Life Sciences Commons^™

Similarities And Differences Between Variants Called With Human Reference Genome Hg19 Or Hg38, Bohu Pan, Rebecca Kusko, Wenming Xiao, Yuantin Zheng, Zhichao Liu, Chunlin Xiao, Sugunadevi Sakkiah, Wenjing Guo, Ping Gong, Chaoyang Zhang, Weigong Ge, Leming Shi, Weida Tong, Huixiao Hong

Faculty Publications

Background: Reference genome selection is a prerequisite for successful analysis of next generation sequencing (NGS) data. Current practice employs one of the two most recent human reference genome versions: HG19 or HG38. To date, the impact of genome version on SNV identification has not been rigorously assessed.

Results: We conducted analysis comparing the SNVs identified based on HG19 vs HG38, leveraging whole genome sequencing (WGS) data from the genome-in-a-bottle (GIAB) project. First, SNVs were called using 26 different bioinformatics pipelines with either HG19 or HG38. Next, two tools were used to convert the called SNVs between HG19 and …

White Spot Syndrome Virus (Wssv) In Cultured Juvenile Blue Crabs Callinectes Sapidus: Oral Versus Injection Exposure, And Feeding Frequency Effects, Reginald B. Blaylock, Stephen S. Curran, Jeffrey M. Lotz

Faculty Publications

The efficacy of oral versus injection exposure and the effect of feeding frequency on the transmission of white spot syndrome virus (WSSV) in cultured juvenile blue crabs Callinectes sapidus were investigated. Crabs in Group 1 (G-1, n = 48) were exposed once orally to 100 mg of WSSV-infected shrimp tissue mg^-1 of body weight (BW). The oral inoculum contained 2.6 × 10⁹ WSSV genome copies mg^-1 tissue. Group 2 (G-2, n = 46) received the same dosage once weekly for 5 wk. Group 3 (G-3, n = 12) was injected with 0.01 ml (2.6 × 10^{7 …}

Tadkb:Family Classification And A Knowledge Base Of Topologically Associating Domains, Tong Liu, Jacob Porter, Chenguang Zhao, Hao Zhu, Nan Wang, Zheng Sun, Yin-Yuan Mo, Zheng Wang

Faculty Publications

Background: Topologically associating domains (TADs) are considered the structural and functional units of the genome. However, there is a lack of an integrated resource for TADs in the literature where researchers can obtain family classifications and detailed information about TADs.

Results: We built an online knowledge base TADKB integrating knowledge for TADs in eleven cell types of human and mouse. For each TAD, TADKB provides the predicted three-dimensional (3D) structures of chromosomes and TADs, and detailed annotations about the protein-coding genes and long non-coding RNAs (lncRNAs) existent in each TAD. Besides the 3D chromosomal structures inferred by population …

Establishment Of Listeria Monocytogenes In The Gastrointestinal Tract, Morgan L. Davis, Steven C. Ricke, Janet R. Donaldson

Faculty Publications

Listeria monocytogenes is a Gram positive foodborne pathogen that can colonize the gastrointestinal tract of a number of hosts, including humans. These environments contain numerous stressors such as bile, low oxygen and acidic pH, which may impact the level of colonization and persistence of this organism within the GI tract. The ability of L. monocytogenes to establish infections and colonize the gastrointestinal tract is directly related to its ability to overcome these stressors, which is mediated by the efficient expression of several stress response mechanisms during its passage. This review will focus upon how and when this occurs and how …

Population Connectivity Of Pelagic Megafauna In The Cuba-Mexico-United States Triangle, Jay R. Rooker, Michael A. Dance, R.J. David Wells, Matthew J. Ajemian, Barbara A. Block, Michael R. Castleton, J. Marcus Drymon, Brett J. Falterman, James S. Franks, Neil Hammerschlag, Jill M. Hendon, Eric R. Hoffmayer, Richard T. Kraus, Jennifer A. Mckinney, David H. Secor, Gregory W. Stunz, John F. Walter

Faculty Publications

The timing and extent of international crossings by billfishes, tunas, and sharks in the Cuba-Mexico-United States (U.S.) triangle was investigated using electronic tagging data from eight species that resulted in >22,000 tracking days. Transnational movements of these highly mobile marine predators were pronounced with varying levels of bi- or tri-national population connectivity displayed by each species. Billfishes and tunas moved throughout the Gulf of Mexico and all species investigated (blue marlin, white marlin, Atlantic bluefin tuna, yellowfin tuna) frequently crossed international boundaries and entered the territorial waters of Cuba and/or Mexico. Certain sharks (tiger shark, scalloped hammerhead) displayed prolonged periods …

