Life Sciences Commons^™

Gene Order Data From A Model Amphibian (Ambystoma): New Perspectives On Vertebrate Genome Structure And Evolution, Jeramiah J. Smith, S. Randal Voss

Biology Faculty Publications

BACKGROUND: Because amphibians arise from a branch of the vertebrate evolutionary tree that is juxtaposed between fishes and amniotes, they provide important comparative perspective for reconstructing character changes that have occurred during vertebrate evolution. Here, we report the first comparative study of vertebrate genome structure that includes a representative amphibian. We used 491 transcribed sequences from a salamander (Ambystoma) genetic map and whole genome assemblies for human, mouse, rat, dog, chicken, zebrafish, and the freshwater pufferfish Tetraodon nigroviridis to compare gene orders and rearrangement rates.

RESULTS: Ambystoma has experienced a rate of genome rearrangement that is substantially lower than mammalian …

Forage News [2006-08], Department Of Plant And Soil Sciences, University Of Kentucky

Forage News

• KFGC Awards Nominations
• Forage Spokesman Nominations
• UK Robinson Station to Host College of Ag Field Day
• Kentucky Department of Agriculture Forage Testing Program
• More Hay…..
• Guidelines for Successful Forage Establishment
• Upcoming Events

Forage News [2006-07], Department Of Plant And Soil Sciences, University Of Kentucky

Forage News

• Determining Forage Moisture Content Using a Microwave Oven
• KFGC Field Day
• Kentucky: Did You Know
• KFGC Awards Program
• Forage Spokesman Nominations
• Hay Storage Demonstration Farm Project Evaluating Impact of Indoor Storage
• Agrotain Reduces Ammonia Loss from Surface-Applied Urea
• Grazing Corn
• Upcoming Events

Development And Testing Of A Low-Cost Condensation Detection System, Michael D. Montross, George A. Duncan, Richard S. Gates

Biosystems and Agricultural Engineering Faculty Publications

A condensation sensing and control system was designed to detect condensation using a commercially available leaf wetness sensor (LWS). The leaf wetness sensor was a variable resistance grid-type that responded to moisture on the surface. A circuit was developed to compare the LWS voltage output to a user specified reference voltage, and operate a relay for possible switching of a humidity control device (for example a fan and/or heater). The condensation detection system operation was validated in an environmental chamber in the laboratory using a heat exchanger and water bath. Condensate was immediately detected when the plate was cooled below …

Dissociation Of Automatic And Strategic Lexical-Semantics: Functional Magnetic Resonance Imaging Evidence For Differing Roles Of Multiple Frontotemporal Regions, Brian T. Gold, David A. Balota, Sara J. Jones, David K. Powell, Charles D. Smith, Anders H. Andersen

Neuroscience Faculty Publications

Behavioral research has demonstrated three major components of the lexical-semantic processing system: automatic activation of semantic representations, strategic retrieval of semantic representations, and inhibition of competitors. However, these component processes are inherently conflated in explicit lexical-semantic decision tasks typically used in functional magnetic resonance imaging (fMRI) research. Here, we combine the logic of behavioral priming studies and the neurophysiological phenomenon of fMRI priming to dissociate the neural bases of automatic and strategic lexical-semantic processes across a series of three studies. A single lexical decision task was used in all studies, with stimulus onset asynchrony or linguistic relationship between prime and …

Forage News [2006-06], Department Of Plant And Soil Sciences, University Of Kentucky

Forage News

• UK Animal Research Center Field Day
• Effect of Storage Method on Round Bale Hay Loss
• Kentucky Milk Production
• Kentucky Welcomes Dr. Rebecca McCulley
• Average Prices Received by Farmers–(Dollars)
• Bioterrorism & Hay
• Reducing Broiler Litter Application Rates Can Still Produce High Yield and Quality in Sorghum Sudangrass
• Measuring Variation in Alfalfa Yield and Stand Using Conventional Remote Sensing Techniques
• Upcoming Events

Methods And Compositions For Expressing Multiple Genes In Plants By Alternate Splicing Of A Polycistronic Message, Indu Bhushan Maiti, Somnath Bhattacharyya

Kentucky Tobacco Research and Development Center Faculty Patents

The present invention provides a method and composition for expression of multiple genes from a polycistronic message in transgenic plants using genetic elements derived from the peanut chlorotic streak caulimovirus promoter-leader sequence and antisense sequence of PC1SV ORF VII. Also provided are compositions and methods for intron-mediated enhanced and regulated expression of genes in transgenic plants.

