Life Sciences Commons^™

Site-Dependent Differences In Artificial Reef Function: Implications For Coral Reef Restoration, Robin L. Sherman, David S. Gilliam, Richard E. Spieler

Marine & Environmental Sciences Faculty Articles

There is an increasing use of artificial structure in coral reef restoration (for references, see Spieler et al., this volume). Often artificial reef structures are chosen for a restoration project simply because they were used elsewhere. However, it is questionable whether the results obtained at one restoration site can be extrapolated to another. In recent years, several studies have examined the effect of artificial reef site selection on formation of associated fish, algae, and/or invertebrate assemblages (Alevizon et al., 1985; Blinova et al., 1994; Bombace et al., 1994; Caley and St. John, 1996; Chang, 1985; Haughton and Aiken, 1989; Hixon …

Artificial Substrate And Coral Reef Restoration: What Do We Need To Know To Know What We Need, Richard E. Spieler, David S. Gilliam, Robin L. Sherman

Marine & Environmental Sciences Faculty Articles

To use artificial substrate effectively in coral reef restoration certain basic knowledge is required: (1) what is the artificial substrate expected to accomplish relative to the goals of the restoration effort and (2) what are the expected interactions of the selected substrate’s composition, texture, orientation, and design with the damaged environment and the biota of interest. Whereas the first point is usually clear, at least in general terms, the second is not. In this review, we examine: the functions of artificial substrate in restoration and some of the physical (i.e., composition; surface texture; color and chemistry; and design in terms …

Mapping And Monitoring Of Coral Communities And Their Spatial Patterns Using A Surface-Based Video Method From A Vessel, Bernhard Riegl, Jan L. Korrubel, Charles Martin

Marine & Environmental Sciences Faculty Articles

No Abstract Provided.

Degradation Of Reef Structure, Coral And Fish Communities In The Red Sea By Ship Groundings And Dynamite Fisheries, Bernhard Riegl

Marine & Environmental Sciences Faculty Articles

Reef degradation was investigated on 66 Egyptian Red Sea reefs—60 reefs for dynamite damage (using line transects) and six ship grounding sites (using 1 m sample squares). Ship groundings and dynamite fishing caused similar damage, reduction of the reef to rubble (65% of reefs were dynamited, mostly leeward, 58%). Changes in coral (line transect study) and fish communities (point count study) in impacted sites were documented. On impacted reefs, coral cover decreased, bare substratum and rubble increased, and fish dominance shifted away from Pomacentridae. Oceanographic conditions result in a stable pattern of coral communities (windward Acropora, leeward Porites). …

Biological Survey Report For The Calypso Natural Gas Pipeline: Shore Approach Route North Of Port Everglades Entrance Channel With Landing South Of Port Everglades Entrance Channel, Richard E. Dodge, Susan L. Thornton, David S. Gilliam, Richard Shaul

Marine & Environmental Sciences Faculty Reports

The Calypso Natural Gas Pipeline Project (project) will include a 24-inch pipeline which will extend from the Exclusive Economic Zone (EEZ) off the southeast Florida coastline to a shore approach at Port Everglades in Fort Lauderdale, Florida.

This report, which was commissioned in May 2001 and completed in July, 2001, documents the results of a detailed biological survey of underwater marine habitats from 5 to 200 feet water depth for the pipeline route. The route, which was established based on the subsea survey that was completed in May 2001 by Williamson & Associates, Inc., includes a shore approach from the …

Genetic Evidence For Two Species Of Elephant In Africa, Alfred L. Roca, Nicholas Georgiadis, Jill Pecon-Slattery, Stephen J. O'Brien

Biology Faculty Articles

Elephants from the tropical forests of Africa are morphologically distinct from savannah or bush elephants. Dart-biopsy samples from 195 free-ranging African elephants in 21 populations were examined for DNA sequence variation in four nuclear genes (1732 base pairs). Phylogenetic distinctions between African forest elephant and savannah elephant populations corresponded to 58% of the difference in the same genes between elephant genera Loxodonta (African) and Elephas (Asian). Large genetic distance, multiple genetically fixed nucleotide site differences, morphological and habitat distinctions, and extremely limited hybridization of gene flow between forest and savannah elephants support the recognition and conservation management of two African …

Responses Of Three Coral Communities To The 1997–98 El Niño–Southern Oscillation: Galápagos Islands, Ecuador, Joshua S. Feingold