Retrieval Of Phytoplankton Pigments From Underway Spectrophotometry In The Fram Strait, Yangyang Liu, Emmanuel Boss, Alison Chase, Hongyan Xi, Xiaodong Zhang, Rüdiger Röttgers, Yanqun Pan, Astrid Bracher

Faculty Publications

Phytoplankton in the ocean are extremely diverse. The abundance of various intracellular pigments are often used to study phytoplankton physiology and ecology, and identify and quantify different phytoplankton groups. In this study, phytoplankton absorption spectra (α_ph(λ)) derived from underway flow-through AC-S measurements in the Fram Strait are combined with phytoplankton pigment measurements analyzed by high-performance liquid chromatography (HPLC) to evaluate the retrieval of various pigment concentrations at high spatial resolution. The performances of two approaches, Gaussian decomposition and the matrix inversion technique are investigated and compared. Our study is the first to apply the matrix inversion …

Dietary Intake Reporting Accuracy Of The Bridge2u Mobile Application Food Log Compared To Control Meal And Dietary Recall Methods, Jennifer Lemacks, Kristen Adams, Ashley Lovetere

Faculty Publications

Mobile technology introduces opportunity for new methods of dietary assessment. The purpose of this study was to compare the reporting accuracy of a mobile food log application and 24 h recall method to a controlled meal among a convenience sample of adults (18 years of age or older). Participants were recruited from a community/university convenience sample. Participants consumed a pre-portioned control meal, completed mobile food log entry (mfood log), and participated in a dietary recall administered by a registered dietitian (24R). Height, weight, and application use survey data were collected. Sign test, Pearson’s correlation, and descriptive analyses were conducted to …

A Scientific Name For Pacific Oysters, Brian Bayne, Marc Anglès D'Auriac, Thierry Backeljau, Peter Beninger, Pierre Boudry, Ryan B. Carnegie, Jonathan P. Davis, Ximing Guo, Dennis Hedgecock, Maureen Krause, Chris Langdon, Sylvie Lapègue, Donal Manahan, Roger Mann, Eric Powell, Sandra Shumway

Faculty Publications

No abstract provided.

Global Patterns And Drivers Of Ecosystem Functioning In Rivers And Riparian Zones, Scott D. Tiegs, David M. Costello, Mark W. Isken, Guy Woodward, Peter B. Mcintyre, Mark O. Gessner, Eric Chauvet, Natalie A. Griffiths, Alex S. Flecker, Vicenç Acuña, Ricardo Albariño, Daniel C. Allen, Cecilia Alonso, Patricio Andino, Clay Arango, Jukka Aroviita, Marcus V.M. Barbosa, Leon A. Barmuta, Denise A. Bruesewitz, Francis J. Burdon, Marcos Callisto, Cristina Canhoto, Krista A. Capps, Maria M. Castillo, Joanne Clapcott, Fanny Colas, Checo Checo Colón-Gaud, Julien Cornut, Verónica Crespo-Pérez, Wyatt F. Cross, Joseph M. Culp, Michael Danger, Olivier Dangles, Elvira De Eyto, Alison M. Derry, Veronica Díaz Villanueva, Michael M. Douglas, Arturo Elosegi, Andrea C. Encalada, Sally Entrekin, Rodrigo Espinosa, Diana Ethaiya, Verónica Ferreira, Carmen Ferriol, Kyla M. Flanagan, Tadeusz Fleituch, Jennifer J. Follstad Shah, André Frainer, Nikolai Friberg, Paul C. Frost, Erica A. Garcia, Liliana García Lago, Pavel Ernesto García Soto, Sudeep Ghate, Darren P. Giling, Alan Gilmer, José Franciso Gonçalves Jr., Rosario Karina Gonzales, Manuel A.S. Graça, Mike Grace, Hans-Peter Grossart, François Guérold, Vlad Gulis, Luiz U. Hepp, Scott Higgins, Takuo Hishi, Joseph Huddart, John Hudson, Samantha Imberger, Carlos Iñiguez-Armijos, Tomoya Iwata, David J. Janetski, Eleanor Jennings, Andrea E. Kirkwood, Aaron A. Koning, Sarian Kosten, Kevin A. Kuehn, Hjalmar Laudon, Peter R. Leavitt, Aurea L. Lemes Da Silva, Shawn G. Leroux, Carri J. Leroy, Peter J. Lisi, Richard Mackenzie, Amy M. Marcarelli, Frank O. Masese, Brendan G. Mckie, Adriana Oliveira Medeiros, Kristian Meissner, Marko Miliša, Shailendra Mishra, Yo Miyake, Ashley Moerke, Shorok Mombrikotb, Rob Mooney, Tim Moulton, Timo Muotka, Junjiro N. Negishi, Vinicius Neres-Lima, Mika L. Nieminen, Jorge Nimptsch, Jakub Ondruch, Riku Paavola, Isabel Pardo, Christopher J. Patrick, Edwin T.H.M. Peeters, Jesus Pozo, Catherine Pringle, Aaron Prussian, Estefania Quenta, Antonio Quesada, Brian Reid, John S. Richardson, Anna Rigosi, José Rincón, Geta Rîșnoveanu, Christopher T. Robinson, Lorena Rodríguez-Gallego, Todd V. Royer, James A. Rusak, Anna C. Santamans, Géza B. Selmeczy, Gelas Simiyu, Agnija Skuja, Jerzy Smykla, Kandikere R. Sridhar, Ryan Sponseller, Aaron Stoler, Christopher M. Swan, David Szlag, Franco Teixera-De Mello, Jonathan D. Tonkin, Sari Uusheimo, Allison M. Veach, Sirje Vilbaste, Lena B.M. Vought, Chiao-Ping Wang, Jackon R. Webster, Paul B. Wilson, Stefan Woelfl, Marguerite A. Xenopolous, Adam G. Yates, Chihiro Yoshimura, Catherine M. Yule, Yixin X. Zhang, Jacob A. Zwart

