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Articles 1291 - 1320 of 2279

Full-Text Articles in Life Sciences

Dataset For: Simulating Cell Death In The Termination Of Karenia Brevis Blooms: Implications For Predicting Aerosol Toxicity Vectors To Humans, Jason M. Lenes Mar 2016

Dataset For: Simulating Cell Death In The Termination Of Karenia Brevis Blooms: Implications For Predicting Aerosol Toxicity Vectors To Humans, Jason M. Lenes

C-IMAGE data

A non-linear lysis term for simulation of K. brevis HAB termination on the West Florida Shelf is introduced, with the assumption that particle encounters of planktonic microalgae and bacteria can be described as the square of the phytoplankton biomass. This formulation also accounts for nutrient-limitation of K. brevis as a precondition for susceptibility to bacterial and viral attack, and potentially programmed cell death. Two model simulations were run of linear and non-linear lysis cases. Model output was compared against observed weekly maximum K. brevis concentrations, with statistical metrics calculated over three HAB phases during 2001. Introduction of the non-linear lysis …

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Golden Tilefish Tissue And Eye-Lens Stable Isotopes And C:N Ratios From The Gulf Of Mexico, Summer 2013, Jenny Fenton Ostroff Mar 2016

Golden Tilefish Tissue And Eye-Lens Stable Isotopes And C:N Ratios From The Gulf Of Mexico, Summer 2013, Jenny Fenton Ostroff

C-IMAGE data

Stable isotope and C:N ratio data were analyzed for muscle, liver, heart, brain, blood, spleen and separated eye lens layers of golden tilefish.

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Satellite, Glider Data, And Field Measurements To Study Harmful Algae On The West Florida Shelf During 2011 And 2012, Chuanmin Hu Mar 2016

Satellite, Glider Data, And Field Measurements To Study Harmful Algae On The West Florida Shelf During 2011 And 2012, Chuanmin Hu

C-IMAGE data

Satellite Oceanography is a sub-task under Task 4. It relies primarily on satellite-collected data, processed using either NASA standard algorithms or customized algorithms to produce data and imagery products specifically tailored for this project.

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Predator-Prey Diet Linkages With Error Range For The Gulf Of Mexico Fitted Using Maximum Likelihood Method, Cameron H. Ainsworth Mar 2016

Predator-Prey Diet Linkages With Error Range For The Gulf Of Mexico Fitted Using Maximum Likelihood Method, Cameron H. Ainsworth

C-IMAGE data

Data is from Masi, M and Ainsworth, C. (in press) A Probabilistic Representation of Fish Diet Compositions from Multiple Data Sources: A Gulf of Mexico Case Study. Ecological Modelling. April 2014. Trophic ecosystem models are interactive tools that allow decision makers to analyze how a management decision can impact an ecosystem on a multi-species level, and are increasingly being used as a supplement to the current single species approach to fisheries management. The functionality of such a model is dependent upon an accurate representation of the trophic interactions occurring within a study area. Typical methods for developing a diet matrix …

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Characterization Of Bacterial Diversity In Cold-Water Anthothelidae Corals, Stephanie Nichole Lawler Mar 2016

Characterization Of Bacterial Diversity In Cold-Water Anthothelidae Corals, Stephanie Nichole Lawler

USF Tampa Graduate Theses and Dissertations

Cold-water corals, similar to tropical corals, contain a diverse and complex microbial landscape. Comprised of vital microscopic organisms (i.e. bacteria, viruses, archaea), the coral microbiome is a driving factor in the proliferation and survival of the coral host. Bacteria provide essential biological functions within coral holobionts, facilitating increased nutrient utilization and production of antimicrobial compounds. To date, few cold-water octocoral species have been analyzed to explore the diversity and abundance of their microbial associates. For this study, 23 samples of the family Anthothelidae were collected from Norfolk (n = 12) and Baltimore Canyons (n = 11) from the western Atlantic …

