificial light at night, or ALAN, affects humans or wildlife, especially …

Investigating The Novel Role Of Dextromethorphan In Mitigating Oxidative Stress Induced Changes In Retinal Pigment Epithelial Cells (Rpe), Zeinab A. Mohamed

USF Tampa Graduate Theses and Dissertations

Oxidative stress contributes to the degeneration of retinal pigment epithelial (RPE) cells and photoreceptors that lead to the dry form of age-related macular degeneration. Activation of N-Methyl-D-aspartate (NMDA) receptors contributes to the increase of free radicals that induce oxidative stress-induced changes. Our study investigates if Dextromethorphan, an NMDA receptor antagonist, reverses oxidative stress-induced changes in RPE. We used Paraquat and H2O2 as oxidative stress-inducing agents to induce oxidative damage in human ARPE-19 cells. To illustrate the change in cell viability and measure the apoptosis of ARPE-19 cells from oxidative damage, we performed MTT assay and Annexin V-DAPI flow cytometry analysis. …

Warming Up And Cooling Down: Perceptions And Behaviors Associated With Aerobic Exercise, Balea J. Schumacher

USF Tampa Graduate Theses and Dissertations

This study investigated the perceptual and behavioral responses regarding the use of warm-ups and cool-downs in aerobically active adults. There were 79 individuals who volunteered to participate in this study. Respondents were recruited by word of mouth or through social media and the Qualtrics survey link/QR code was on all recruitment materials in order to access the survey. The survey consisted of 47 questions. This study aimed to determine whether age, sex, or exercise location impacted perception or behavior related to warm-up and/or cool- down activities before or after the aerobic training exercise sessions. Primary results indicated the following: 1) …

The Perceived Utility Of Direct-To-Consumer Genetic Testing Marketed For Athletic Ability, Katherine L. Zimmerman

USF Tampa Graduate Theses and Dissertations

Factors that influence the public’s interest in pursuing genetic testing to determine athletic ability are not yet known. The purpose of this study is to compare interest in genetic testing marketed for athletic ability and susceptibility to sports-related injuries among athletes and the general public. Additionally, this study aims to determine if genetic determinism, knowledge and elements of perceived utility influence their overall intention to use the results of such genetic testing. Participants were recruited through social media platforms to complete an online survey measuring their intention to pursue testing under various circumstances, intention to use the results to change …

Defining Codes Based On The Consolidated Framework For Implementation Research In The Context Of The Implementing Universal Lynch Syndrome Screening, Jasmine A. Burton-Akright

USF Tampa Graduate Theses and Dissertations

Lynch syndrome (LS) is the most common hereditary cause of both colorectal cancer (CRC) and endometrial cancer (EC). Universal tumor screening (UTS) of newly diagnosed EC and CRC patients has been shown to be both an effective and economical approach to identify patients with LS and subsequently reduce future cancer s for patients and their family members. Despite its efficacy, LS UTS has not been consistently adopted across hospital systems and existing programs vary widely in their structure and execution. The Implementing Universal Lynch Syndrome Screening (IMPULSS) study aims to determine the critical factors necessary for successful implementation of LS …

Novel Educational Material For Patients With A Variant Of Uncertain Significance (Vus) In A Cancer Risk Gene, Meghan E. Kelley

USF Tampa Graduate Theses and Dissertations

The number of individuals being tested for hereditary cancer syndromes has greatly increased in the last several years and many people receive Variants of Uncertain Significance (VUS) as a test result. Although VUS results should not guide medical management, patients and even some healthcare providers continue to use a VUS to alter or receive unnecessary medical care.

We conducted a needs assessment via literature review and analyzed VUS patient interviews from a previous study with the goal of identifying various themes that could help determine content, layout, and messaging to incorporate into online educational materials. The needs assessment found few …

Evaluation Of A Spanish-Language Educational Tool For Inherited Cancer, Stefania Alastre

USF Tampa Graduate Theses and Dissertations

A web-based educational tool designed to cover pre-test genetic counseling elements for multi-gene hereditary cancer panel testing increased knowledge and decisional empowerment among an English-speaking cohort actively seeking information about genetic testing. The purpose of this study was to pilot a Spanish-language version of this tool using a pre- post- survey design to assess for changes in knowledge and informed decision making about genetic testing and obtain additional feedback using semi-structured interviews. Spanish-speaking individuals were recruited online. Although several participants expressed that the tool was informative, interesting, and that they liked it, time stamps for the post-survey suggested that most …

