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Articles 601 - 630 of 10915
Full-Text Articles in Life Sciences
On The Border Of Extinction And Speciation, Polygala Seyfegoluensis (Polygalaceae), A New Species From Marshy Habitat, Central Türkiye: Under The Threat Of Climate Change, Water Retreat, And Subsequent Degradation, Ali̇ Aslan Dönmez, Zübeyde Uğurlu Aydin, İbrahi̇m Sirri Yüzbaşioğlu
On The Border Of Extinction And Speciation, Polygala Seyfegoluensis (Polygalaceae), A New Species From Marshy Habitat, Central Türkiye: Under The Threat Of Climate Change, Water Retreat, And Subsequent Degradation, Ali̇ Aslan Dönmez, Zübeyde Uğurlu Aydin, İbrahi̇m Sirri Yüzbaşioğlu
Turkish Journal of Botany
Polygala seyfegoluensis Dönmez, Uğurlu & Yüzb. (Polygalaceae) is herein described and illustrated as a new species from Kırşehir Province around Seyfe Lake in Central Türkiye. This new species is similar to P. pruinosa and P. supina is distinctly characterized by its prostrate habit, nearly glabrous and smaller flower parts, and an unwinged capsule. A phylogenetic analysis was conducted to show the placement of the new species within selected Polygala taxa using the trnL-F and rbcL markers. Based on the field observation, an evolutionary scenario is proposed for the new species under the driving forces of climate change, the shrinking of …
Dynamics Of Meiobenthic Fauna In A Tropical Sandy Coast (Chennai, Bay Of Bengal) With Reference To The Physicochemical Parameters, Madhavan Kesavaraj, Md Anwar Nawaz, Zahara Tasneem, Mohammed Asjad Shams Tabrez, Kareem Altaff, Mohamed Saquib Naveed
Dynamics Of Meiobenthic Fauna In A Tropical Sandy Coast (Chennai, Bay Of Bengal) With Reference To The Physicochemical Parameters, Madhavan Kesavaraj, Md Anwar Nawaz, Zahara Tasneem, Mohammed Asjad Shams Tabrez, Kareem Altaff, Mohamed Saquib Naveed
Turkish Journal of Zoology
The term “meiobenthos” refers to a diverse community of organisms inhabiting the interstitial spaces between sand grains retained on sieve sizes ranging between 38 to 500 μm. This study investigates the diversity and density of meiobenthic communities across five locations along the Chennai coast. We examined the dominant meiobenthic groups, with nematodes exhibiting high dominance at Napier station (288.6 ± 91.07 ind.10cm²) and harpacticoids dominating at Marina station (449.88 ± 264.3 ind.10cm²). To establish the relationship between meiobenthic organisms and environmental parameters, we analyzed seven physicochemical factors throughout the study period. The results indicate a negative correlation between ammonia, nitrate, …
Coral Cover Percentage And Health Condition In Tioman Island Marine Protected Area, Pahang, Malaysia, Nur Addawiah Mohamad Rodzi, Mohamed Fahmy Yusof, Zaidi Che Cob
Coral Cover Percentage And Health Condition In Tioman Island Marine Protected Area, Pahang, Malaysia, Nur Addawiah Mohamad Rodzi, Mohamed Fahmy Yusof, Zaidi Che Cob
Turkish Journal of Zoology
Continuous evaluation and monitoring of coral percentage cover and health status is critical for enhancing coral reef resilience management. The present study aimed to determine the coverage and coral status at important sites of Tioman Island Marine Park, which include Renggis Island, Tiong Point and Tekek. Surveillance video recording and in situ observation were carried out using the Coral Video Transect (CVT) method, which were analyzed using the Coral Point Count with Excel extension (CPCe) software. The overall health status for the study area was considered as “fair” with 41.61% ± 4.46% of mean live coral coverage. Among the stations …
An Update On The Phylogeny And Biogeographical History Of Rhipicephalus Sanguineus Complex, Olcay Heki̇moğlu
An Update On The Phylogeny And Biogeographical History Of Rhipicephalus Sanguineus Complex, Olcay Heki̇moğlu
Turkish Journal of Zoology
Rhipicephalus sanguineus complex is among the most studied hard tick species due to its worldwide distribution and its ability to transmit several pathogens. In this study, new local data and recent global findings were used to reevaluate the evolutionary history and phylogeny of the R. sanguineus complex. Seventy-nine samples of Rhipicephalus sp., which were collected from 32 different localities of Türkiye and one locality from Northern Cyprus, were analyzed using two mitochondrial (mt 16S rDNA, mt 12S rDNA) and one nuclear (ITS2) markers. The findings from phylogenetic trees indicate the presence of a third genetically distinct lineage of R. sanguineus …