Marine & Environmental Sciences Faculty Articles

One deep (13–15 m depth) and two shallow water (1.5 and 7 m) coral communities in the Galápagos Islands, Ecuador were monitored for tissue response (bleaching, paling, morbidity) and secondary responses during and after elevated temperature stress associated with the 1997–98 El Niño–Southern Oscillation (ENSO) event. Between March and May 1998, the fungiid coral Diaseris distorta paled and bleached (up to 88.0% of all individuals bleached) at 13–15 m depth. The small branching colonial coral, Psammocora stellata, paled (79.2% of all colonies) with very little bleaching (11.1%), also at 13–15 m depth. However, by May 1998 colonies of this …

Effect Of A Single Amino Acid Change In Mhc Class I Molecules On The Rate Of Progression To Aids, Xiaojiang Gao, George W. Nelson, Peter Karacki, Maureen P. Martin, John Phair, Richard A. Kaslow, James J. Goedert, Susan Buchbinder, Keith Hoots, David Vlahov, Stephen J. O'Brien, Mary Carrington

Biology Faculty Articles

Background From studies of genetic polymorphisms and the rate of progression from human immunodeficiency virus type 1 (HIV-1) infection to the acquired immunodeficiency syndrome (AIDS), it appears that the strongest susceptibility is conferred by the major-histocompatibility-complex (MHC) class I type HLA-B*35,Cw*04 allele. However, cytotoxic T-lymphocyte responses have been observed against HIV-1 epitopes presented by HLA-B*3501, the most common HLA-B*35 subtype. We examined subtypes of HLA-B*35 in five cohorts and analyzed the relation of structural differences between HLA-B*35 subtypes to the risk of progression to AIDS. Methods Genotyping of HLA class I loci was performed for 850 patients who seroconverted and …

Trophic Dynamics Of Pinniped Populations In Alaska Using Stable Carbon And Nitrogen Isotope Ratios, Amy Hirons

Oceanography Faculty Theses and Dissertations

Trophic changes in populations of Stellar sea lions (Eumetorias jubatus), northern fur seals (Callorhinus ursinus) and harbor seals (Phoca vitulina) in the eastern Bering Sea and Gulf of Alaska were studied using stable isotope analysis. Declining populations of all three species of pinnipeds prompted this study to determine if changes in diet, likely resulting from food limitation, contributed to the declines. Stable carbon and nitrogen isotope ratios were analyzed in the vibrissae (whiskers) and body tissues of pinnipeds from 1993-1998 and compared with muscle tissue from prey species during the same time period to determine pinniped trophic dynamics. Vibrissae growth …

Spring/Summer 2001, Nsu Oceanographic Center

Currents

No abstract provided.

Marine Biological Monitoring In Broward County, Florida: Year 1 Annual Report, David S. Gilliam, Richard E. Dodge, Richard E. Spieler, Susan L. Thornton, Lance K. B. Jordan

Marine & Environmental Sciences Faculty Reports

No abstract provided.

Canine And Feline Parvoviruses Can Use Human Or Feline Transferrin Receptors To Bind, Enter, And Infect Cells, John S. L. Parker, William J. Murphy, Dai Wang, Stephen J. O'Brien, Colin R. Parrish

Biology Faculty Articles

Canine parvovirus (CPV) enters and infects cells by a dynamin-dependent, clathrin-mediated endocytic pathway, and viral capsids colocalize with transferrin in perinuclear vesicles of cells shortly after entry (J. S. L. Parker and C. R. Parrish, J. Virol. 74:1919–1930, 2000). Here we report that CPV and feline panleukopenia virus (FPV), a closely related parvovirus, bind to the human and feline transferrin receptors (TfRs) and use these receptors to enter and infect cells. Capsids did not detectably bind or enter quail QT35 cells or a Chinese hamster ovary (CHO) cell-derived cell line that lacks any TfR (TRVb cells). However, capsids bound and …

An Approach To Parameterization Of The Oceanic Turbulent Boundary Layer In The Western Pacific Warm Pool, Alexander Soloviev, Roger Lukas, Peter Hacker

Marine & Environmental Sciences Faculty Articles

Vertical profiles of zonal velocity and the dissipation rate ε of the turbulent kinetic energy obtained during the Tropical Ocean-Global Atmosphere Coupled Ocean-Atmosphere Response Experiment (COARE) are analyzed in the context of planetary boundary layer relationships previously derived from atmospheric measurements. The presence of a barrier layer and the striking effect of increased dimensionless shear and ε at the bottom of the surface mixed layer of the ocean, features often observed in the western Pacific warm pool area, are consistent with the boundary layer laws. The gradient Richardson number Ri is found to be a convenient parameter for scaling the …

Review Of The Marine Mammals Of The Gulf Of Mexico, Edward O. Keith

Marine & Environmental Sciences Faculty Articles

No abstract provided.