Drug Candidates Targeting Hsp90/Cdc37 For The Treatment Of Neurodegenerative Disease, Ryan Martin

USF Tampa Graduate Theses and Dissertations

Neurodegenerative disease refers to the death of specific populations of neurons that canresult in dementia, loss of voluntary muscle motility, and other abnormalities. Two major neurodegenerative diseases are Alzheimer’s disease (AD) and Parkinson’s disease (PD), which are linked to abnormalities in Tau and a-synuclein proteins, respectively. Currently, there is no cure for these diseases. Our group and others have shown that chaperone proteins play a critical role in the processing of Tau and a-synuclein. The inhibition of the Hsp90/Cdc37 chaperone complex is shown to affect the levels of these two proteins. Hence, we hypothesized that a drug molecule, conglobatin (Cb), …

Americans’ Familiarity, Interest, And Actions With Direct-To-Consumer Genetic Testing, Riley L. Carroll

USF Tampa Graduate Theses and Dissertations

Background: In 2013, 36% of the U.S. public was aware of Direct-to-Consumer (DTC) genetic tests, but updated studies are needed to identify whether this has changed over time. Objective: The aims are to determine current awareness and utilization of DTC tests and to identify demographic factors that influence testing uptake. Methods: An online panel survey of 543 U.S. adults was conducted using age- and sex-based quotas. Descriptive statistics and binary regression identified factors associated with undergoing DTC testing and linear regression was conducted to identify factors associated with likelihood of using DTC testing for athletic ability to …

Nest Site Choice As A Potential Climate Response In The Gopher Tortoise (Gopherus Polyphemus), A Threatened Species, Meghan Craft

USF Tampa Graduate Theses and Dissertations

Climate warming is expected to continue in coming decades, posing a threat to species worldwide. While some species may be able to shift their ranges in the pursuit of cooler temperatures, a large portion of species may have to find ways to adapt to warmer conditions in situ. Oviparous reptiles may be able to buffer against rising temperatures by altering nest site choice. In this study, I quantified nest site choice and its thermal consequences in a population of the gopher tortoise (Gopherus polyphemus) in southwestern Florida. I found marked variation in the openness of selected nest sites, …

Quantifying The Gametogenic Cycle And Reproductive Efforts In The Eastern Oyster (Crassostrea Virginica) In Florida Estuaries, Nicole Patrice Maloney

USF Tampa Graduate Theses and Dissertations

Oyster populations from six estuaries in Florida were sampled monthly from January to December of 2018 for reproduction and health analysis. Sites were located in Apalachicola Bay, Caloosahatchee River estuary, Lake Worth lagoon, Loxahatchee River estuary, St. Lucie estuary, and Tampa Bay. Oysters monitored for analysis in South Florida (Loxahatchee River estuary, St. Lucie estuary, and Caloosahatchee River estuary) were chosen as they are a part of a monitoring component of the Comprehensive Everglades Restoration Plan. These estuaries are highly influenced by freshwater input from Lake Okeechobee and other river basins. Like the South Florida sites Apalachicola Bay is also …

Protura (Arthropoda: Hexapoda) In Slovenian Caves, Loris Galli, Franc Janžekovič, Peter Kozel, Tone Novak

International Journal of Speleology

Protura is a small class of Hexapoda, generally poorly known, and rather scarce data on its occurrence in caves are scattered throughout literature on fauna in caves and in some papers on Protura. Although the cave-dwelling fauna is relatively well studied in Slovenia, published records on Protura are rare. In this paper, data on the occurrence and abundance of Protura in Slovenian caves are considered. Various statistical analyses were performed to compare caves with Protura to those without in 60 intensively monitored cavities to detect any differences in the selected environmental conditions. No significant difference was obtained. Samples collected from …

Glutathione-S-Transferase Mu 1 (Gstm1) Gene Augmentation Attenuated Oxidative Stress Induced Changes In Retinal Pigment Epithelium Cells (Rpe), Riddhi Sandeep Vichare

USF Tampa Graduate Theses and Dissertations

Purpose: Loss of Retinal Pigment Epithelial (RPE) cells and photoreceptors leads to Age-related macular degeneration (AMD), one of the leading causes of blindness in the elderly worldwide. Oxidative stress-mediated damage is one of the factors that impair the survival of RPE and photoreceptors in dry-AMD. We sought to determine the role of human Glutathione S-Transferase Mu-1 (GSTM1) in protecting RPE cells from oxidative stress-induced changes.