The Range Dynamics Of A Cactophilic Drosophila Species Under Climate Change Scenarios, Banu Şebnem Önder, Utku Perktaş
The Range Dynamics Of A Cactophilic Drosophila Species Under Climate Change Scenarios, Banu Şebnem Önder, Utku Perktaş
Turkish Journal of Zoology
In this study, we evaluated the historical demography of a cactophilic Drosophila species (Drosophila gouveai) based on previously published mitochondrial DNA (mtDNA) data ecological niche modelling. We particularly aimed to test the effect of climate change on the historical demography of D. gouveai during the late Quaternary and the future of the species. For this, we also modelled its host cacti species in its distribution range to reach a more robust biogeographic conclusion. Our results indicate that D. gouveai was as sensitive to climate change as its hosts were. This species experienced an almost complete range shift, range contraction after …
Diet And Reproductive Outputs Of Common Barn-Owl (Tyto Alba) During The Common Vole (Microtus Arvalis) Outbreak And Crash, Gyozo F. Horvath, Adrienn Horváth
Diet And Reproductive Outputs Of Common Barn-Owl (Tyto Alba) During The Common Vole (Microtus Arvalis) Outbreak And Crash, Gyozo F. Horvath, Adrienn Horváth
Turkish Journal of Zoology
In this paper, we investigated the relationship between the breeding parameters and food composition of the common barnowl (Tyto alba) comparing the outbreak and subsequent crash periods of the common vole (Microtus arvalis) as the barn owl’s main prey. For the analyses, data of 29 (2014 outbreak: 6, 2016 crash: 8; 2019 outbreak: 7, 2021 crash: 7) breeding pairs of barn owls were selected. First, we examined the differences between the breeding parameters (clutch size, number of hatchlings and fledglings), the main and alternative prey taxa (common vole and Apodemus genus), the two derived indices (trophic level index, Microtinae/Murinae ratio) …
Vigilance Behavior Of Common Crane Grus Grus In Flocks During Spring, Summer, And Autumn, Kristina Kondrakova, Alexander Sharikov
Vigilance Behavior Of Common Crane Grus Grus In Flocks During Spring, Summer, And Autumn, Kristina Kondrakova, Alexander Sharikov
Turkish Journal of Zoology
Vigilance is a key behavioral element aimed to detect potential predators or rivals. In this study, we examined the vigilance levels of common cranes that exhibit flocking behavior during the spring, summer, and autumn seasons. We considered the influence of both social (age, presence of offspring, and flock size) and environmental factors (habitat type, time of day, and study period). Parents allocated more time for vigilance than nonparents and juveniles. The alertness of nonparents was lower in flocks of size 51–150 individuals compared to flocks under 50 and over 150 birds. Juveniles increased their vigilance at the end of the …
Can Wildlife Mortality On A Local Road Tell Something General? An Answer From A Protected Area In South-Western Romania, Diana Cupşa, Severus Daniel Covaciu Marcov, Robert Liviu Mihai Rengle, Amalia Raluca Dumbrava, Sára Ferenti, Adriana Petruş Vancea
Can Wildlife Mortality On A Local Road Tell Something General? An Answer From A Protected Area In South-Western Romania, Diana Cupşa, Severus Daniel Covaciu Marcov, Robert Liviu Mihai Rengle, Amalia Raluca Dumbrava, Sára Ferenti, Adriana Petruş Vancea
Turkish Journal of Zoology
Between June 2020 and May 2021, we studied the fauna road mortality on a recently asphalted local road in a protected area in southwestern Romania (Iron Gates Natural Park–IGNP). Despite our expectation of reduced road mortality because of the very low traffic (3.97 cars/hour), numerous animals belonging to a high number of taxa were killed. Animals were killed throughout the entire year, even amphibians in the winter months, which normally should hibernate in that period. Road mortality differences between periods and sectors were obvious. Plant assemblages near the road influence the composition and intensity of road mortality. Diverse habitats near …