Forage News [2006-05], Department Of Plant And Soil Sciences, University Of Kentucky

Forage News

• Barren County Continued as Cattle Capital of Kentucky
• Storing Alfalfa as Round Bale Silage: Frequently Asked Questions
• Cowpea Aphid in Kentucky Alfalfa
• Disk vs. Sickle Cutterbar Mowers
• Organic Hay
• UK Beef/Forage Field Day June 15
• Last Chance!!!
• Upcoming Events

Shelling Out For Genomics, Timothy S. Mcclintock, Charles D. Derby

Physiology Faculty Publications

A report on the symposium 'Genomic and Proteomic Approaches to Crustacean Biology' held as part of the Society for Integrative and Comparative Biology 2006 Annual Meeting, Orlando, USA, 4-8 January 2006.

Prenatal Cocaine Exposure Alters Alpha2 Receptor Expression In Adolescent Rats, Rosemarie M. Booze, David R. Wallace, Janelle M. Silvers, Barbara J. Strupp, Diane M. Snow, Charles F. Mactutus

Neuroscience Faculty Publications

BACKGROUND: Prenatal cocaine exposure produces attentional deficits which to persist through early childhood. Given the role of norepinephrine (NE) in attentional processes, we examined the forebrain NE systems from prenatal cocaine exposed rats. Cocaine was administered during pregnancy via the clinically relevant intravenous route of administration. Specifically, we measured alpha2-adrenergic receptor (alpha2-AR) density in adolescent (35-days-old) rats, using [3H]RX821002 (5 nM).

RESULTS: Sex-specific alterations of alpha2-AR were found in the hippocampus and amygdala of the cocaine-exposed animals, as well as an upregulation of alpha2-AR in parietal cortex.

CONCLUSION: These data suggest that prenatal cocaine exposure results in a persistent alteration …

Forage News [2006-04], Department Of Plant And Soil Sciences, University Of Kentucky

Forage News

• 27^th Kentucky Alfalfa Conference Date Set
• 7^th Kentucky Grazing Conference Date Set
• Heart of America Grazing Conference in Illinois
• Proceedings Available On-Line
• KFGC Forage Field Day
• Kentucky Producer Wins 1^st Place at AFGC Hay Show
• UK Robinson Station to Host College of Ag Field Day
• Kentucky Reaps Awards at AFGC Meeting
• WKU Students Play Prominent Role at AFGC Meeting
• Rooting Depth of Alfalfa
• Environmental and Economic Evaluation of Grass and Corn Based Production Systems
• On a Maryland Beef Farm
• The Economics of Organic and Grazing Dairy Farms
• Reminder - Don’t Forget!!!
• Upcoming Events

Cyclooxygenase-2 Mediates Microglial Activation And Secondary Dopaminergic Cell Death In The Mouse Mptp Model Of Parkinson's Disease, Rattanavijit Vijitruth, Mei Liu, Dong-Young Choi, Xuan V. Nguyen, Randy L. Hunter, Guoying Bing

Neuroscience Faculty Publications

BACKGROUND: Accumulating evidence suggests that inflammation plays an important role in the progression of Parkinson's disease (PD). Among many inflammatory factors found in the PD brain, cyclooxygenase (COX), specifically the inducible isoform, COX-2, is believed to be a critical enzyme in the inflammatory response. Induction of COX-2 is also found in an experimental model of PD produced by administration of 1-methy-4-phenyl-1,2,3,6-tetrahydropyridine (MPTP).