Method: We cloned human GSTM1 cDNA with P2A tag into a lenti-plasmid vector and later made a lentivector to express GSTM1. After that, we infected human retinal pigment epithelial cells (ARPE-19), screened stable ARPE-19 cells …

The Distribution In Native Populations From Mexico And Central America Of The C677t Variant In The Mthfr Gene, Lucio A. Reyes

USF Tampa Graduate Theses and Dissertations

Objectives: To explore evolutionary hypotheses for the high frequencies of a substitution in the methylenetetrahydrofolate reductase (MTHFR) gene, in Mexican and Central American Indigenous populations.

Materials and methods: We obtained allele frequencies for the C677T variant in the MTHFR gene and ecological information for 37 indigenous samples from Mexico and Central America. We calculated Hardy–Weinberg equilibrium and computed Fst statistics. We computed correlations between the samples' allele frequencies and ecological and geochemical variables.

Results: Many of the samples have extremely high frequencies of the T allele (q̄ = 0.62, median = 0.66). In this region, the frequency of the T …

Effect Of Temperature On Growth And Gene Expression In The Marine Diatom, Thalassiosira Pseudonana, John M. Foster

USF Tampa Graduate Theses and Dissertations

Diatoms are unicellular, eukaryotic, photosynthetic algae responsible for the production of 20% of our atmospheric oxygen. Diatoms contribute to several important biogeochemical functions. Diatoms contribute to the carbon cycle, sequestering carbon and forming oxygen as a product of photosynthesis. Moreover, by converting abiotic forms of energy such as sunlight into organic compounds (i.e., sugars, starches and lipids), primary producers including diatoms, plants, and phytoplankton feed organisms at higher trophic levels. Consequently, changes in temperature, light intensity, nutrients, salinity and other stress factors that affect primary producers can generate a potentially catastrophic ripple effect at higher trophic levels In this study …

Microhabitat Selection Of A Sicilian Subterranean Woodlouse And Its Implications For Cave Management, Giuseppe Nicolosi, Stefano Mammola, Salvatore Costanzo, Giorgio Sabella, Rosolino Cirrincione, Giovanni Signorello, Marco Isaia

International Journal of Speleology

Human activities in subterranean environments can affect different ecosystem components, including the resident fauna. Subterranean terrestrial invertebrates are particularly sensitive to environmental change, especially microclimatic variations. For instance, microclimate modifications caused by the visitors may directly affect local fauna in caves opened to the public. However, since numerous factors act synergistically in modulating the distribution and abundance of subterranean species, it remains challenging to differentiate the impact of human intervention from that of other factors. Therefore, evidence of the impact of tourism on cave invertebrate fauna remains scarce. Over a year and with approximately two visits a month, we investigated …

Microbiological Study In A Gneissic Cave From Sri Lanka, With Special Focus On Potential Antimicrobial Activities, Ethige Isuru P. Silva, Pathmakumara Jayasingha, Saman Senanayake, Anura Dandeniya, Dona Helani Munasinghe

International Journal of Speleology

The emergence of antibiotic resistance is a global health crisis, thus the search for novel antimicrobial compounds has become a continuous necessity. Underexplored and extreme environments, such as cave ecosystems, have been identified as a promising potential source for the discovery of novel microorganisms with novel antimicrobial compounds (AMC). This study presents the first cave microbiological investigation in Sri Lanka, with a special preference for bioprospecting of novel AMC. The cave sediment characterization demonstrated the presence of close to strong acidic conditions (pH 3.1 – 3.3) and thus indicates the possibility of isolating acidophilic microorganisms. Eight cave wall/ceiling fungal strains …

Shorebird Response To Human-Induced Changes At Three Pinellas County Beaches, Rebecca J. Ruthberg-Campagna