On The Oviposition Of Homonota Aff. Darwinii In The Puna Region Of The Central Andes Of Argentina, Franco Valdez Ovallez, Rodrigo Gómez Alés, Rodrigo Nieva Cocilio, Tomás Martínez, Juan Carlos Acosta, José Villavicencio, Graciela Blanco
On The Oviposition Of Homonota Aff. Darwinii In The Puna Region Of The Central Andes Of Argentina, Franco Valdez Ovallez, Rodrigo Gómez Alés, Rodrigo Nieva Cocilio, Tomás Martínez, Juan Carlos Acosta, José Villavicencio, Graciela Blanco
Turkish Journal of Zoology
Communal nest egg-laying refers to females laying their eggs with those of their conspecifics under or within artificial or natural structures. Homonota aff. darwinii is a recently discovered species that has not yet been formally described. The objective of this work is to characterise the oviposition of this species in the Puna region in the Central Andes of Argentina. We recorded the type and surface of the rocks where the eggs were laid, the temperature of the substrate, and the temperature of the rock surface facing the substrate. In addition, we recorded the daily temperature variation that a randomly selected …
The Association Between Clai Polymorphism And Hygienic Behavior In Apis Mellifera, İnci̇ Şahi̇n Negi̇ş, Mustafa Ki̇bar, İbrahi̇m Ayteki̇n
The Association Between Clai Polymorphism And Hygienic Behavior In Apis Mellifera, İnci̇ Şahi̇n Negi̇ş, Mustafa Ki̇bar, İbrahi̇m Ayteki̇n
Turkish Journal of Zoology
Hygienic behavior represents one of the most prominent disease resistance mechanisms developed by honeybees. This behavior is known to be influenced by the genotype and environmental factors. Therefore, this study aimed to investigate the effect of SNP-8 polymorphism and environmental factors on hygienic behavior in different Apis mellifera breeds. A total of fourteen colonies and 148 bees from seven different bee breeds were used for the Pin-killed Brood Assay (PKB) test and PCR-RFLP analysis, respectively. The PKB assay revealed a wide range of hygienic behavior, spanning from 68% to 100% across the fourteen colonies. The frequencies of the H (High) …
Molecular Characterization Of Fecundity-Related Gene Regions In Some Of Türkiye’S Native Sheep Breeds, Ramazan Aymaz, Fulya Özdi̇l, Yalçın Yaman
Molecular Characterization Of Fecundity-Related Gene Regions In Some Of Türkiye’S Native Sheep Breeds, Ramazan Aymaz, Fulya Özdi̇l, Yalçın Yaman
Turkish Journal of Veterinary & Animal Sciences
In this study, the BMP15 and GDF9 gene regions were examined through DNA sequencing in some native sheep breeds of Türkiye (Kıvırcık, Karacabey Merino, Chios, Gökçeada, Çine Çaparı, Awassi, and Karakacan). In the BMP15 exon 2 region, two single nucleotide polymorphisms (SNPs) were identified: one synonymous SNP, P248P (proline/proline), and one nonsynonymous SNP, L251P (leucine/proline), resulting in a missense mutation. In the GDF9 exon 1 region, only a nonsynonymous SNP, R87H (histidine/ arginine), was found. In the GDF9 exon 2 region, four SNPs were identified: two nonsynonymous SNPs, E241K (glutamate/lysine) and V332I (valine/isoleucine), and two synonymous SNPs, L159L (leucine/leucine) and …
Behavioral Activity Budget Of Grower Beetal Kids Offered Total Mixed Ration Under Stall-Fed System, Priya Dhattarwal, Mandeep Singla, Sandeep Kaswan, Ravinder Singh Grewal, Neeraj Kashyap, Dalpat Singh Malik
Behavioral Activity Budget Of Grower Beetal Kids Offered Total Mixed Ration Under Stall-Fed System, Priya Dhattarwal, Mandeep Singla, Sandeep Kaswan, Ravinder Singh Grewal, Neeraj Kashyap, Dalpat Singh Malik
Turkish Journal of Veterinary & Animal Sciences
This study investigates the behavioral activities of grower Beetal kids fed in a conventional method-control group manner orgiven total mixed ration (TMR) (i.e. hay-based - T1 and green fodder-based - T2). Twenty-four weaned Beetal kids were enrolled andrandomly distributed into 3 groups based on their body weight, sex, and age. Behavioral observations were recorded 30 min after givingexperimental ration to the kids using the scan sampling method for 1 h, which inferred time spent eating normally, eating with forelegson the cage, and eating with forelegs on the feeders; standing idle and urination were significantly higher in the control group than …
The Stereological And Morphometrical Investigation Of Pars Lumbalis Of The Spinal Cord Innew Zealand Rabbit, Berna Duman, İftar Gürbüz