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Hydrocarbons In Deep-Sea Sediments Following The 2010 Deepwater Horizon Oil Spill In The Northeast Gulf Of Mexico, Isabel Romero Mar 2016

Hydrocarbons In Deep-Sea Sediments Following The 2010 Deepwater Horizon Oil Spill In The Northeast Gulf Of Mexico, Isabel Romero

C-IMAGE data

High-resolution analyses of sediment cores collected in the aftermath of the Deepwater Horizon (DWH) were conducted to reconstruct the concentration, composition and flux of hydrocarbons to deep-sea (pre-2010, 2010, and 2011) in the DeSoto Canyon, Northeast Gulf of Mexico. Specifically, we analyzed total organic carbon (TOC), aliphatic, polycyclic aromatic hydrocarbon (PAHs), and short-lived radionuclide (234Th, 210Pb) compounds at 2 mm and 5 mm core intervals to elucidate possible hydrocarbon sources and transport pathways to sediments during the time covered in this study. Results showed higher TOC, total aliphatics and PAH fluxes after the DWH blowout (2010-2011) compared to pre-2010 years …

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Zooplankton Abundance And Distribution Data For The Northeastern Gulf Of Mexico And West Florida Shelf: June 2012 – August 2014, Kendra L. Daly Mar 2016

Zooplankton Abundance And Distribution Data For The Northeastern Gulf Of Mexico And West Florida Shelf: June 2012 – August 2014, Kendra L. Daly

C-IMAGE data

This dataset contains seasonal and interannual zooplankton abundance collected from the northeastern Gulf of Mexico and the west Florida shelf. The purpose of this dataset is to assess the seasonal and interannual changes in zooplankton abundance after the Deepwater Horizon oil spill.

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Metabolic Therapy For Age-Dependent Impaired Wound Healing, Shannon Lynn Kesl Mar 2016

Metabolic Therapy For Age-Dependent Impaired Wound Healing, Shannon Lynn Kesl

USF Tampa Graduate Theses and Dissertations

Chronic wounds represent an under-acknowledged socioeconomic epidemic, affecting 1.8 million new patients per year and costing the US health care system upwards of $25 billion annually. This substantial cost is rapidly growing due to a disproportionate occurrence in the ever-aging population. Key features associated with age-related impairment of wound healing include limited energy and nutrient exchange, unremitting inflammations, increased reactive oxygen species (ROS), and diminished blood flow. Most chronic wound therapies target specific molecular mechanisms; however, there are often multiple mitigating factors that prevent normal wound closure. This is likely one reason most wound therapies are minimally effective. In the …

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Three-Dimensional Interstitial Space Mediates Predator Foraging Success In Different Spatial Arrangements, Stephen Gregory Hesterberg Mar 2016

Three-Dimensional Interstitial Space Mediates Predator Foraging Success In Different Spatial Arrangements, Stephen Gregory Hesterberg

USF Tampa Graduate Theses and Dissertations

Habitat structure modifies the strength of predator-prey interactions, but it remains unclear how to describe the three-dimensional spatial arrangement of structural components in a way that consistently predicts outcomes. Interstitial space may provide a useful target for measurement, but most studies use only two-dimensional methods to describe 3D space, limiting their predictive power. Using a novel technology to produce identical components, this study tests whether the 3D interstitial space of oyster shell mimics modifies the ability of blue crabs (Callinectes sapidus) to capture their mud crab prey (Eurypanopeous depressus) in mesocosms and a variety of reef-associated …

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Combined Effects Of Pesticides And Trematode Infections On Hourglass Tree Frog Polypedates Cruciger., Uthpala A. Jayawardena, Jason R. Rohr, Ayanthi N. Navaratne, Priyanie H. Amerasinghe, Rupika S. Rajakaruna Mar 2016

Combined Effects Of Pesticides And Trematode Infections On Hourglass Tree Frog Polypedates Cruciger., Uthpala A. Jayawardena, Jason R. Rohr, Ayanthi N. Navaratne, Priyanie H. Amerasinghe, Rupika S. Rajakaruna