METHOD: COX-2-deficient mice or C57BL/6 mice were treated with MPTP to investigate the effects of COX-2 deficiency or by using various doses of valdecoxib, a specific COX-2 inhibitor, which induces inhibition of COX-2 on dopaminergic neuronal toxicity and …

Poster Session, Kentucky Water Resources Research Institute, University Of Kentucky

Kentucky Water Resources Annual Symposium

• Limestone-Based Material for Arsenic Removal from Drinking Water, Chelsea Campbell and others, Dept of Chemistry, WKU
• Opportunistic Water Education, Amanda Abnee Gumbert, Extension Associate for Environmental and Natural Resources Issues, UK
• Ten-Year Solute Concentration Patterns in Two Streams of Contrasting Land-Use in Western Kentucky and Tennessee, Susan P. Hendricks, Hancock Biological Station, Murray State University
• Pathogen TMDL Development using Load Duration Curves for Two Stream Segments in Rockcastle County, Kentucky, Joseph M. Ferguson, Kentucky DOW
• Beargrass Creek Water Quality Tool and TMDLs, Ward Wilson and others, Tetra Tech
• Pathogen and Sediment Transport in Muddy Creek …

Session 2d: Modeling, Kentucky Water Resources Research Institute, University Of Kentucky

Kentucky Water Resources Annual Symposium

• Simplification of Access to Hydrologic Data for Kentucky through an Online, Interactive GIS Tool, K. R. Odom and M. A. Ayers, USGS, Louisville
• The Kentucky Watershed Modeling Information Portal’s User Needs Assessment, Data Matrix and Use Case, K. L. Schaffer, K. R. Odom, and others, FMSM and USGS
• A Comparison of Manually and DEM Delineated Watersheds, Andrew Kellie, Jane Benson, and Mike Kemp, Dept of Industrial and Engineering Technology, Murray State University
• Of Farm Ponds and Sinkholes: Automated Feature Extraction from Kentucky’s NAIP Imagery, Demetrio Zourarakis, Kentucky Division of Geographic Information

Session 2c: Planning, Kentucky Water Resources Research Institute, University Of Kentucky

Kentucky Water Resources Annual Symposium

• US EPA’s New Guidance on Watershed-Based Plans for Restoration and Protection, Barry Tonning, Tetra Tech, Mount Sterling, KY
• Louisville Water Company – Wellhead Protection Plan, Marsha L. Taylor Meyer, Louisville Water Company
• Lessons Learned Reforesting the Bluegrass, H. David Gabbard, LFUCG, Lexington, KY
• Low-Flow Characteristics of Streams in Kentucky, G.R. Martin, D.W. Evans, and K.R. Odom, USGS, Louisville

Session 2b: Sediments, Kentucky Water Resources Research Institute, University Of Kentucky

Kentucky Water Resources Annual Symposium

• The New Contractor EPSC Certification Program Developed by the City of Bowling Green Kentucky: Educating and Involving Contractors in NPDES Phase II Compliance, Jeff Lashlee, City of Bowling Green, Beth Chesson, CEC, Inc., and April Barker, AMEC Earth and Environmental, Nashville, TN
• Kentucky Best Management Practices for Controlling Erosion, Sediment, and Pollutant Runoff from Construction Sites: Planning and Technical Specifications Manual, Richard Walker and Barry Tonning, Tetra Tech, Lexington
• Sediment Monitoring Efforts in the Upper Green River Basin in Support of the Kentucky Conservation Reserve Enhancement Program, S.T. Kenworthy, Dept of Geography and Geology, WKU
• Land-Use Fingerprinting …

Session 2a: Nonpoint Source, Kentucky Water Resources Research Institute, University Of Kentucky

Kentucky Water Resources Annual Symposium

• Little River Watershed Delineation and “Misbehaved” Karst Drainage, J.A. Ray and R.J. Blair, Kentucky Division of Water
• Comprehensive Commonwealth Water Education Project, David Howarth, Keith Mountain, and Kristen Dunaway, Dept of Geography and Geosciences, U of L
• Assessment of Water Quality Trends in the Upper Cumberland River Basin: Focus on Pathogen Impairment, Lindell Ormsbee and Ramesh Teegavarapu, KWRRI, UK
• Watershed & Land Use Planning: A BMP Technology Transfer Project (A Case Study of the Dry Run Watershed Basin), Rachel Phillips, Brad Frazier, and Sandy Camargo, Georgetown/Scott County Planning Commission