The Stereological And Morphometrical Investigation Of Pars Lumbalis Of The Spinal Cord Innew Zealand Rabbit, Berna Duman, İftar Gürbüz
Turkish Journal of Veterinary & Animal Sciences
In the study, 12 (6 females, 6 males) healthy adult New Zealand rabbits were used to examine the morphometrical andstereological values. White matter, gray matter and total segment volume of the segments in the pars lumbalis were calculated byCavalieri’s principle. The findings were grouped according to sexand statistically evaluated. As a result, 38% of the length of the spinalcord in rabbits belonged to the pars lumbalis. The morphometric parameters were not statistically different between male and femalerabbits (p > 0.05). The segment with the biggest volume was L5. White matter’s greatest volume was the L4 segment. The volume of graymatter was …
Predictors On Mental Health Of Owning Cats And Dogs, Çağri Çağlar Si̇nmez, Ahmet Meti̇n, Emre Tüfekçi̇, Ali̇ İlteri̇ş Aykun, Vehbi̇ Güneş
Predictors On Mental Health Of Owning Cats And Dogs, Çağri Çağlar Si̇nmez, Ahmet Meti̇n, Emre Tüfekçi̇, Ali̇ İlteri̇ş Aykun, Vehbi̇ Güneş
Turkish Journal of Veterinary & Animal Sciences
The common consensus is that owning pets affects human health positively. However, the effects of owning pets on mental health are still controversial. Therefore, the present study aimed to determine the possible associated with depression, anxiety, stress, and owning cats and dogs in Türkiye. Additionally, the potential impact of personality traits on this relationship was examined. This study included 636 participants, of whom 52% were female (Mage = 33.02, SD = 15.78). Data was obtained by using a DASS-21 and the Big Five Personality Inventory. The findings revealed that owning cats and dogs was a promotive factor against depression (DE) …
Identification Of Dermatophytes And Comparative Efficacy Of Topical Antifungals Fortreating Canine Dermatophytosis, Arun Prakash Vadakkoot, Rathish Ramachandran Latha, Neeraja Eramthottil, Lijo John, Bipin Kuriyedath Chitharalil, Deepa Padinjare Meleppat
Identification Of Dermatophytes And Comparative Efficacy Of Topical Antifungals Fortreating Canine Dermatophytosis, Arun Prakash Vadakkoot, Rathish Ramachandran Latha, Neeraja Eramthottil, Lijo John, Bipin Kuriyedath Chitharalil, Deepa Padinjare Meleppat
Turkish Journal of Veterinary & Animal Sciences
Dermatophytosis is a potentially zoonotic superficial skin infection caused by keratinophilic fungi. Identification ofdermatophytes aids in understanding the epidemiology of infections and finding out better treatment modalities. The study aimed toidentify dermatophytes in dogs and compare the effectiveness of three different topical drugs for treating dermatophytosis. Molecularidentification of dermatophyte isolates obtained on culturing was done by restriction fragment length polymorphism of the ampliconobtained by polymerase chain reaction of the Internal Transcribed Spacer (ITS) region of the recombinant DNA. Thirty of the positivecases were divided into three groups, Group I was treated with shampoo containing 2% each of miconazole chlorhexidine, Group …
Determining The Effects Of Different Bypass Fat Supplementation On Performance, Milkyield, And Milk Composition Of Anatolian Buffaloes, Sezer Öz, Seher Küçükersan
Determining The Effects Of Different Bypass Fat Supplementation On Performance, Milkyield, And Milk Composition Of Anatolian Buffaloes, Sezer Öz, Seher Küçükersan
Turkish Journal of Veterinary & Animal Sciences
This study aimed to explore the effects of animal bypass fat (ABF) and palm bypass fat (PBF) added to the rations of Anatolianbuffaloes on dry matter consumption, feed conversion ratio, milk yield, some milk components, and parameters. A total of 21 heads ofbuffalo in the early lactation period; milk yield averages, lactation periods, lactation numbers, live weights, and ages were selected anddivided into three experimental groups, each consisting of 7 buffaloes. The experiment was conducted according to the crossover trialpattern. There was no statistically significant difference between the groups in terms of dry matter consumption and feed conversionratio (p > 0.05). …
Comparison Of Nonlinear Models For Predicting Live Weight Growth Curves In Lambproduction Of Kıvırcık And Karacabey Merino, Vasfi̇ye Kader Esen, Orhan Karadağ, Cengi̇z Elmaci, Seli̇m Esen