Integrative Biology Faculty and Staff Publications

The impact of widespread and common environmental factors, such as chemical contaminants, on infectious disease risk in amphibians is particularly important because both chemical contaminants and infectious disease have been implicated in worldwide amphibian declines. Here we report on the lone and combined effects of exposure to parasitic cercariae (larval stage) of the digenetic trematode, Acanthostomum burminis, and four commonly used pesticides (insecticides: chlorpyrifos, dimethoate; herbicides: glyphosate, propanil) at ecologically relevant concentrations on the survival, growth, and development of the common hourglass tree frog, Polypedates cruciger Blyth 1852. There was no evidence of any pesticide-induced mortality on cercariae because all …

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Assessing The Impacts Of Oil-Associated Marine Snow Formation And Sedimentation During And After The Deepwater Horizon Oil Spill, Kendra L. Daly, Uta Passow, Jeffrey Chanton, David Hollander Mar 2016

Assessing The Impacts Of Oil-Associated Marine Snow Formation And Sedimentation During And After The Deepwater Horizon Oil Spill, Kendra L. Daly, Uta Passow, Jeffrey Chanton, David Hollander

Marine Science Faculty Publications

The Deepwater Horizon oil spill was the largest in US history, unprecedented for the depth and volume of oil released, the amount of dispersants applied, and the unexpected, protracted sedimentation of oil-associated marine snow (MOS) to the seafloor. Marine snow formation, incorporation of oil, and subsequent gravitational settling to the seafloor (i.e., MOSSFA: Marine Oil Snow Sedimentation and Flocculent Accumulation) was a significant pathway for the distribution and fate of oil, accounting for as much as 14% of the total oil released. Long residence times of oil on the seafloor will result in prolonged exposure by benthic organisms and economically …

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Decadal Variability In The Oxygen Inventory Of North Atlantic Subtropical Underwater Captured By Sustained, Long-Term Oceanographic Time Series Observations, Enrique Montes, Frank E. Muller-Karger, Andrés Cianca, Michael W. Lomas, Laura Lorenzoni, Sennai Habtes Mar 2016

Decadal Variability In The Oxygen Inventory Of North Atlantic Subtropical Underwater Captured By Sustained, Long-Term Oceanographic Time Series Observations, Enrique Montes, Frank E. Muller-Karger, Andrés Cianca, Michael W. Lomas, Laura Lorenzoni, Sennai Habtes

Marine Science Faculty Publications

Historical observations of potential temperature (θ), salinity (S), and dissolved oxygen concentrations (O2) in the tropical and subtropical North Atlantic (0–500 m; 0–40°N, 10–90°W) were examined to understand decadal‐scale changes in O2 in subtropical underwater (STUW). STUW is observed at four of the longest, sustained ocean biogeochemical and ecological time series stations, namely, the CArbon Retention In A Colored Ocean (CARIACO) Ocean Time Series Program (10.5°N, 64.7°W), the Bermuda Atlantic Time‐series Study (BATS; 31.7°N, 64.2°W), Hydrostation “S” (32.1°N, 64.4°W), and the European Station for Time‐series in the Ocean, Canary Islands (ESTOC; 29.2°N, 15.5°W). …

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Chemical Investigation Of Antarctic Marine Organisms & Their Role In Modern Drug Discovery, Jacqueline Lee Fries Feb 2016

Chemical Investigation Of Antarctic Marine Organisms & Their Role In Modern Drug Discovery, Jacqueline Lee Fries

USF Tampa Graduate Theses and Dissertations

The chemicals produced by biological systems, whether proteins, peptides, or terpenes, will always provide an intriguing topic for researchers. Invisibly controlling every aspect of nature, these molecules are responsible for life, evolution, and death. Specifically, here is described the secondary metabolites produced by Antarctic marine organisms as well as others, and how they are used to defend or attract other animals while potentially providing health benefits to mankind. This is done through collection, extraction, and separation of individual specimens. The respective mixtures of compounds after isolation are then analyzed via spectroscopic methods such as nuclear magnetic resonance spectroscopy, mass spectrometry, …