Session 1d: Monitoring, Kentucky Water Resources Research Institute, University Of Kentucky

Kentucky Water Resources Annual Symposium

• An Examination of Statewide Watershed Watch Project Monitoring Data for 2005 Using GIS, Ken Cooke, Kentucky Division of Water, Frankfort
• Taking Watershed Watch to the Next Level: Grabbing the Attention of Local Elected Officials, Ken Cooke, Kentucky Division of Water, H. David Gabbard, LFUCG, Lexington
• Water Quality Data from Citizen Monitoring in the Licking River Region Kentucky 1998-2005: Trends and Issues, M.F. Hult, Daniel Carter Beard Environmental Center, and B.C. Reeder, Center for Environmental Education, Morehead State University
• Water Quality in the Upper Licking River Basin 2003-2005, Brian Reeder and others, Dept of Biological and Environmental …

Session 1c: Superfund, Kentucky Water Resources Research Institute, University Of Kentucky

Kentucky Water Resources Annual Symposium

• The University of Kentucky Superfund Basic Research Program: Overview and Examples of Research Projects, Bernhard Hennig, Leonidas Bachas, and Lindell Ormsbee, UK
• Reductive Dechlorination of Toxic Organics by Bimetallic Nanoparticles in Polyacrylic Acid (PAA) Functionalized MF Membranes, Jian Xu and Dibakar Bhattacharyya, Dept Chemical and Materials Engineering, UK
• Chlorinated Organic Compounds Destruction by Modified Fenton Reaction Involving Immobilized Iron-Chelate, YongChao Li, Leonidas Bachas, and Dibakar Bhattacharyya, Dept Chemical and Materials Engineering, UK
• An Outreach Program Translates Basic Research for Superfund Communities to Improve Health through Nutrition, Lisa Gaetke and Sandra Bastin, Dept Nutrition and Food Science, …

Session 1b: Groundwater, Kentucky Water Resources Research Institute, University Of Kentucky

Kentucky Water Resources Annual Symposium

• A Brief History and Current State of Groundwater Protection in Kentucky, James Webb, Beverly Oliver, and Peter Goodmann, Kentucky DOW, Groundwater Branch
• Summary of Groundwater Quality Data in the Jackson Purchase Region, Kentucky, E.G. Beck, J.S. Dinger, and P.C. Inkenbrandt, KGS
• Groundwater-Quality Assessment and Shallow Aquifer Model of Calloway County, Kentucky, P.C. Inkenbrandt, E.G. Beck, and J.S. Dinger, KGS
• Suspended Sediment and Pathogen Transport in Two Inner Bluegrass Karst Ground-Water Basins, A.E. Fryar and others, Dept Earth and Environmental Sciences, UK
• Locating and Mapping Domestic Water Wells in Marshall County, Kentucky, Wendy D. Langhi, Western …

Session 1a: Water Quality, Kentucky Water Resources Research Institute, University Of Kentucky

Kentucky Water Resources Annual Symposium

• Use of Sunfish and Stoneroller Minnows as Sentinel Monitors of PCB Contamination in Freshwater Streams in Kentucky, D.J. Price and W.J. Birge, Dept of Biology, UK
• Inferring Causes of Biological Impairment in Appalachian Streams: Watershed-Based Problem Formulation and Integration of Multiple Lines of Evidence, Jon Ludwig and others, Tetra Tech
• Relative Importance of Water and Dietary Cadmium: Toxicity to Ceriodaphnia Dubia, Agus Sofyan and W.J. Birge, Dept of Biology, UK
• The Graywater Story at Curtis Pike, Jack Kieffer and others, Appalachia - Science in the Public Interest, Mt. Vernon

Proceedings Of 2006 Kentucky Water Resources Annual Symposium, Kentucky Water Resources Research Institute, University Of Kentucky

Kentucky Water Resources Annual Symposium

This symposium was funded in part by the U.S. Environmental Protection Agency, with Clean Water Act, Section 319(h) grant money through the Kentucky Division of Water and the Kentucky Waterways Alliance, #C9994861-00.