Comparison Of Nonlinear Models For Predicting Live Weight Growth Curves In Lambproduction Of Kıvırcık And Karacabey Merino, Vasfi̇ye Kader Esen, Orhan Karadağ, Cengi̇z Elmaci, Seli̇m Esen
Turkish Journal of Veterinary & Animal Sciences
To achieve sustainable lamb production, it is crucial to determine the optimal slaughter age for maximum economic efficiencyand have a comprehensive understanding of breed characteristics. This study focuses on evaluating different nonlinear models todetermine the optimal slaughter age for Karacabey Merino and Kıvırcık lambs, renowned for their early development and superiormeat quality, respectively. The dataset comprised age-related live weight data from 98 lambs, including 36 female and 15 male Kıvırcıklambs, as well as 33 female and 14 male Karacabey Merino lambs. Six models, namely, negative exponential, Brody, Gompertz, logistic,Bertalanffy, and Richards were utilized to analyze the data. The model parameters …
Determination Of Yield Nutrient Contents And In Vitro Digestibility Of Some Triticale Varieties Harvested At Different Maturity Stages, Şevket Evci̇, Kami̇l Kara, Mehmet Demi̇rci̇
Determination Of Yield Nutrient Contents And In Vitro Digestibility Of Some Triticale Varieties Harvested At Different Maturity Stages, Şevket Evci̇, Kami̇l Kara, Mehmet Demi̇rci̇
Turkish Journal of Veterinary & Animal Sciences
The aim of this study was to determine the contribution of growth performance, nutrient content and digestibility of different triticale varieties to ruminant diets and to indirectly assist farmers in feed production. The experiment utilized 5 triticale varieties. The study was designed as a randomized complete block design with split plots and 3 replications. The digestibility values were determined in vitro after 48 hours of incubation using the Daisy Ankom® digester. Rumen liquid was obtained from dairy cows slaughtered at the 'Yeşil Vadi Et Entegre' facility. Nutrient values, in vitro dry matter digestibility, and yield traits of forages were determined. …
Classification Of Colon Cancer Patients Into Consensus Molecular Subtypes Using Support Vector Machines, Necla Koçhan, Baris Emre Dayanc
Classification Of Colon Cancer Patients Into Consensus Molecular Subtypes Using Support Vector Machines, Necla Koçhan, Baris Emre Dayanc
Turkish Journal of Biology
Background/aim: The molecular heterogeneity of colon cancer has made classification of tumors a requirement for effective treatment. One of the approaches for molecular subtyping of colon cancer patients is the Consensus Molecular Subtypes (CMS) developed by the Colorectal Cancer Subtyping Consortium (CRCSC). CMS-specific RNA-Seq dependent classification approaches are recent with relatively low sensitivity and specificity. In this study, we aimed to classify patients into CMS groups using RNA-seq profiles. Materials and methods: We first identified subtype specific and survival associated genes using Fuzzy C-Means (FCM) algorithm and log-rank test. Then we classified patients using Support Vector Machines with Backward Elimination …
Compcorona: A Web Application For Comparative Transcriptome Analyses Ofcoronaviruses Reveals Sars-Cov-2-Specific Host Response, Rana Sali̇hoğlu, Fati̇h Saraçoğlu, Mustafa Si̇bai̇, Tali̇p Zengi̇n, Başak Abak Masud, Onur Karasoy, Tuğba Önal Süzek
Compcorona: A Web Application For Comparative Transcriptome Analyses Ofcoronaviruses Reveals Sars-Cov-2-Specific Host Response, Rana Sali̇hoğlu, Fati̇h Saraçoğlu, Mustafa Si̇bai̇, Tali̇p Zengi̇n, Başak Abak Masud, Onur Karasoy, Tuğba Önal Süzek
Turkish Journal of Biology
Background/aim: Understanding the mechanism of host transcriptomic response to infection by the SARS-CoV-2 virus is crucial, especially for patients suffering from long-term effects of COVID-19, such as long COVID or pericarditis inflammation, potentially linked to side effects of the SARS-CoV-2 spike proteins. We conducted comprehensive transcriptome and enrichment analyses on lung and peripheral blood mononuclear cells (PBMCs) infected with SARS-CoV-2, as well as on SARS-CoV and MERS-CoV, to uncover shared pathways and elucidate their common disease progression and viral replication mechanisms. Materials and methods: We developed CompCorona, the first interactive online tool for visualizing gene response variance among the family …