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Synchronicity Between Ice Retreat And Phytoplankton Bloom In Circum‐Antarctic Polynyas, Yun Li, Rubao Ji, Meibing Jin, Julienne Stroeve Feb 2016

Synchronicity Between Ice Retreat And Phytoplankton Bloom In Circum‐Antarctic Polynyas, Yun Li, Rubao Ji, Meibing Jin, Julienne Stroeve

Marine Science Faculty Publications

Phytoplankton in Antarctic coastal polynyas has a temporally short yet spatially variant growth window constrained by ice cover and day length. Using 18‐year satellite measurements (1997–2015) of sea ice and chlorophyll concentrations, we assessed the synchronicity between the spring phytoplankton bloom and light availability, taking into account the ice cover and the incident solar irradiance, for 50 circum‐Antarctic coastal polynyas. The synchronicity was strong (i.e., earlier ice‐adjusted light onset leads to earlier bloom and vice versa) in most of the western Antarctic polynyas but weak in a majority of the eastern Antarctic polynyas. The west‐east asymmetry is related to sea …

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Method For Measuring The Unbinding Energy Of Strongly-Bound Membrane-Associated Proteins, Elisa La Bauve, Briana C. Vernon, Dongmei Ye, David M. Rogers, Cathryn M. Siegrist, Bryan D. Carson, Susan B. Rempe, Aihua Zheng, Margaret Kielian, Andrew P. Shreve, Michael S. Kent Feb 2016

Method For Measuring The Unbinding Energy Of Strongly-Bound Membrane-Associated Proteins, Elisa La Bauve, Briana C. Vernon, Dongmei Ye, David M. Rogers, Cathryn M. Siegrist, Bryan D. Carson, Susan B. Rempe, Aihua Zheng, Margaret Kielian, Andrew P. Shreve, Michael S. Kent

Chemistry Faculty Publications

We describe a new method to measure the activation energy for unbinding (enthalpy ΔH*u and free energy ΔG*u) of a strongly-bound membrane-associated protein from a lipid membrane. It is based on measuring the rate of release of a liposome-bound protein during centrifugation on a sucrose gradient as a function of time and temperature. The method is used to determine ΔH*u and ΔG*u for the soluble dengue virus envelope protein (sE) strongly bound to 80:20 POPC:POPG liposomes at pH 5.5. ΔH*u is determined from the Arrhenius equation whereas ΔG*u is …

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Gut Immunity In A Protochordate Involves A Secreted Immunoglobulin-Type Mediator Binding Host Chitin And Bacteria, Larry J. Dishaw, Brittany Leigh, John P. Cannon, Assunta Liberti, M. Gail Mueller, Diana P. Skapura, Charlotte R. Karrer, Maria R. Pinto, Rosaria De Santis, Gary W. Litman Feb 2016

Gut Immunity In A Protochordate Involves A Secreted Immunoglobulin-Type Mediator Binding Host Chitin And Bacteria, Larry J. Dishaw, Brittany Leigh, John P. Cannon, Assunta Liberti, M. Gail Mueller, Diana P. Skapura, Charlotte R. Karrer, Maria R. Pinto, Rosaria De Santis, Gary W. Litman

Marine Science Faculty Publications

Protochordate variable region-containing chitin-binding proteins (VCBPs) consist of immunoglobulin-type V domains and a chitin-binding domain (CBD). VCBP V domains facilitate phagocytosis of bacteria by granulocytic amoebocytes; the function of the CBD is not understood. Here we show that the gut mucosa of Ciona intestinalis contains an extensive matrix of chitin fibrils to which VCBPs bind early in gut development, before feeding. Later in development, VCBPs and bacteria colocalize to chitin-rich mucus along the intestinal wall. VCBP-C influences biofilm formation in vitro and, collectively, the findings of this study suggest that VCBP-C may influence the overall settlement and colonization of bacteria …