Faculty Publications

River ecosystems receive and process vast quantities of terrestrial organic carbon, the fate of which depends strongly on microbial activity. Variation in and controls of processing rates, however, are poorly characterized at the global scale. In response, we used a peer-sourced research network and a highly standardized carbon processing assay to conduct a global-scale field experiment in greater than 1000 river and riparian sites. We found that Earth’s biomes have distinct carbon processing signatures. Slow processing is evident across latitudes, whereas rapid rates are restricted to lower latitudes. Both the mean rate and variability decline with latitude, suggesting temperature constraints …

Hippocratic Values In An Era Of Nuclear Asymmetry: Should U.S. Public Health Prepare For Nuclear War With North Korea?, George A. Gellert

Journal of Health Ethics

Objectives: Advancements in North Korean nuclear weapons have heightened tensions and increased risk for nuclear war. U.S. public health agencies are investing resources in nuclear attack preparation. Analyses assess the impact and value of existing protective public health strategies for limited nuclear exchange.

Methods: Projections of fatality/injury from a North Korean nuclear strike within North Asia and explosive impact mapping are used to assess the potential impact of an attack on major U.S. urban centers.

Results: A nuclear strike on the 20 largest U.S. urban centers would place 38.1% of Americans at risk. With 1-3 missiles of 250 kiloton yield …

The Potential Use Of Seagrass Herbivory Patterns As An Indicator Of Herbivore Community Change After Tropical Marine Protected Area Establishment, John M. Carroll, Amber D. Stubler, Christopher M. Finelli, Bradley J. Peterson

Gulf and Caribbean Research

Throughout the Caribbean, fishing pressure has decreased the abundance of many species, including both large predators and larger-bodied herbivores. In an effort to reverse these trends and reduce harvest pressure on vulnerable fish populations, Marine Protected Areas (MPAs) have been established throughout the Caribbean. Yet, the effort to monitor fish communities, is variable, and there are MPAs where no monitoring program exists. It is possible that other metrics may be used to determine whether the impact of MPA establishment. By comparing two seagrass herbivory experiments, one pre- and one post-MPA establishment, we provide evidence that the MPA established in Discovery …

Variability In Microphytobenthos Biomass And Carbon Isotopic Values In Shallow Coastal Waters Of The Northern Gulf Of Mexico, Sharil N. Deleon, Jeffrey W. Krause, Ronald Baker

Gulf and Caribbean Research

No abstract provided.