Svm-Do: Identification Of Tumor-Discriminating Mrna Signatures Via Support Vectormachines Supported By Disease Ontology, Mustafa Erhan Özer, Pemra Özbek Sarica, Kazim Yalçin Arğa
Svm-Do: Identification Of Tumor-Discriminating Mrna Signatures Via Support Vectormachines Supported By Disease Ontology, Mustafa Erhan Özer, Pemra Özbek Sarica, Kazim Yalçin Arğa
Turkish Journal of Biology
Background/aim: The complicated nature of tumor formation makes it difficult to identify discriminatory genes. Recently, transcriptome-based supervised classification methods using support vector machines (SVMs) have become popular in this field. However, the inclusion of less significant variables in the construction of classification models can lead to misclassification. To improve model performance, feature selection methods such as enrichment analysis can be used to extract useful variable sets. The detection of genes that can discriminate between normal and tumor samples in the association of cancer and disease remains an area of limited information. We therefore aimed to discover novel and practical sets …
Stemnesscore: An R Package To Estimate The Stemness Of Glioma Cancer Cells At Single-Cell Resolution, Necla Koçhan, Yavuz Oktay, Gökhan Karakülah
Stemnesscore: An R Package To Estimate The Stemness Of Glioma Cancer Cells At Single-Cell Resolution, Necla Koçhan, Yavuz Oktay, Gökhan Karakülah
Turkish Journal of Biology
Background/aim: Glioblastoma is the most heterogeneous and the most difficult-to-treat type of brain tumor and one of the deadliest among all cancers. The high plasticity of glioma cancer stem cells and the resistance they develop against multiple modalities of therapy, along with their high heterogeneity, are the main challenges faced during treatment of glioblastoma. Therefore, a better understanding of the stemness characteristics of glioblastoma cells is needed. With the development of various single-cell technologies and increasing applications of machine learning, indices based on transcriptomic and/or epigenomic data have been developed to quantitatively measure cellular states and stemness. In this study, …
Suma: A Lightweight Machine Learning Model Powered Shared Nearest Neighbour Based Clustering Application Interface Of Scrna-Seq, Hamza Umut Karakurt, Pınar Pir
Suma: A Lightweight Machine Learning Model Powered Shared Nearest Neighbour Based Clustering Application Interface Of Scrna-Seq, Hamza Umut Karakurt, Pınar Pir
Turkish Journal of Biology
Background/aim: Single-cell transcriptomics (scRNA-Seq) explores cellular diversity at the gene expression level. Due to the inherent sparsity and noise in scRNA-Seq data and the uncertainty on the types of sequenced cells, effective clustering and cell type annotation are essential. The graph-based clustering of scRNA-Seq data is a simple yet powerful approach which presents data as a “shared nearest neighbour” graph and clusters the cells using graph clustering algorithms. These algorithms are dependent on several user-defined parameters. Here we present SUMA, a lightweight tool that uses a random forest model to predict the optimum number of neighbours to have the optimum …
Physicochemical Differences Between Camelid Single-Domain Antibodies And Mammalian Antibodies, Nazli Eda Eski̇er, Doğa Eski̇er, Esi̇n Fi̇ruzan, Si̇bel Kalyoncu
Physicochemical Differences Between Camelid Single-Domain Antibodies And Mammalian Antibodies, Nazli Eda Eski̇er, Doğa Eski̇er, Esi̇n Fi̇ruzan, Si̇bel Kalyoncu
Turkish Journal of Biology
Background/aim: In recent years, single-domain antibodies, also known as nanobodies, have emerged as an alternative to full immunoglobulin Gs (IgGs), due to their various advantages including increased solubility, faster clearance, and cheaper production. Nanobodies are generally derived from the variable domain of the camelid heavy-chain-only immunoglobulin Gs (hcIgGs). Due to the high sequence homology between variable heavy chains of camelids (VHHs) and humans (VHs), hcIgGs are ideal candidates for nanobody development. However, further examination is needed to understand the structural differences between VHs and VHHs. This analysis is essential for nanobody engineering to mitigate potential immunogenicity while preserving stability, functionality, …