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Role Of Deubiquitinating Enzymes In Dna Repair, Younghoon Kee, Tony T. Huang Feb 2016

Role Of Deubiquitinating Enzymes In Dna Repair, Younghoon Kee, Tony T. Huang

Molecular Biosciences Faculty Publications

Both proteolytic and nonproteolytic functions of ubiquitination are essential regulatory mechanisms for promoting DNA repair and the DNA damage response in mammalian cells. Deubiquitinating enzymes (DUBs) have emerged as key players in the maintenance of genome stability. In this minireview, we discuss the recent findings on human DUBs that participate in genome maintenance, with a focus on the role of DUBs in the modulation of DNA repair and DNA damage signaling.

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Darwinian Sex Roles Confirmed Across The Animal Kingdom, Tim Janicke, Ines K. Häderer, Marc J. Lajeunesse, Nils Anthes Feb 2016

Darwinian Sex Roles Confirmed Across The Animal Kingdom, Tim Janicke, Ines K. Häderer, Marc J. Lajeunesse, Nils Anthes

Integrative Biology Faculty and Staff Publications

Since Darwin's conception of sexual selection theory, scientists have struggled to identify the evolutionary forces underlying the pervasive differences between male and female behavior, morphology, and physiology. The Darwin-Bateman paradigm predicts that anisogamy imposes stronger sexual selection on males, which, in turn, drives the evolution of conventional sex roles in terms of female-biased parental care and male-biased sexual dimorphism. Although this paradigm forms the cornerstone of modern sexual selection theory, it still remains untested across the animal tree of life. This lack of evidence has promoted the rise of alternative hypotheses arguing that sex differences are entirely driven by environmental …

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Genome-Wide Annotation, Identification, And Global Transcriptomic Analysis Of Regulatory Or Small Rna Gene Expression In Staphylococcus Aureus, Ronan K. Carroll, Andy Weiss, William H. Broach, Richard E Wiemels, Austin B. Mogen, Kelly C. Rice, Lindsey N. Shaw Feb 2016

Genome-Wide Annotation, Identification, And Global Transcriptomic Analysis Of Regulatory Or Small Rna Gene Expression In Staphylococcus Aureus, Ronan K. Carroll, Andy Weiss, William H. Broach, Richard E Wiemels, Austin B. Mogen, Kelly C. Rice, Lindsey N. Shaw

Molecular Biosciences Faculty Publications

In Staphylococcus aureus, hundreds of small regulatory or small RNAs (sRNAs) have been identified, yet this class of molecule remains poorly understood and severely understudied. sRNA genes are typically absent from genome annotation files, and as a consequence, their existence is often overlooked, particularly in global transcriptomic studies. To facilitate improved detection and analysis of sRNAs in S. aureus, we generated updated GenBank files for three commonly used S. aureus strains (MRSA252, NCTC 8325, and USA300), in which we added annotations for >260 previously identified sRNAs. These files, the first to include genome-wide annotation of sRNAs in S. aureus, were …

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The Two-Component System Cpxra Negatively Regulates The Locus Of Enterocyte Effacement Of Enterohemorrhagic Escherichia Coli Involving Σ32 And Lon Protease, Miguel A. De La Cruz, Jason K. Morgan, Miguel A. Ares, Jorge A. Yáñez-Santos, James T. Riordan, Jorge A. Girón Feb 2016

The Two-Component System Cpxra Negatively Regulates The Locus Of Enterocyte Effacement Of Enterohemorrhagic Escherichia Coli Involving Σ32 And Lon Protease, Miguel A. De La Cruz, Jason K. Morgan, Miguel A. Ares, Jorge A. Yáñez-Santos, James T. Riordan, Jorge A. Girón