Techniques Used To Increase Recapture Rates Of Dwarf Seahorses (Hippocampus Zosterae) In Tampa Bay: Implications For Population Estimates And Movement Patterns, Heather D. Masonjones, Emily Rose, Michael C. Masonjones

Gulf and Caribbean Research

Mark-recapture techniques were used to estimate population size and movement patterns of the Dwarf Seahorse (Hippocampus zosterae, Syngnathidae), a species native to the Gulf of Mexico and under review by the National Marine Fisheries Service (NMFS, USA) for consideration under the Endangered Species Act (ESA). Previous collection methods have failed to yield recapture rates high enough to use for population estimation, hypothesized to be a result of longer time durations between collections and large distances surveyed in previous studies. In this report, Dwarf Seahorses in Tampa Bay, Florida (USA) were sampled with a pushnet in a small, well-marked …

Comparisons Of Caribbean Spiny Lobster And Queen Conch Populations In Coastal Marine Reserves Of Belize Over 15 Years, Charles Acosta, Alyssa Frank, Kristafer Howard, Denice Robertson

Gulf and Caribbean Research

Many coastal fisheries are increasingly reliant on marine protected areas (MPAs) as a fishery management strategy. However, the efficacy of any particular MPA depends on a complex suite of factors. This study investigates whether Caribbean spiny lobster Panulirus argus and queen conch Lobatus gigas abundance, mean size, and fishery productivity changed in MPAs over 15 years of increasing effective enforcement. A before-after control-impact design was used to analyze differences between years in the same protected and fished sampling sites. Catch-per-unit-effort was higher for both species in protected than fished zones, but there were no significant changes between 2001 and 2016. …

Larsonia Pterophylla (Cnidaria, Pandeidae) Parasitic On Two Leptocephali: Paraconger Sp. (Congridae) And Callechelyini Gen. Sp. (Ophichthidae) In The Gulf Of Mexico, Matthew S. Woodstock, Charles Golightly, Danté Fenolio, Jon A. Moore

Gulf and Caribbean Research

No abstract provided.

Rapid Assessment Of Post-Hurricane Michael Impacts On A Population Of The Sea Urchin Lytechinus Variegatus In Seagrass Beds Of Eagle Harbor, Port Saint Joseph Bay, Florida, Roberta Challener, James B. Mcclintock, Raymond Czaja Jr., Christopher Pomory

Gulf and Caribbean Research

No abstract provided.

Comparison Of Nursery Methods To Strengthen Oysters For Aquaculture, Emily M. Combs, Benjamin A. Belgrad, Delbert L. Smee

Gulf and Caribbean Research

No abstract provided.

Dead Or Alive: Use Of Elemental Analysis To Determine Status Of Stranded Perinate Bottlenose Dolphins (Tursiops Truncatus), Ryanne Murray, Ruth H. Carmichael, Merri K. Collins, Mackenzie L. Russell, Alissa C. Deming

Gulf and Caribbean Research

No abstract provided.

Detection Of Adsorbed Chlordecone On Microplastics In Marine Sediments In Guadeloupe: A Preliminary Study, Fidji Sandre, Charlotte R. Dromard, Karyn Le Menach, Yolande Bouchon-Navaro, Sébastien Cordonnier, Nathalie Tapie, Hélène Budzinski, Claude Bouchon

Gulf and Caribbean Research

Plastic pollution in the oceans is recognized as a worldwide problem. Since the 1950s, the production of plastics has been increasing and the first reports of microplastics (particles < 500 μm) in the marine environment began to appear in the 1970s. These particles represent a growing environmental problem due to their dispersion in seawater and marine organisms. Additionally, microparticles in general can adsorb pollutants that will then become bioavailable to organisms by being desorbed during digestion, which could be an important pathway for the contamination of organisms. In Guadeloupe and Martinique, an organochlorine pesticide called “chlordecone” was used from 1972 to 1993 in banana plantations and this very persistent pollutant contaminates soils, rivers, and coastal marine areas and accumulates in marine foodwebs. To examine these issues, we had two goals: 1) to assess the contamination of marine sediments by microplastics surrounding Guadeloupe; and 2) to determine the ability of microplastics to adsorb chlordecone, as has been demonstrated for other organochlorine pollutants. To do so, marine sediments were collected in triplicate from 12 sites in coral reef environments around the island. Microplastics from each sample were then enumerated by size, color and shape under a binocular microscope. The results indicate that microplastics are found in all the studied sites and that their distribution could be linked to marine currents or proximity to areas of significant human activities (port activities, agglomeration, etc.). Finally, our preliminary results indicated that chlordecone could be adsorbed onto microplastics, with a concentration ranging from 0.00036—0.00173 µg/µg of microfilter.