USF Tampa Graduate Theses and Dissertations

Worldwide, shorebird habitat is being destroyed and degraded by development and sea level rise. Shorebirds depend on availability of pristine, undisturbed coastal habitats for resting and feeding during migration as well as for reproduction. Migratory shorebirds using the East Atlantic Flyway visit the Gulf of Mexico Beaches of Pinellas County, Florida as a stopover site during Fall and Spring migration. In addition to hosting migratory species, Pinellas County beaches are home to several year-round resident species that breed during Summer. Pinellas County is the most densely populated county in Florida, and its Gulf Coast is heavily developed with commercial and …

The Impact Of Bahiagrass (Paspalum Notatum) On Florida Sand Skink (Plestiodon Reynoldsi) Movements, Chandler A. R. Eaglestone

USF Tampa Graduate Theses and Dissertations

The Florida Sand Skink (Plestiodon reynoldsi) is a federally threatened lizard precinctive to scrub habitat, a pyrogenic habitat that experiences fires infrequently. Plestiodon reynoldsi spends most of its time right under the sand surface, moving, or “sand swimming,” through the granular substrate found in Florida’s central ridges. While the distribution of this species has been greatly reduced, agricultural development of P. reynoldsi habitat has led to potentially suitable fragmented scrub occurring near bahiagrass (Paspalum notatum) pastures. Bahiagrass is widely used as a pasture grass in sandy soils of the southeast United States, because of its deep …

Novel Co2 Transporters From Autotrophic Bacteria From Extreme Environments, Sarah E. Schmid

USF Tampa Graduate Theses and Dissertations

Autotrophic organisms are responsible for introducing carbon into food webs. These organisms take up dissolved inorganic carbon (DIC) and use it as their major carbon source, converting it to biomass using a variety of carbon fixing pathways (e.g., the Calvin-Benson-Bassham cycle). In nature, DIC concentrations can be low or temporally heterogeneous, so autotrophic organisms adapt with CO2 concentrating mechanisms (CCMs) to facilitate the acquisition and fixation of this dissolved gas. CCMs consist of membrane-spanning DIC transporters, which elevate intracellular DIC concentrations, which in turn are harvested by carboxysomes, proteinaceous microcompartments that contain the carboxylase Ribulose-1,5-bisphosphate carboxylase-oxygenase (RubisCO) and carbonic anhydrase. …

Bone Microenvironmental Control Of Skeletal Malignancy, Chen Hao Lo

USF Tampa Graduate Theses and Dissertations

Bone is a common site of metastasis for many solid malignancies. Bone-metastatic cancers pose a significant clinical problem worldwide and is among the main causes for cancer patient morbidity and mortality. Patients with advanced bone-metastatic diseases often present with either osteolytic or osteogenic bone diseases as their cancers progress. These bone pathologies are products of the cancer co-opting the local bone remodeling stroma to yield important growth nutrients and factors. Unfortunately, skeletal metastases remain incurable and are fatal. Identifying and understanding the causal multicellular and molecular interactions underlying skeletal malignancies can yield crucial ideas for targeting and inhibiting disease progression. …

Constraining Southern Ocean Co2 Flux Uncertainty Using Uncrewed Surface Vehicle Observations, A. J. Sutton, Nancy L. Williams, B. Tilbrook

Marine Science Faculty Publications

Remote, harsh conditions of the Southern Ocean challenge our ability to observe the region’s influence on the climate system. Southern Ocean air-sea CO2 flux estimates have significant uncertainty due to the reliance on limited ship-dependent observations in combination with satellite-based and interpolated data products. We utilize a new approach, making direct measurements of air-sea CO2, wind speed, and surface ocean properties on an Uncrewed Surface Vehicle (USV). In 2019, the USV completed the first autonomous circumnavigation of Antarctica providing hourly CO2 flux estimates. Using this unique data set to constrain potential error in different measurements and propagate those through the …

Increased Cave Use By Butterflies And Moths: A Response To Climate Warming?, Otto Moog, Erhard Christian, Rudolf Eis

International Journal of Speleology

Between 2015 and 2019, the list of Lepidoptera from “cave” habitats (i.e., proper caves, rock shelters and artificial subterranean structures) in Austria grew from 17 to 62 species, although the effort of data collection remained nearly constant from the late 1970s onwards. The newly recorded moths and butterflies were resting in caves during daytime in the the warm season, three species were also overwintering there. We observed Catocala elocata at 28 cave inspections, followed by Mormo maura (18), Catocala nupta (7), Peribatodes rhomboidaria, and Euplagia quadripunctaria (6). More than half of the species have been repeatedly observed in caves …