Molecular Biosciences Faculty Publications

Enterohemorrhagic Escherichia coli (EHEC) is a significant cause of serious human gastrointestinal disease worldwide. EHEC strains contain a pathogenicity island called the locus of enterocyte effacement (LEE), which encodes virulence factors responsible for damaging the gut mucosa. The Cpx envelope stress response of E. coli is controlled by a two-component system (TCS) consisting of a sensor histidine kinase (CpxA) and a cytoplasmic response regulator (CpxR). In this study, we investigated the role of CpxRA in the expression of LEE-encoded virulence factors of EHEC. We found that a mutation in cpxA significantly affected adherence of EHEC to human epithelial cells. Analysis …

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Dynamics And Thermal Sensitivity Of Ballistic And Non-Ballistic Feeding In Salamanders, Stephen M, Deban, Jeffrey A. Scales Feb 2016

Dynamics And Thermal Sensitivity Of Ballistic And Non-Ballistic Feeding In Salamanders, Stephen M, Deban, Jeffrey A. Scales

Integrative Biology Faculty and Staff Publications

Low temperature reduces the performance of muscle-powered movements, but in movements powered by elastic recoil mechanisms, this effect can be mitigated and performance can be increased. To better understand the morphological basis of high performance and thermal robustness of elastically powered movements, we compared feeding dynamics at a range of temperatures (5-25°C) in two species of terrestrial plethodontid salamanders, Plethodon metcalfi and Ensatina eschscholtzii, which differ in tongue muscle architecture and the mechanism of tongue projection. We found that Ensatina is capable of ballistic projection with a mean muscle mass-specific power of 2100 W kg(-1), revealing an elastic mechanism. Plethodon, …

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Begomovirus-Associated Satellite Dna Diversity Captured Through Vector-Enabled Metagenomic (Vem) Surveys Using Whiteflies (Aleyrodidae), Karyna Rosario, Christian Marr, Arvind Varsani, Simona Kraberger, Daisy Stainton, Enrique Moriones, Jane E Polston, Mya Breitbart Feb 2016

Begomovirus-Associated Satellite Dna Diversity Captured Through Vector-Enabled Metagenomic (Vem) Surveys Using Whiteflies (Aleyrodidae), Karyna Rosario, Christian Marr, Arvind Varsani, Simona Kraberger, Daisy Stainton, Enrique Moriones, Jane E Polston, Mya Breitbart

Marine Science Faculty Publications

Monopartite begomoviruses (Geminiviridae), which are whitefly-transmitted single-stranded DNA viruses known for causing devastating crop diseases, are often associated with satellite DNAs. Since begomovirus acquisition or exchange of satellite DNAs may lead to adaptation to new plant hosts and emergence of new disease complexes, it is important to investigate the diversity and distribution of these molecules. This study reports begomovirus-associated satellite DNAs identified during a vector-enabled metagenomic (VEM) survey of begomoviruses using whiteflies collected in various locations (California (USA), Guatemala, Israel, Puerto Rico, and Spain). Protein-encoding satellite DNAs, including alphasatellites and betasatellites, were identified in Israel, Puerto Rico, and Guatemala. Novel …

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Global Regulator Of Virulence A (Grva) Coordinates Expression Of Discrete Pathogenic Mechanisms In Enterohemorrhagic Escherichia Coli Through Interactions With Gadw-Gade, Jason K. Morgan, Ronan K. Carroll, Carly M. Harro, Khoury W Vendura, Lindsey N. Shaw, James T. Riordan Feb 2016

Global Regulator Of Virulence A (Grva) Coordinates Expression Of Discrete Pathogenic Mechanisms In Enterohemorrhagic Escherichia Coli Through Interactions With Gadw-Gade, Jason K. Morgan, Ronan K. Carroll, Carly M. Harro, Khoury W Vendura, Lindsey N. Shaw, James T. Riordan

Molecular Biosciences Faculty Publications

UNLABELLED: Global regulator of virulence A (GrvA) is a ToxR-family transcriptional regulator that activates locus of enterocyte effacement (LEE)-dependent adherence in enterohemorrhagic Escherichia coli (EHEC). LEE activation by GrvA requires the Rcs phosphorelay response regulator RcsB and is sensitive to physiologically relevant concentrations of bicarbonate, a known stimulant of virulence systems in intestinal pathogens. This study determines the genomic scale of GrvA-dependent regulation and uncovers details of the molecular mechanism underlying GrvA-dependent regulation of pathogenic mechanisms in EHEC. In a grvA-null background of EHEC strain TW14359, RNA sequencing analysis revealed the altered expression of over 700 genes, including the downregulation …