Estimation And Comparison Of Epiphyte Loading On Holopelagic Sargassum Fluitans Collected In The North Atlantic Ocean And The Gulf Of Mexico, Sarah Shadle, Olivia Lestrade, Franziska Elmer, Frank Hernandez Jr.

Gulf and Caribbean Research

No abstract provided.

An Army Of One: Predaceous Diving Beetle Life History Stages Affect Interactions With Shared Mosquito Prey, Carmen E. Bofill, Donald A. Yee

Faculty Publications

Predators with complex life cycles often differ in their morphology, behavior, and trophic position across their ontogeny, and may thus have variable effects on shared prey. We used the predaceous diving beetle Laccophilus fasciatus rufus as our predator, whose larvae and adults often co-occur in freshwater lentic systems. As a shared prey we used early and late instar Culex quinquefasciatus, a common wetland mosquito. We found that single adult predators were more likely to consume late instar prey compared to juvenile predators, who ate early and late instar prey equally. A mixture of juvenile and adult predator stages led …

A Novel Sparse Compositional Technique Reveals Microbial Perturbations, Cameron Martino, James T. Morton, Clarisse A. Martoz, Luke R. Thompson, Anupriya Tripathi, Rob Knight, Karsten Zengler

Faculty Publications

The central aims of many host or environmental microbiome studies are to elucidate factors associated with microbial community compositions and to relate microbial features to outcomes. However, these aims are often complicated by difficulties stemming from high-dimensionality, non-normality, sparsity, and the compositional nature of microbiome data sets. A key tool in microbiome analysis is beta diversity, defined by the distances between microbial samples. Many different distance metrics have been proposed, all with varying discriminatory power on data with differing characteristics. Here, we propose a compositional beta diversity metric rooted in a centered log-ratio transformation and matrix completion called robust Aitchison …

Vector Tick Transmission Model Of Spotted Fever Rickettsiosis, Tais Berelli Saito, Jeremy Bechelli, Claire Smalley, Shahid Karim, David H. Walker

Faculty Publications

Many aspects of rickettsial infections have been characterized, including pathogenic and immune pathways and mechanisms of rickettsial survival within the vertebrate host and tick vector. However, very few studies are focused on the complex pathogen–vector–host interactions during tick feeding. Therefore, our objective was to develop a tick transmission model of the spotted fever group of rickettsial infections to study the initial events in disease development. The most appropriate strain of mouse was identified for evaluation as a transmission model, and the course of infection, bacterial levels, histopathologic changes, and antibody response during tick transmission in mice infested with Amblyomma maculatum …

Periphytic Algae Decouple Fungal Activity From Leaf Litter Decomposition Via Negative Priming, Halvor M. Halvorson, Jacob R. Barry, Matthew B. Lodato, Robert H. Findlay, Steven N. Francoeur, Kevin A. Kuehn

Faculty Publications

1. Well‐documented in terrestrial settings, priming effects describe stimulated heterotrophic microbial activity and decomposition of recalcitrant carbon by additions of labile carbon. In aquatic settings, algae produce labile exudates which may elicit priming during organic matter decomposition, yet the directions and mechanisms of aquatic priming effects remain poorly tested.

2. We tested algal‐induced priming during decomposition of two leaf species of contrasting recalcitrance, Liriodendron tulipifera and Quercus nigra, in experimental streams under light or dark conditions. We measured litter‐associated algal, bacterial, and fungal biomass and activity, stoichiometry, and litter decomposition rates over 43 days.

3. Light increased algal biomass and …

The Purr Of The Lionfish: Sound And Behavioral Context Of Wild Lionfish In The Greater Caribbean, Michelle T. Schärer-Umpierre, Carlos Zayas, Richard S. Appeldoorn, Evan Tuohy, Jack C. Olson, Jessica A. Keller, Alejandro Acosta

Gulf and Caribbean Research

Passive acoustic technology has become a useful and cost-effective method to collect data with very high temporal resolution that can be used to detect the presence, distribution, and remotely monitor soniferous marine biodiversity. In order to maximize the potential of bioacoustic and soundscape research in the oceans, understanding the association between the different realms of sound sources, species-specific calls and behavioral context of sound production are fundamental. A previously unknown vocalization was associated with a behavioral display of lionfish (Pterois spp.) by recordings with synchronous audio and video at deep coral reefs in both Puerto Rico and the Florida …