Deep Learning In Bioinformatics, Malik Yousef, Jens Allmer
Deep Learning In Bioinformatics, Malik Yousef, Jens Allmer
Turkish Journal of Biology
Deep learning is a powerful machine learning technique that can learn from large amounts of data using multiple layers of artificial neural networks. This paper reviews some applications of deep learning in bioinformatics, a field that deals with analyzing and interpreting biological data. We first introduce the basic concepts of deep learning and then survey the recent advances and challenges of applying deep learning to various bioinformatics problems, such as genome sequencing, gene expression analysis, protein structure prediction, drug discovery, and disease diagnosis. We also discuss future directions and opportunities for deep learning in bioinformatics. We aim to provide an …
Determining The Quality Of Sugar Beet Pulp, Lenox, And Ryegrass Silages Used In Feeding Dairy Cattle, In Comparison To Corn Silage, Fatma Özkan, Suphi̇ Deni̇z
Determining The Quality Of Sugar Beet Pulp, Lenox, And Ryegrass Silages Used In Feeding Dairy Cattle, In Comparison To Corn Silage, Fatma Özkan, Suphi̇ Deni̇z
Turkish Journal of Veterinary & Animal Sciences
This study was carried out to determine the quality of sugar beet pulp (Beta vulgaris L.), lenox (Brassica rapa L.), and ryegrass (Lolium multiflorium cv. caramba) silages used in feeding dairy cattle, in comparison to corn silage. Whole corn was harvested at the dough stage, lenox was harvested at the end of flowering, and ryegrass was harvested at the beginning of spike. No additives were added to the corn silage, but 5% molasses was added to the sugar beet pulp, ryegrass, and lenox silages that have low levels of easily degradable sugar. Additionally, 5% sainfoin was added to the sugar …
Effect Of Thermo-Insulated Kid Hutch On Location Preference, Growth Performance, And Blood Haemato-Biochemical Indices Of Winter-Born Goat Kids (Capra Hircus), Ajoy Das, Dilip Kumar Mandal, Asish Debbarma, Muthupalani Karunakaran, Anupam Chatterjee, Debajyoti Sarkar
Effect Of Thermo-Insulated Kid Hutch On Location Preference, Growth Performance, And Blood Haemato-Biochemical Indices Of Winter-Born Goat Kids (Capra Hircus), Ajoy Das, Dilip Kumar Mandal, Asish Debbarma, Muthupalani Karunakaran, Anupam Chatterjee, Debajyoti Sarkar
Turkish Journal of Veterinary & Animal Sciences
This study assessed the effect of thermo-insulated kid hutch (TIKH) on location preference, body surface temperature, growth performance, and blood haemato-biochemical indices of winter-born Black Bengal goat kids. Does were maintained in the same shed, born kids (n = 12) were divided into two groups along with mothers to begin experiments from day 1 of birth. The treatment group (TIKH) of kids was given a TIKH to which kids had free access, but not the adults. However, in the control group (CONT) kids were reared without TIKH. The floor surface temperature of TIKH was significantly (p < 0.05) higher at night as compared to goat shed in December (4.28%), January (3.98%), and February (7.72%). The interior roof surface of TIKH had 25.12%, 33.55%, 31.85%, 10.99%, and 4.37% higher (p < 0.01) temperatures at night compared to the roof surface temperature of the goat shed in December, January, February, March, and April, respectively. The presence of kids inside the TIKH at the age of 1–15 days was the greatest in morning (80.5%) and evening (72.2%). Between the ages of 16–-60 days, the preference of kids for the TIKH varied from 69.2% to 54.2% in the morning and from 70.0% to 66.7% in the evening. However, at the age of 61–75 days, kids’ preference for TIKH gradually declined in the morning (11.6%) and evening (19.9%) due to the increased inside temperature. Kids weaning weight was 23.25% higher (p < 0.05) in the TIKH group as compared to that of CONT. The average daily gain (0–30 days) was higher (41.34%; p < 0.05) in kids in the TIKH compared to the CONT shed. The haemato-biochemical profiles of kids were similar in both groups except for blood serum glucose, which was greater (p < 0.05) in kids of the TIKH than that of CONT shed. In conclusion, the provision of TIKH improved the growth and overall performance of winter-born Black Bengal goat kids during pre and postweaning periods.