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The Ecological Succession Of Mosquitoes Inhabiting Waste Tires In A Subtropical Swamp And Upland Forest In Central West Florida, Emily Thuong Nguyen Dinh Feb 2016

The Ecological Succession Of Mosquitoes Inhabiting Waste Tires In A Subtropical Swamp And Upland Forest In Central West Florida, Emily Thuong Nguyen Dinh

USF Tampa Graduate Theses and Dissertations

Literature has not yet seen a contribution involving the description of successional patterns of mosquitoes (Diptera: Culicidae) inhabiting discarded automobile tires in sylvan areas nor an investigation into the macro- and micro-environmental factors that may influence the seasonal shifts in species composition and abundance in that respective habitat. Waste tires in undeveloped forests are a hazard to human and animal health because they can support a population of vector mosquitoes. Locating productive waste tire mosquito habitats is problematic in wooded areas but is crucial for diminishing pathogen transfer in areas where humans have regular access to forests because of possible …

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Predator Diet And Trophic Position Modified With Altered Habitat Morphology, Alexander Tewfik, Susan S. Bell, Kevin S. Mccann, Kristina Morrow Jan 2016

Predator Diet And Trophic Position Modified With Altered Habitat Morphology, Alexander Tewfik, Susan S. Bell, Kevin S. Mccann, Kristina Morrow

Integrative Biology Faculty and Staff Publications

Empirical patterns that emerge from an examination of food webs over gradients of environmental variation can help to predict the implications of anthropogenic disturbance on ecosystems. This “dynamic food web approach” is rarely applied at the coastal margin where aquatic and terrestrial systems are coupled and human development activities are often concentrated. We propose a simple model of ghost crab (Ocypode quadrata) feeding that predicts changing dominant prey (Emerita talpoida, Talorchestia sp., Donax variablis) along a gradient of beach morphology and test this model using a suite of 16 beaches along the Florida, USA coast. …

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Diversity Of Cultured Bacteria From The Perennial Ice Block Of Scarisoara Ice Cave, Romania, Corina Iţcuş, Mădălina-Denisa Pascu, Traian Brad, Aurel Perşoiu, Cristina Purcarea Jan 2016

Diversity Of Cultured Bacteria From The Perennial Ice Block Of Scarisoara Ice Cave, Romania, Corina Iţcuş, Mădălina-Denisa Pascu, Traian Brad, Aurel Perşoiu, Cristina Purcarea

International Journal of Speleology

Cave ice ecosystems represent a poorly investigated glacial environment. Diversity of cave ice bacteria and their distribution in perennial ice deposits of this underground glacial habitat could constitute a proxy for microbial response to climatic and environmental changes. Scarisoara Ice Cave (Romania) hosts one of the oldest and largest cave ice blocks worldwide. Here we report on cultured microbial diversity of recent, 400, and 900 years-old perennial ice from this cave, representing the first characterization of a chronological distribution of cave-ice bacteria. Total cell density measured by SYBR Green I epifluorescence microscopy varied in the 2.4 x 104 – …

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Identification Of Novel Cyclic Lipopeptides From A Positional Scanning Combinatorial Library With Enhanced Antibacterial And Antibiofilm Activities, Nina Bionda, Renee M. Fleeman, César De La Fuente-Núñez, Maria C. Rodriguez, Fany Reffuveille, Lindsey N. Shaw, Irena Pastar, Stephen C Davis, Robert E W Hancock, Predrag Cudic Jan 2016