Seagrass Ecosystems: A Career-Long Quest To Understand Their Inner Workings, Kenneth L. Heck Jr

Gulf and Caribbean Research

Four decades of research findings associates on the ecology of seagrasses and their animal and plant associates are described here, along with some of the major changes and advances that have taken place in our understanding of the inner workings of these amazingly productive and diverse ecosystems. Of primary importance are shifts in the recognition of: 1) the importance of the nursery role of seagrasses and how it can be quantified; 2) the importance of direct herbivory in the trophic ecology of seagrass-dominated ecosystems; and 3) the primacy of consumer effects in determining the abundance of algal epiphytes that colonize …

Differential Expression Of Genes Related To Innate Immune Responses In Ex Vivo Spinal Cord And Cerebellar Slice Cultures Infected With West Nile Virus, Parminder J.S. Vig, Deyin Lu, Amber M. Paul, Ram Kuwar, Maria Lopez, Dobrivoje S. Stokic, A. Arturo Leis, Michael R. Garrett, Fengwei Bai

Faculty Publications

West Nile virus (WNV) infection results in a spectrum of neurological symptoms, ranging from a benign fever to severe WNV neuroinvasive disease with high mortality. Many who recover from WNV neuroinvasive infection present with long-term deficits, including weakness, fatigue, and cognitive problems. While neurons are a main target of WNV, other cell types, especially astrocytes, play an important role in promoting WNV-mediated central nervous system (CNS) damage. Conversely, it has been shown that cultured primary astrocytes secrete high levels of interferons (IFNs) immediately after WNV exposure to protect neighboring astrocytes, as well as neurons. However, how intrinsic responses to WNV …

Micrat: A Novel Algorithm For Inferring Gene Regulatory Networks Using Time Series Gene Expression Data, Bei Yang, Yaohui Xu, Andrew Maxwell, Wonryull Koh, Ping Gong, Chaoyang Zhang

Faculty Publications

Background: Reconstruction of gene regulatory networks (GRNs), also known as reverse engineering of GRNs, aims to infer the potential regulation relationships between genes. With the development of biotechnology, such as gene chip microarray and RNA-sequencing, the high-throughput data generated provide us with more opportunities to infer the gene-gene interaction relationships using gene expression data and hence understand the underlying mechanism of biological processes. Gene regulatory networks are known to exhibit a multiplicity of interaction mechanisms which include functional and non-functional, and linear and non-linear relationships. Meanwhile, the regulatory interactions between genes and gene products are not spontaneous since various …

Rhizosphere Microbial Communities Of Spartina Alternifloa And Juncus Roemerianus From Restored And Natural Tidal Marshes On Deer Island, Mississippi, Olga Mavrodi, Carina M. Jung, Jed O. Eberly, Samuel Hendry, Sanchirmaa Namijilsuren, Patrick D. Biber, Karl J. Indest, Dmitri V. Mavrodi

Faculty Publications

The U. S. Gulf of Mexico is experiencing a dramatic increase in tidal marsh restoration actions, which involves planting coastal areas with smooth cordgrass (Spartina alterniflora) and black needlerush (Juncus roemerianus) for erosion control and to provide habitat for fish and wildlife. It can take decades for sedimentary cycles in restored marshes to approach reference conditions, and the contribution of the sediment microbial communities to these processes is poorly elucidated. In this study, we addressed this gap by comparing rhizosphere microbiomes of S. alterniflora and J. roemerianus from two restored marshes and a natural reference marsh located at Deer Island, …

Stress Response Mechanisms Of Listeria Monocytogenes, Oindrila Paul

Dissertations

Listeria monocytogenes is a Gram-positive, facultative intracellular food-borne pathogen that causes the disease listeriosis. In order to establish an infection, L. monocytogenes must survive multiple stressors encountered within the gastrointestinal tract, including alterations in pH, bile, salt, and oxygen availability. This dissertation focused on understanding the stress response of L. monocytogenes to bile. Bile acts as a bactericidal agent by disrupting the membrane integrity and causing instability to macromolecules like DNA. Thus, a bacterium must be able to maintain its membrane architecture, composition and integrity.

Often times, bacteria will modulate their fatty acid composition in the membrane to cope with …