Planning for this conference was conducted as part of the state water resources research annual program with the support and collaboration of the Department of Interior, U.S. Geological Survey and the University of Kentucky Research Foundation, under Grant Agreement No. 01HQGR0133.

The views and conclusions contained in this document are those of the abstract authors and should not be interpreted as necessarily representing the official policies, either expressed …

Forage News [2006-03], Department Of Plant And Soil Sciences, University Of Kentucky

Forage News

• 26^th Kentucky Alfalfa Conference
• Alfalfa Award Recipients Honored
• Improved Alfalfa Varieties
• Kentucky Forage & Grassland Council Awards for 2006
• How are Pasture Quality, Soil Quality, and Soil Organic Carbon Content Linked? Lessons from South Central Iowa
• Common Red Clover
• Poultry Litter Rate Study in Tall Fescue
• Stockpiling Publication Revised
• Mailing List Update
• Upcoming Events

[Review Of] Stable Isotopes And Biosphere–Atmosphere Interactions: Processes And Biological Controls, Mark S. Coyne

Plant and Soil Sciences Faculty Publications

No abstract provided.

Forage Testing Program, Michael Judge

Kentucky Alfalfa and Stored Forage Conference

Livestock farmers who need hay can find it right here in Kentucky. Listings of farms with hay for sale can be found on the Hay and Forage Program page of the Kentucky Department of Agriculture’s Web site, www.kyagr.com.

Why Dairy Farmers Need And Want High Quality Alfalfa Hay: Quality Of Hay = Performance And Profitability, Donna M. Amaral-Phillips

Kentucky Alfalfa and Stored Forage Conference

Why do dairy farmers want high quality forages, including alfalfa hay, to feed to their milking herds? Feeding high-quality forages results in greater feed intake and as a result, dairy cows produce more milk, and they often times can produce this milk more economically. With advancing stage of plant maturity, fiber digestibility and protein content of the alfalfa plant decreases while the amount of fiber increases. Consequently, less energy is available to the cow when it consumes more mature alfalfa. Energy is the nutrient that most often limits performance in dairy or beef cattle - not protein. The take home …

Alfalfa Hay For Horses, Robert Coleman

Kentucky Alfalfa and Stored Forage Conference

When horse owners consider hay for their animals a number of criteria are generally considered. Of major importance is the hay must be free of mold and dust, it needs to contain nutrients needed by the horse and it must be palatable. If these criteria are met, the type of hay should not matter. However, that is not the case with many horse owners. When discussing hay, many owners first consider the type of hay. Can it be alfalfa or should it be a grass or how about a mix of grass and a legume. If a group of horse …

Interpreting Forage Quality Test Reports, Donna M. Amaral-Phillips

Kentucky Alfalfa and Stored Forage Conference

Forages are the foundation for building diets for beef and dairy cattle, horses, sheep and goats. The quality of these forages directly impacts forage intake, animal performance, and, ultimately, the profitability to their owners. As the quality of forages decline, consumption of that forage decreases and the amount of grain or byproducts which must be fed increases. The cost for a unit of performance increases and/or the animal can not perform (i.e. milk or gain) to the optimum level thus lowering profitability to the animal owner. These relationships are especially true with young and high performance ruminants, such as high …

Moisture Management In Hay Making And Storage, Tom Keene, Doug Overhults

Kentucky Alfalfa and Stored Forage Conference

Making hay in central Kentucky can be one of the most trying on farm endeavors a producer can undertake. Our plentiful moisture, rolling topography, and climate make Kentucky ideal for producing high quality forage for either grazing or hay making. However, that same moisture, either in the form of rain or high humidity, can sometimes make it devilishly hard to make hay here in Kentucky.

Storing Alfalfa As Round Bale Silage, David C. Ditsch

Kentucky Alfalfa and Stored Forage Conference

Hay is the most popular method for storing alfalfa because it stores well for long periods and is better suited to cash sale and transportation than silage. However, silage may be a suitable option when and/or where hay curing is difficult. Due to numerous improvements in baling and wrapping equipment, it is possible to make high quality round bale silage using long (unchopped) alfalfa crops.