Identification Of Novel Cyclic Lipopeptides From A Positional Scanning Combinatorial Library With Enhanced Antibacterial And Antibiofilm Activities, Nina Bionda, Renee M. Fleeman, César De La Fuente-Núñez, Maria C. Rodriguez, Fany Reffuveille, Lindsey N. Shaw, Irena Pastar, Stephen C Davis, Robert E W Hancock, Predrag Cudic

Molecular Biosciences Faculty Publications

Treating bacterial infections can be difficult due to innate or acquired resistance mechanisms, and the formation of biofilms. Cyclic lipopeptides derived from fusaricidin/LI-F natural products represent particularly attractive candidates for the development of new antibacterial and antibiofilm agents, with the potential to meet the challenge of bacterial resistance to antibiotics. A positional-scanning combinatorial approach was used to identify the amino acid residues responsible for driving antibacterial activity, and increase the potency of these cyclic lipopeptides. Screening against the antibiotic resistant ESKAPE pathogens revealed the importance of hydrophobic as well as positively charged amino acid residues for activity of this class …

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Climate Controls Multidecadal Variability In U. S. Extreme Sea Level Records, Thomas Wahl, Don P. Chambers Jan 2016

Climate Controls Multidecadal Variability In U. S. Extreme Sea Level Records, Thomas Wahl, Don P. Chambers

Marine Science Faculty Publications

We investigate the links between multidecadal changes in extreme sea levels (expressed as 100 year return water levels (RWLs)) along the United States coastline and large‐scale climate variability. We develop different sets of simple and multiple linear regression models using both traditional climate indices and tailored indices based on nearby atmospheric/oceanic variables (winds, pressure, sea surface temperature) as independent predictors. The models, after being tested for spatial and temporal stability, are capable of explaining large fractions of the observed variability, up to 96% at individual sites and more than 80% on average across the region. Using the model predictions as …

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Characterization Of Available Light For Seagrass And Patch Reef Productivity In Sugarloaf Key, Lower Florida Keys, Gerardo Toro-Farmer, Frank E. Muller-Karger, Maria Vega-Rodriguez, Nelson Melo, Kimberly Yates, Sergio Cerdeira-Estrada, Stanley R. Herwitz Jan 2016

Characterization Of Available Light For Seagrass And Patch Reef Productivity In Sugarloaf Key, Lower Florida Keys, Gerardo Toro-Farmer, Frank E. Muller-Karger, Maria Vega-Rodriguez, Nelson Melo, Kimberly Yates, Sergio Cerdeira-Estrada, Stanley R. Herwitz

Marine Science Faculty Publications

Light availability is an important factor driving primary productivity in benthic ecosystems, but in situ and remote sensing measurements of light quality are limited for coral reefs and seagrass beds. We evaluated the productivity responses of a patch reef and a seagrass site in the Lower Florida Keys to ambient light availability and spectral quality. In situ optical properties were characterized utilizing moored and water column bio-optical and hydrographic measurements. Net ecosystem productivity (NEP) was also estimated for these study sites using benthic productivity chambers. Our results show higher spectral light attenuation and absorption, and lower irradiance during low tide …

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Measurement Of Elastic Modulus Of Collagen Type I Single Fiber, Pavel Dutov, Olga Antipova, Sameer Varma, Joseph P R O Orgel, Jay D Schieber Jan 2016

Measurement Of Elastic Modulus Of Collagen Type I Single Fiber, Pavel Dutov, Olga Antipova, Sameer Varma, Joseph P R O Orgel, Jay D Schieber

Molecular Biosciences Faculty Publications

Collagen fibers are the main components of the extra cellular matrix and the primary contributors to the mechanical properties of tissues. Here we report a novel approach to measure the longitudinal component of the elastic moduli of biological fibers under conditions close to those found in vivo and apply it to type I collagen from rat tail tendon. This approach combines optical tweezers, atomic force microscopy, and exploits Euler-Bernoulli elasticity theory for data analysis. This approach also avoids drying for measurements or visualization, since samples are freshly extracted. Importantly, strains are kept below 0.5%, which appear consistent with the linear …

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