Investigation Of Three Single-Nucleotide Polymorphisms (1252 G>A, 2534 G>A, And 2569 T>C) Of The Mbl1 Gene In Anatolian Buffaloes, Esma Gamze Aksel, Bi̇lal Akyüz
Investigation Of Three Single-Nucleotide Polymorphisms (1252 G>A, 2534 G>A, And 2569 T>C) Of The Mbl1 Gene In Anatolian Buffaloes, Esma Gamze Aksel, Bi̇lal Akyüz
Turkish Journal of Veterinary & Animal Sciences
It has been reported that since the MBL gene is involved in the first step of infection and inflammation processes, it may be associated with susceptibility to bacterial and viral diseases in living organisms. In this study, it was aimed to determine the genotypic variation of Anatolian buffaloes in terms of three (1252G>A, 2534 G>A, and 2569 T>C) single nucleotide polymorphisms (SNPs) within the MBL-1 gene. For this purpose, 103 Anatolian buffaloes were genotyped for relevant SNPs by PCR-RFLP process. The allele and genotype frequencies of the examined samples were determined, and the population was examined for …
Water Buffalo Social Networks During Their Activities On Pasture Under The Rain, Eleni Tsiobani, Maria Yiakoulaki, Nikolaos Hasanagas, Ioannis Antoniou
Water Buffalo Social Networks During Their Activities On Pasture Under The Rain, Eleni Tsiobani, Maria Yiakoulaki, Nikolaos Hasanagas, Ioannis Antoniou
Turkish Journal of Veterinary & Animal Sciences
Water buffaloes exhibit various social structures during their activities on pasture, but the impact of abiotic factors (i.e. rainfall) on these structures remains unknown. While existing research has provided evidence concerning the effect of weather conditions on grazing animals’ behavior, they have not examined how animals differentiate their social organization within the herd during their activities on pasture under the rainfall. This study utilized social network analysis to construct, depict, and analyze the proximity networks among buffaloes in each activity they perform on pasture before, during, and after the rainfall. By applying various network indices, we have shown that water …
Noninvasive Pregnancy Detection In Wild Felids Using Enzyme Immunoassay Of Fecal 13, 14–Dihydro–15–Keto–Pgf2Α Metabolite (Pgfm), Nikitha Prakash, Suchitra Bhadravathi Raju, Sahadev Annayappa, Leena Gowda, Veena Malavalli Prabhushankar
Noninvasive Pregnancy Detection In Wild Felids Using Enzyme Immunoassay Of Fecal 13, 14–Dihydro–15–Keto–Pgf2Α Metabolite (Pgfm), Nikitha Prakash, Suchitra Bhadravathi Raju, Sahadev Annayappa, Leena Gowda, Veena Malavalli Prabhushankar
Turkish Journal of Veterinary & Animal Sciences
The study was carried out on Panthera species (4 lions and 5 tigers) housed in Bannerghatta Biological Park, Bengaluru, and Sri Chamarajendra Zoological Gardens, Mysuru. Estrus behavior such as rolling, licking, nudging, chuffing, frequent urination, whitish discharge, vocalisation, lordosis and copulatory behavior such as vocalisation, allowed to be mounted, aggression towards male, mounting, and biting of the nape of female were exhibited both in lions and tigers which helped to identify the time of fecal sample collection. The study’s main aim was to carry out noninvasive and noncontact pregnancy detection in these wild felids. Feces samples collected from the female …