Biological Assessment Of Artificial Reef Materials: Concrete Aggregates And Quarry Stone, Richard E. Spieler

Marine & Environmental Sciences Faculty Reports

No abstract provided.

Gross Brain Morphology In The Yellow Stingray, Urobatis Jamaicensis, Brian K. Walker, Robin L. Sherman

Marine & Environmental Sciences Faculty Articles

The yellow stingray, Urobatis jamaicensis (family Urolophidae), a short-lived, relatively small elasmobranch species (35--40 cm total length), is a common inhabitant of hard bottom and coral reef communities in southeastern Florida and many parts of the Caribbean. A paucity of published studies deal with the yellow stingray, none however on the gross morphology of its nervous system. The gross brain structure of the yellow stingray is compared with previously published studies on other batoid elasmobranchs. The external brain structure of Urobatis jamaicensis was similar to that reported for other Dasyatids, including presence of an asymmetric cerebellum. The bilaterally symmetric brain …

Sea Turtle Conservation Program, Broward County, Fl 2001 Report, Curtis M. Burney, Stefanie Ouellette

Marine & Environmental Sciences Faculty Reports

No abstract provided.

Biological Assessment Of Artificial Reef Materials: Concrete Aggregates And Quarry Stone, Richard E. Spieler

Marine & Environmental Sciences Faculty Reports

No abstract provided.

Memphis Project Annual Report July 2000 - July 2001, Richard E. Spieler, T. Patrick Quinn

Marine & Environmental Sciences Faculty Reports

No abstract provided.

Fish Census Of Selected Artificial Reefs In Broward County, Richard E. Spieler

Marine & Environmental Sciences Faculty Reports

No abstract provided.

Abundance And Distribution Of Commensal Amphipods From Common Marine Sponges Of Southeast Florida, Stacie E. Crowe

HCNSO Student Theses and Dissertations

Marine sponges were examined from shallow waters of southeast Florida and the Florida Keys to determine species composition and distribution of commensal amphipod crustaceans from shallow reef, mangrove, and seagrass habitats. Twenty sponge species were investigated during this study, sixteen of which housed amphipods in the families Colomastigidae and/or Leucothoidae. Six species of commensal amphipods were identified. Leucothoe spinicarpa (Abildgaard) species "complex" was the most dominant amphipod commensal, representing 63% of the total amphipods collected. The L. spinicarpa "complex" contains four local morphotypes, which are diagnosed and briefly described. Common sponge hosts included Callyspongia vaginalis, Mycale sp., and Myriastra kallitetilla.

Environmental Analysis Of Cores From The Helike Delta, Gulf Of Corinth, Greece, S. Soter, Patricia Blackwelder, C. Tziavos, D. Katsonopoulou, Terri Hood, Carlos A. Alvarez Zarikian

Marine & Environmental Sciences Faculty Articles

The fan delta southeast of Aigion on the southwest shore of the Gulf of Corinth was the site of ancient Helike, a city destroyed and submerged by an earthquake and seismic sea wave in 373 BC. Bore holes drilled on the Helike Delta yielded numerous ceramic fragments in the upper 12 meters, and a record of changing local environments on the delta during the Holocene period. At about 8 m below present sea level the core profiles show a general upward transition from marine to lacustrine/lagoonalc onditions.T he transition dates from about 8 kyr BP and is probably due to …

Multiple Spatial Scale Assessment Of Coral Reef And Hard-Bottom Community Structure In The Florida Keys National Marine Sanctuary, Steven Miller, Dione W. Swanson, Mark Chiappone

Marine & Environmental Sciences Faculty Proceedings, Presentations, Speeches, Lectures

The zoning plan for the Florida Keys National Marine Sanctuary (FKNMS) established 23 relatively small no-fishing zones distributed mostly along the offshore reef tract in 1997. In 1999, a two-stage, stratified random sampling design based on the proportion of coral reef and hard-bottom types within the FKNMS was conducted. Our study focused on differences in coverage, density, and condition of benthic organisms with respect to habitat type, regional variations, and differences between no-fishing zones and reference sites at 80 locations spanning 200 km. Most variables exhibited significant spatial differences by habitat type or between individual no-fishing zones and reference sites …

Fall 2000, Nsu Oceanographic Center

Currents

No abstract provided.

A Taxonomic Evaluation Of The Comatulid Genus Stephanometra (Echinodermata:Crinoidea), Dana Lin Rankin

HCNSO Student Theses and Dissertations

Several genera in the comatulid family Mariametridae are currently ambiguously distinguished on the basis of variations in length and robustness of oral pinnules. Previous descriptions have suggested that at least the genera Stephanometra and Lamprometra are imperfectly distinguishable. A detailed re-examination of morphology coupled with principal component analyses of morphometric data and cladistic analyses provide support for a monophyletic Stephanometra distinct from Lamprometra. A preliminary morphological analysis suggests that Dichrometra and Liparometra should be synonymized with Lamprometra. The six currently recognized species of Stephanometra uniquely share at least one pair of oral pinnules characterized by enlarged size, reduced ambulacral groove …

Unusual Polymorphisms In Human Immunodeficiency Virus Type 1 Associated With Nonprogressive Infection, Louis Alexander, Emma Weiskopf, Thomas C. Greenough, Nathan C. Gaddis, Marcy C. Auerbach, Michael H. Malim, Stephen J. O'Brien, Bruce D. Walker, John L. Sullivan, Ronald C. Desrosiers

Biology Faculty Articles

Factors accounting for long-term nonprogression may include infection with an attenuated strain of human immunodeficiency virus type 1 (HIV-1), genetic polymorphisms in the host, and virus-specific immune responses. In this study, we examined eight individuals with nonprogressing or slowly progressing HIV-1 infection, none of whom were homozygous for host-specific polymorphisms (CCR5-Δ32, CCR2-64I, and SDF-1-3^'A) which have been associated with slower disease progression. HIV-1 was recovered from seven of the eight, and recovered virus was used for sequencing the full-length HIV-1 genome; full-length HIV-1 genome sequences from the eighth were determined following amplification of viral …

A Radiation Hybrid Map Of The Cat Genome: Implications For Comparative Mapping, William J. Murphy, Shan Sun, Zhang-Qun Chen, Naoya Yuhki, Deborah Hirschmann, Marilyn Menotti-Raymond, Stephen J. O'Brien

Biology Faculty Articles

Ordered gene maps of mammalian species are becoming increasingly valued in assigning gene variants to function in human and animal models, as well as recapitulating the natural history of genome organization. To extend this power to the domestic cat, a radiation hybrid (RH) map of the cat was constructed integrating 424 Type I-coding genes with 176 microsatellite markers, providing coverage over all 20 feline chromosomes. Alignment of parallel RH maps of human and cat reveal 100 conserved segments ordered (CSOs) between the species, nearly three times the number observed with reciprocal chromosome painting analyses. The observed number is equivalent to …

Spring 2000, Nsu Oceanographic Center

Currents

No abstract provided.

Horizontal Structure Of The Upper Ocean Velocity And Density Fields In The Western Equatorial Pacific Warm Pool: Depth Range From 20 To 250 M, Alexander Soloviev, Roger Lukas, Peter Hacker

Marine & Environmental Sciences Faculty Articles

Wavenumber spectra of velocity and density fields in the western equatorial Pacific warm pool on scales 6–120 km are estimated using the shipboard survey data collected during the TOGA Coupled Ocean–Atmosphere Response Experiment (COARE). The spectra are averaged over three depth intervals: 20–60, 60–110, and 110–250 m (corresponding to the Yoshida jet, the South Equatorial Current, and the southern edge of Equatorial Undercurrent). The velocity spectra are corrected for the mean flow shear advection, which is important under conditions of low gradient Richardson number (Ri). After that, both velocity and density spectra are consistent with an internal wave spectral model …

Sea Turtle Conservation Program, Broward County, Fl 2000 Report, Curtis M. Burney, William E. Margolis

Marine & Environmental Sciences Faculty Reports

No abstract provided.